Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:08:16 (2397500): wrapper (7.7.26015): starting
03:08:16 (2397500): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 03:08:16] Arguments: --nthreads 3
[2026-02-02 03:08:16] Threads: 3
[2026-02-02 03:08:16] Checking for CVMFS
[2026-02-02 03:08:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 03:08:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 03:08:17] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 03:08:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 03:08:17] 2.9.2.0 1381994 6386 84708 155769 2 50 26034006 36864001 0 130560 0 2920420 99.986 206931 17483 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 03:08:17] CVMFS is ok
[2026-02-02 03:08:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 03:08:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 03:08:17] Further information can be found at the LHC@home message board.
[2026-02-02 03:08:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 03:08:17] Checking for apptainer binary...
[2026-02-02 03:08:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 03:08:17] Running /usr/bin/apptainer --version
[2026-02-02 03:08:17] apptainer version 1.4.1-1.1
[2026-02-02 03:08:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 03:08:17] magicA161a
[2026-02-02 03:08:17] apptainer works
[2026-02-02 03:08:17] Set ATHENA_PROC_NUMBER=3
[2026-02-02 03:08:17] Set ATHENA_CORE_NUMBER=3
[2026-02-02 03:08:17] Starting ATLAS job with PandaID=6991384283
[2026-02-02 03:08:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 04:20:52]  *** The last 200 lines of the pilot log: ***
[2026-02-02 04:20:52] 2026-02-02 03:20:20,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-02 04:20:52] 2026-02-02 03:20:20,535 | INFO     | collected zombie processes
[2026-02-02 04:20:52] 2026-02-02 03:20:20,535 | INFO     | will attempt to kill all subprocesses of pid=2405963
[2026-02-02 04:20:52] 2026-02-02 03:20:20,577 | INFO     | process IDs to be killed: [2405963] (in reverse order)
[2026-02-02 04:20:52] 2026-02-02 03:20:20,600 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 04:20:52] 2026-02-02 03:20:20,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 04:20:52] 2026-02-02 03:20:20,601 | INFO     | did not find any defunct processes belonging to 2405963
[2026-02-02 04:20:52] 2026-02-02 03:20:20,602 | INFO     | did not find any defunct processes belonging to 2405963
[2026-02-02 04:20:52] 2026-02-02 03:20:20,602 | INFO     | ready for new job
[2026-02-02 04:20:52] 2026-02-02 03:20:20,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 04:20:52] 2026-02-02 03:20:20,603 | INFO     | **************************************
[2026-02-02 04:20:52] 2026-02-02 03:20:20,603 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 04:20:52] 2026-02-02 03:20:20,603 | INFO     | **************************************
[2026-02-02 04:20:52] 2026-02-02 03:20:20,603 | INFO     | 
[2026-02-02 04:20:52] 2026-02-02 03:20:20,604 | INFO     | architecture information:
[2026-02-02 04:20:52] 2026-02-02 03:20:20,604 | INFO     | executing command: cat /etc/os-release
[2026-02-02 04:20:52] 2026-02-02 03:20:20,612 | INFO     | cat /etc/os-release:
[2026-02-02 04:20:52] NAME="CentOS Linux"
[2026-02-02 04:20:52] VERSION="7 (Core)"
[2026-02-02 04:20:52] ID="centos"
[2026-02-02 04:20:52] ID_LIKE="rhel fedora"
[2026-02-02 04:20:52] VERSION_ID="7"
[2026-02-02 04:20:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 04:20:52] ANSI_COLOR="0;31"
[2026-02-02 04:20:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 04:20:52] HOME_URL="https://www.centos.org/"
[2026-02-02 04:20:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 04:20:52] 
[2026-02-02 04:20:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 04:20:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 04:20:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 04:20:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 04:20:52] 
[2026-02-02 04:20:52] 2026-02-02 03:20:20,612 | INFO     | **************************************
[2026-02-02 04:20:52] 2026-02-02 03:20:21,115 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 04:20:52] 2026-02-02 03:20:21,127 | INFO     | sufficient remaining disk space (375963779072 B)
[2026-02-02 04:20:52] 2026-02-02 03:20:21,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 04:20:52] 2026-02-02 03:20:21,128 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 04:20:52] 2026-02-02 03:20:21,128 | INFO     | update_server=False
[2026-02-02 04:20:52] 2026-02-02 03:20:21,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 04:20:52] 2026-02-02 03:20:21,128 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 04:20:52] 2026-02-02 03:20:21,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 04:20:52] 2026-02-02 03:20:21,686 | INFO     | all job control threads have been joined
[2026-02-02 04:20:52] 2026-02-02 03:20:21,775 | INFO     | all data control threads have been joined
[2026-02-02 04:20:52] 2026-02-02 03:20:22,065 | WARNING  | process 2405963 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 04:20:52] 2026-02-02 03:20:22,093 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 04:20:52] 2026-02-02 03:20:22,129 | INFO     | number of running child processes to parent process 2405963: 1
[2026-02-02 04:20:52] 2026-02-02 03:20:22,129 | INFO     | maximum number of monitored processes: 6
[2026-02-02 04:20:52] 2026-02-02 03:20:22,129 | INFO     | aborting job monitoring since job object (job id=6991384283) has expired
[2026-02-02 04:20:52] 2026-02-02 03:20:22,129 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 04:20:52] 2026-02-02 03:20:22,129 | INFO     | will abort loop
[2026-02-02 04:20:52] 2026-02-02 03:20:22,133 | INFO     | [job] retrieve thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,133 | INFO     | [job] queue monitor thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,261 | INFO     | all payload control threads have been joined
[2026-02-02 04:20:52] 2026-02-02 03:20:22,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 04:20:52] 2026-02-02 03:20:22,597 | INFO     | [payload] validate_post thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,692 | INFO     | [job] control thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,713 | INFO     | [job] validate thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,781 | INFO     | [data] control thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,795 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,811 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:22,935 | INFO     | [data] copytool_in thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:23,134 | INFO     | [job] job monitor thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:23,267 | INFO     | [payload] control thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:23,438 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:23,698 | INFO     | [payload] failed_post thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:24,603 | INFO     | [data] copytool_out thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:25,132 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:31,487 | INFO     | job.realtimelogging is not enabled
[2026-02-02 04:20:52] 2026-02-02 03:20:32,209 | INFO     | [monitor] cgroup control has ended
[2026-02-02 04:20:52] 2026-02-02 03:20:32,493 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 04:20:52] 2026-02-02 03:20:32,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140577553839936)>', '<ExcThread(monitor, started 140577198814976)>']
[2026-02-02 04:20:52] 2026-02-02 03:20:37,544 | INFO     | all workflow threads have been joined
[2026-02-02 04:20:52] 2026-02-02 03:20:37,544 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 04:20:52] 2026-02-02 03:20:37,545 | INFO     | traces error code: 0
[2026-02-02 04:20:52] 2026-02-02 03:20:37,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 04:20:52] 2026-02-02 03:20:51,974 | INFO     | PID=2401539 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 04:20:52] 2026-02-02 03:20:51,975 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 04:20:52] 2026-02-02 03:20:51,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 04:20:52] 2026-02-02 03:20:51,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 04:20:52] 2026-02-02 03:20:51,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 04:20:52] 2026-02-02 03:20:51,975 | INFO     | [monitor] control thread has ended
[2026-02-02 04:20:52] 2026-02-02 03:20:52,020 [wrapper] ==== pilot stdout END ====
[2026-02-02 04:20:52] 2026-02-02 03:20:52,023 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 04:20:52] 2026-02-02 03:20:52,025 [wrapper] pilotpid: 2401539
[2026-02-02 04:20:52] 2026-02-02 03:20:52,027 [wrapper] Pilot exit status: 0
[2026-02-02 04:20:52] 2026-02-02 03:20:52,034 [wrapper] pandaids: 6991384283
[2026-02-02 04:20:52] 2026-02-02 03:20:52,049 [wrapper] cleanup supervisor_pilot 2411106 2401540
[2026-02-02 04:20:52] 2026-02-02 03:20:52,051 [wrapper] Test setup, not cleaning
[2026-02-02 04:20:52] 2026-02-02 03:20:52,054 [wrapper] apfmon messages muted
[2026-02-02 04:20:52] 2026-02-02 03:20:52,056 [wrapper] ==== wrapper stdout END ====
[2026-02-02 04:20:52] 2026-02-02 03:20:52,059 [wrapper] ==== wrapper stderr END ====
[2026-02-02 04:20:52]  *** Error codes and diagnostics ***
[2026-02-02 04:20:52]     "exeErrorCode": 0,
[2026-02-02 04:20:52]     "exeErrorDiag": "",
[2026-02-02 04:20:52]     "pilotErrorCode": 0,
[2026-02-02 04:20:52]     "pilotErrorDiag": "",
[2026-02-02 04:20:52]  *** Listing of results directory ***
[2026-02-02 04:20:52] total 658740
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc      5111 Feb  1 12:00 queuedata.json
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc    584422 Feb  1 12:00 pilot3.tar.gz
[2026-02-02 04:20:52] -rwx------ 1 boinc boinc     36322 Feb  1 12:00 runpilot2-wrapper.sh
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc       100 Feb  2 03:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 04:20:52] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 03:08 run_atlas
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc       105 Feb  2 03:08 job.xml
[2026-02-02 04:20:52] -rw-r--r-- 2 boinc boinc 490010980 Feb  2 03:08 EVNT.48310747._000029.pool.root.1
[2026-02-02 04:20:52] -rw-r--r-- 2 boinc boinc    597758 Feb  2 03:08 input.tar.gz
[2026-02-02 04:20:52] -rw-r--r-- 2 boinc boinc     15845 Feb  2 03:08 start_atlas.sh
[2026-02-02 04:20:52] drwxrwx--x 2 boinc boinc      4096 Feb  2 03:08 shared
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc         0 Feb  2 03:08 boinc_setup_complete
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc      6448 Feb  2 03:08 init_data.xml
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc         0 Feb  2 03:08 boinc_lockfile
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc      2522 Feb  2 03:08 pandaJob.out
[2026-02-02 04:20:52] -rw------- 1 boinc boinc   1009765 Feb  2 03:08 agis_schedconf.cvmfs.json
[2026-02-02 04:20:52] -rw------- 1 boinc boinc   1511668 Feb  2 03:08 agis_ddmendpoints.agis.ALL.json
[2026-02-02 04:20:52] -rw------- 1 boinc boinc       427 Feb  2 03:08 workernode_map.json
[2026-02-02 04:20:52] drwx------ 5 boinc boinc      4096 Feb  2 03:08 pilot3
[2026-02-02 04:20:52] -rw------- 1 boinc boinc 178804358 Feb  2 04:19 HITS.48310749._001433.pool.root.1
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc       530 Feb  2 04:20 boinc_task_state.xml
[2026-02-02 04:20:52] -rw------- 1 boinc boinc      1030 Feb  2 04:20 memory_monitor_summary.json
[2026-02-02 04:20:52] -rw------- 1 boinc boinc    269722 Feb  2 04:20 log.48310749._001433.job.log.tgz.1
[2026-02-02 04:20:52] -rw------- 1 boinc boinc      6307 Feb  2 04:20 heartbeat.json
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc      8192 Feb  2 04:20 boinc_mmap_file
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc        27 Feb  2 04:20 wrapper_checkpoint.txt
[2026-02-02 04:20:52] -rw------- 1 boinc boinc       747 Feb  2 04:20 pilotlog.txt
[2026-02-02 04:20:52] -rw------- 1 boinc boinc        95 Feb  2 04:20 pilot_heartbeat.json
[2026-02-02 04:20:52] -rw------- 1 boinc boinc    638848 Feb  2 04:20 log.48310749._001433.job.log.1
[2026-02-02 04:20:52] -rw------- 1 boinc boinc       357 Feb  2 04:20 output.list
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc       620 Feb  2 04:20 runtime_log
[2026-02-02 04:20:52] -rw------- 1 boinc boinc    921600 Feb  2 04:20 result.tar.gz
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc      8916 Feb  2 04:20 runtime_log.err
[2026-02-02 04:20:52] -rw------- 1 boinc boinc       661 Feb  2 04:20 1JYKDm2Mk68n9Rq4apOajLDm4fhM0noT9bVooX4SDmHfPKDmjd3XBn.diag
[2026-02-02 04:20:52] -rw-r--r-- 1 boinc boinc     11144 Feb  2 04:20 stderr.txt
[2026-02-02 04:20:52] HITS file was successfully produced:
[2026-02-02 04:20:52] -rw------- 1 boinc boinc 178804358 Feb  2 04:19 shared/HITS.pool.root.1
[2026-02-02 04:20:52]  *** Contents of shared directory: ***
[2026-02-02 04:20:52] total 654652
[2026-02-02 04:20:52] -rw-r--r-- 2 boinc boinc 490010980 Feb  2 03:08 ATLAS.root_0
[2026-02-02 04:20:52] -rw-r--r-- 2 boinc boinc    597758 Feb  2 03:08 input.tar.gz
[2026-02-02 04:20:52] -rw-r--r-- 2 boinc boinc     15845 Feb  2 03:08 start_atlas.sh
[2026-02-02 04:20:52] -rw------- 1 boinc boinc 178804358 Feb  2 04:19 HITS.pool.root.1
[2026-02-02 04:20:52] -rw------- 1 boinc boinc    921600 Feb  2 04:20 result.tar.gz
04:20:53 (2397500): run_atlas exited; CPU time 12261.914355
04:20:53 (2397500): called boinc_finish(0)

</stderr_txt>
]]>

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