Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:13:37 (969356): wrapper (7.7.26015): starting
03:13:37 (969356): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 03:13:37] Arguments: --nthreads 3
[2026-02-02 03:13:37] Threads: 3
[2026-02-02 03:13:37] Checking for CVMFS
[2026-02-02 03:13:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 03:13:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 03:13:38] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 03:13:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 03:13:38] 2.9.2.0 4027610 6595 87436 155769 1 50 25158033 36864000 0 130560 0 2962146 99.987 205650 13471 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 03:13:38] CVMFS is ok
[2026-02-02 03:13:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 03:13:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 03:13:38] Further information can be found at the LHC@home message board.
[2026-02-02 03:13:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 03:13:38] Checking for apptainer binary...
[2026-02-02 03:13:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 03:13:38] Running /usr/bin/apptainer --version
[2026-02-02 03:13:38] apptainer version 1.4.1-1.1
[2026-02-02 03:13:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 03:13:38] magicA246a
[2026-02-02 03:13:38] apptainer works
[2026-02-02 03:13:38] Set ATHENA_PROC_NUMBER=3
[2026-02-02 03:13:38] Set ATHENA_CORE_NUMBER=3
[2026-02-02 03:13:38] Starting ATLAS job with PandaID=6995619633
[2026-02-02 03:13:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 04:36:13]  *** The last 200 lines of the pilot log: ***
[2026-02-02 04:36:13] 2026-02-02 03:35:42,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-02 04:36:13] 2026-02-02 03:35:42,194 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-02 04:36:13] 2026-02-02 03:35:42,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-02 04:36:13] 2026-02-02 03:35:42,194 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-02 04:36:13] 2026-02-02 03:35:42,194 | INFO     | job 6995619633 has completed (purged errors)
[2026-02-02 04:36:13] 2026-02-02 03:35:42,194 | INFO     | overall cleanup function is called
[2026-02-02 04:36:13] 2026-02-02 03:35:43,196 | INFO     | --- collectZombieJob: --- 10, [977811]
[2026-02-02 04:36:13] 2026-02-02 03:35:43,196 | INFO     | zombie collector waiting for pid 977811
[2026-02-02 04:36:13] 2026-02-02 03:35:43,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 04:36:13] 2026-02-02 03:35:43,196 | INFO     | collected zombie processes
[2026-02-02 04:36:13] 2026-02-02 03:35:43,196 | INFO     | will attempt to kill all subprocesses of pid=977811
[2026-02-02 04:36:13] 2026-02-02 03:35:43,253 | INFO     | process IDs to be killed: [977811] (in reverse order)
[2026-02-02 04:36:13] 2026-02-02 03:35:43,282 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 04:36:13] 2026-02-02 03:35:43,282 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 04:36:13] 2026-02-02 03:35:43,284 | INFO     | did not find any defunct processes belonging to 977811
[2026-02-02 04:36:13] 2026-02-02 03:35:43,285 | INFO     | did not find any defunct processes belonging to 977811
[2026-02-02 04:36:13] 2026-02-02 03:35:43,286 | INFO     | ready for new job
[2026-02-02 04:36:13] 2026-02-02 03:35:43,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 04:36:13] 2026-02-02 03:35:43,286 | INFO     | **************************************
[2026-02-02 04:36:13] 2026-02-02 03:35:43,286 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 04:36:13] 2026-02-02 03:35:43,286 | INFO     | **************************************
[2026-02-02 04:36:13] 2026-02-02 03:35:43,286 | INFO     | 
[2026-02-02 04:36:13] 2026-02-02 03:35:43,287 | INFO     | architecture information:
[2026-02-02 04:36:13] 2026-02-02 03:35:43,287 | INFO     | executing command: cat /etc/os-release
[2026-02-02 04:36:13] 2026-02-02 03:35:43,295 | INFO     | cat /etc/os-release:
[2026-02-02 04:36:13] NAME="CentOS Linux"
[2026-02-02 04:36:13] VERSION="7 (Core)"
[2026-02-02 04:36:13] ID="centos"
[2026-02-02 04:36:13] ID_LIKE="rhel fedora"
[2026-02-02 04:36:13] VERSION_ID="7"
[2026-02-02 04:36:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 04:36:13] ANSI_COLOR="0;31"
[2026-02-02 04:36:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 04:36:13] HOME_URL="https://www.centos.org/"
[2026-02-02 04:36:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 04:36:13] 
[2026-02-02 04:36:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 04:36:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 04:36:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 04:36:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 04:36:13] 
[2026-02-02 04:36:13] 2026-02-02 03:35:43,296 | INFO     | **************************************
[2026-02-02 04:36:13] 2026-02-02 03:35:43,799 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 04:36:13] 2026-02-02 03:35:43,811 | INFO     | sufficient remaining disk space (275990446080 B)
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | INFO     | update_server=False
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 04:36:13] 2026-02-02 03:35:43,812 | INFO     | aborting loop
[2026-02-02 04:36:13] 2026-02-02 03:35:43,838 | INFO     | all job control threads have been joined
[2026-02-02 04:36:13] 2026-02-02 03:35:43,930 | INFO     | all data control threads have been joined
[2026-02-02 04:36:13] 2026-02-02 03:35:44,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 04:36:13] 2026-02-02 03:35:44,452 | INFO     | all payload control threads have been joined
[2026-02-02 04:36:13] 2026-02-02 03:35:44,817 | INFO     | [job] retrieve thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:44,818 | INFO     | [job] queue monitor thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:44,818 | INFO     | [job] job monitor thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:44,843 | INFO     | [job] control thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:44,935 | INFO     | [data] control thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,007 | INFO     | [payload] failed_post thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,148 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,373 | INFO     | [job] validate thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,414 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,458 | INFO     | [payload] control thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,539 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,576 | INFO     | [payload] validate_post thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,640 | INFO     | [data] copytool_in thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:45,829 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 04:36:13] 2026-02-02 03:35:46,111 | INFO     | [data] copytool_out thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:49,834 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:54,693 | INFO     | job.realtimelogging is not enabled
[2026-02-02 04:36:13] 2026-02-02 03:35:55,695 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 04:36:13] 2026-02-02 03:35:55,696 | INFO     | [monitor] cgroup control has ended
[2026-02-02 04:36:13] 2026-02-02 03:35:56,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139859602589504)>', '<ExcThread(monitor, started 139859319863040)>']
[2026-02-02 04:36:13] 2026-02-02 03:36:01,346 | INFO     | all workflow threads have been joined
[2026-02-02 04:36:13] 2026-02-02 03:36:01,346 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 04:36:13] 2026-02-02 03:36:01,346 | INFO     | traces error code: 0
[2026-02-02 04:36:13] 2026-02-02 03:36:01,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 04:36:13] 2026-02-02 03:36:13,734 | INFO     | PID=973390 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-02 04:36:13] 2026-02-02 03:36:13,734 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 04:36:13] 2026-02-02 03:36:13,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 04:36:13] 2026-02-02 03:36:13,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 04:36:13] 2026-02-02 03:36:13,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 04:36:13] 2026-02-02 03:36:13,734 | INFO     | [monitor] control thread has ended
[2026-02-02 04:36:13] 2026-02-02 03:36:13,784 [wrapper] ==== pilot stdout END ====
[2026-02-02 04:36:13] 2026-02-02 03:36:13,787 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 04:36:13] 2026-02-02 03:36:13,789 [wrapper] pilotpid: 973390
[2026-02-02 04:36:13] 2026-02-02 03:36:13,791 [wrapper] Pilot exit status: 0
[2026-02-02 04:36:13] 2026-02-02 03:36:13,799 [wrapper] pandaids: 6995619633
[2026-02-02 04:36:13] 2026-02-02 03:36:13,817 [wrapper] cleanup supervisor_pilot  984078 973391
[2026-02-02 04:36:13] 2026-02-02 03:36:13,820 [wrapper] Test setup, not cleaning
[2026-02-02 04:36:13] 2026-02-02 03:36:13,822 [wrapper] apfmon messages muted
[2026-02-02 04:36:13] 2026-02-02 03:36:13,824 [wrapper] ==== wrapper stdout END ====
[2026-02-02 04:36:13] 2026-02-02 03:36:13,827 [wrapper] ==== wrapper stderr END ====
[2026-02-02 04:36:13]  *** Error codes and diagnostics ***
[2026-02-02 04:36:13]     "exeErrorCode": 0,
[2026-02-02 04:36:13]     "exeErrorDiag": "",
[2026-02-02 04:36:13]     "pilotErrorCode": 0,
[2026-02-02 04:36:13]     "pilotErrorDiag": "",
[2026-02-02 04:36:13]  *** Listing of results directory ***
[2026-02-02 04:36:13] total 669240
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc    584422 Feb  1 09:53 pilot3.tar.gz
[2026-02-02 04:36:13] -rwx------ 1 boinc boinc     36322 Feb  1 09:54 runpilot2-wrapper.sh
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc      5111 Feb  1 09:55 queuedata.json
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc       100 Feb  2 03:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 04:36:13] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 03:13 run_atlas
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc       105 Feb  2 03:13 job.xml
[2026-02-02 04:36:13] -rw-r--r-- 2 boinc boinc 497645029 Feb  2 03:13 EVNT.48317869._000303.pool.root.1
[2026-02-02 04:36:13] -rw-r--r-- 2 boinc boinc    597756 Feb  2 03:13 input.tar.gz
[2026-02-02 04:36:13] -rw-r--r-- 2 boinc boinc     15845 Feb  2 03:13 start_atlas.sh
[2026-02-02 04:36:13] drwxrwx--x 2 boinc boinc      4096 Feb  2 03:13 shared
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc         0 Feb  2 03:13 boinc_setup_complete
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc      6447 Feb  2 03:13 init_data.xml
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc         0 Feb  2 03:13 boinc_lockfile
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc      2519 Feb  2 03:13 pandaJob.out
[2026-02-02 04:36:13] -rw------- 1 boinc boinc   1009765 Feb  2 03:13 agis_schedconf.cvmfs.json
[2026-02-02 04:36:13] -rw------- 1 boinc boinc   1511668 Feb  2 03:13 agis_ddmendpoints.agis.ALL.json
[2026-02-02 04:36:13] -rw------- 1 boinc boinc       427 Feb  2 03:13 workernode_map.json
[2026-02-02 04:36:13] drwx------ 5 boinc boinc      4096 Feb  2 03:13 pilot3
[2026-02-02 04:36:13] -rw------- 1 boinc boinc        95 Feb  2 04:35 pilot_heartbeat.json
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc       530 Feb  2 04:35 boinc_task_state.xml
[2026-02-02 04:36:13] -rw------- 1 boinc boinc 181721477 Feb  2 04:35 HITS.48317872._016612.pool.root.1
[2026-02-02 04:36:13] -rw------- 1 boinc boinc      1023 Feb  2 04:35 memory_monitor_summary.json
[2026-02-02 04:36:13] -rw------- 1 boinc boinc    286622 Feb  2 04:35 log.48317872._016612.job.log.tgz.1
[2026-02-02 04:36:13] -rw------- 1 boinc boinc      6318 Feb  2 04:35 heartbeat.json
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc      8192 Feb  2 04:35 boinc_mmap_file
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc        27 Feb  2 04:35 wrapper_checkpoint.txt
[2026-02-02 04:36:13] -rw------- 1 boinc boinc       746 Feb  2 04:36 pilotlog.txt
[2026-02-02 04:36:13] -rw------- 1 boinc boinc    720417 Feb  2 04:36 log.48317872._016612.job.log.1
[2026-02-02 04:36:13] -rw------- 1 boinc boinc       357 Feb  2 04:36 output.list
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc       620 Feb  2 04:36 runtime_log
[2026-02-02 04:36:13] -rw------- 1 boinc boinc   1024000 Feb  2 04:36 result.tar.gz
[2026-02-02 04:36:13] -rw------- 1 boinc boinc       661 Feb  2 04:36 xh5LDmzOi68n9Rq4apOajLDm4fhM0noT9bVooX4SDmMXPKDmptQFjn.diag
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc      8916 Feb  2 04:36 runtime_log.err
[2026-02-02 04:36:13] -rw-r--r-- 1 boinc boinc     11298 Feb  2 04:36 stderr.txt
[2026-02-02 04:36:13] HITS file was successfully produced:
[2026-02-02 04:36:13] -rw------- 1 boinc boinc 181721477 Feb  2 04:35 shared/HITS.pool.root.1
[2026-02-02 04:36:13]  *** Contents of shared directory: ***
[2026-02-02 04:36:13] total 665056
[2026-02-02 04:36:13] -rw-r--r-- 2 boinc boinc 497645029 Feb  2 03:13 ATLAS.root_0
[2026-02-02 04:36:13] -rw-r--r-- 2 boinc boinc    597756 Feb  2 03:13 input.tar.gz
[2026-02-02 04:36:13] -rw-r--r-- 2 boinc boinc     15845 Feb  2 03:13 start_atlas.sh
[2026-02-02 04:36:13] -rw------- 1 boinc boinc 181721477 Feb  2 04:35 HITS.pool.root.1
[2026-02-02 04:36:13] -rw------- 1 boinc boinc   1024000 Feb  2 04:36 result.tar.gz
04:36:15 (969356): run_atlas exited; CPU time 14135.914978
04:36:15 (969356): called boinc_finish(0)

</stderr_txt>
]]>

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