Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:40:21 (644292): wrapper (7.7.26015): starting
19:40:21 (644292): wrapper: running run_atlas (--nthreads 4)
[2026-02-01 19:40:21] Arguments: --nthreads 4
[2026-02-01 19:40:21] Threads: 4
[2026-02-01 19:40:21] Checking for CVMFS
[2026-02-01 19:40:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 19:40:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 19:40:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 19:40:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 19:40:21] 2.9.2.0 3119 3285 95648 155759 0 50 21162242 36864001 0 130560 0 1807681 99.988 112469 14111 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 19:40:21] CVMFS is ok
[2026-02-01 19:40:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 19:40:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 19:40:21] Further information can be found at the LHC@home message board.
[2026-02-01 19:40:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 19:40:21] Checking for apptainer binary...
[2026-02-01 19:40:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 19:40:21] Running /usr/bin/apptainer --version
[2026-02-01 19:40:21] apptainer version 1.4.1-1.1
[2026-02-01 19:40:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 19:40:22] thA381
[2026-02-01 19:40:22] apptainer works
[2026-02-01 19:40:22] Set ATHENA_PROC_NUMBER=4
[2026-02-01 19:40:22] Set ATHENA_CORE_NUMBER=4
[2026-02-01 19:40:22] Starting ATLAS job with PandaID=6994861152
[2026-02-01 19:40:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 20:56:02]  *** The last 200 lines of the pilot log: ***
[2026-02-01 20:56:02] 2026-02-01 19:55:31,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 20:56:02] 2026-02-01 19:55:31,064 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 20:56:02] 2026-02-01 19:55:31,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 20:56:02] 2026-02-01 19:55:31,064 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 20:56:02] 2026-02-01 19:55:31,064 | INFO     | job 6994861152 has completed (purged errors)
[2026-02-01 20:56:02] 2026-02-01 19:55:31,064 | INFO     | overall cleanup function is called
[2026-02-01 20:56:02] 2026-02-01 19:55:32,071 | INFO     | --- collectZombieJob: --- 10, [652929]
[2026-02-01 20:56:02] 2026-02-01 19:55:32,071 | INFO     | zombie collector waiting for pid 652929
[2026-02-01 20:56:02] 2026-02-01 19:55:32,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 20:56:02] 2026-02-01 19:55:32,071 | INFO     | collected zombie processes
[2026-02-01 20:56:02] 2026-02-01 19:55:32,072 | INFO     | will attempt to kill all subprocesses of pid=652929
[2026-02-01 20:56:02] 2026-02-01 19:55:32,114 | INFO     | process IDs to be killed: [652929] (in reverse order)
[2026-02-01 20:56:02] 2026-02-01 19:55:32,146 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 20:56:02] 2026-02-01 19:55:32,146 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 20:56:02] 2026-02-01 19:55:32,148 | INFO     | did not find any defunct processes belonging to 652929
[2026-02-01 20:56:02] 2026-02-01 19:55:32,149 | INFO     | did not find any defunct processes belonging to 652929
[2026-02-01 20:56:02] 2026-02-01 19:55:32,149 | INFO     | ready for new job
[2026-02-01 20:56:02] 2026-02-01 19:55:32,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 20:56:02] 2026-02-01 19:55:32,150 | INFO     | **************************************
[2026-02-01 20:56:02] 2026-02-01 19:55:32,150 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 20:56:02] 2026-02-01 19:55:32,150 | INFO     | **************************************
[2026-02-01 20:56:02] 2026-02-01 19:55:32,150 | INFO     | 
[2026-02-01 20:56:02] 2026-02-01 19:55:32,150 | INFO     | architecture information:
[2026-02-01 20:56:02] 2026-02-01 19:55:32,151 | INFO     | executing command: cat /etc/os-release
[2026-02-01 20:56:02] 2026-02-01 19:55:32,165 | INFO     | cat /etc/os-release:
[2026-02-01 20:56:02] NAME="CentOS Linux"
[2026-02-01 20:56:02] VERSION="7 (Core)"
[2026-02-01 20:56:02] ID="centos"
[2026-02-01 20:56:02] ID_LIKE="rhel fedora"
[2026-02-01 20:56:02] VERSION_ID="7"
[2026-02-01 20:56:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 20:56:02] ANSI_COLOR="0;31"
[2026-02-01 20:56:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 20:56:02] HOME_URL="https://www.centos.org/"
[2026-02-01 20:56:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 20:56:02] 
[2026-02-01 20:56:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 20:56:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 20:56:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 20:56:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 20:56:02] 
[2026-02-01 20:56:02] 2026-02-01 19:55:32,165 | INFO     | **************************************
[2026-02-01 20:56:02] 2026-02-01 19:55:32,668 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 20:56:02] 2026-02-01 19:55:32,686 | INFO     | sufficient remaining disk space (235109613568 B)
[2026-02-01 20:56:02] 2026-02-01 19:55:32,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 20:56:02] 2026-02-01 19:55:32,687 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 20:56:02] 2026-02-01 19:55:32,687 | INFO     | update_server=False
[2026-02-01 20:56:02] 2026-02-01 19:55:32,687 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 20:56:02] 2026-02-01 19:55:32,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 20:56:02] 2026-02-01 19:55:32,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 20:56:02] 2026-02-01 19:55:32,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 20:56:02] 2026-02-01 19:55:32,716 | INFO     | aborting loop
[2026-02-01 20:56:02] 2026-02-01 19:55:33,078 | INFO     | all job control threads have been joined
[2026-02-01 20:56:02] 2026-02-01 19:55:33,223 | INFO     | all payload control threads have been joined
[2026-02-01 20:56:02] 2026-02-01 19:55:33,692 | INFO     | [job] retrieve thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:33,693 | INFO     | [job] queue monitor thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:33,722 | INFO     | [job] job monitor thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:33,726 | INFO     | all data control threads have been joined
[2026-02-01 20:56:02] 2026-02-01 19:55:33,730 | INFO     | [payload] failed_post thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:33,730 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:33,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 20:56:02] 2026-02-01 19:55:34,084 | INFO     | [job] control thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,229 | INFO     | [payload] control thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,268 | INFO     | [payload] validate_post thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,732 | INFO     | [data] control thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,764 | INFO     | [job] validate thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,783 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,839 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:34,918 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:35,080 | INFO     | [data] copytool_in thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:35,985 | INFO     | [data] copytool_out thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:36,694 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 20:56:02] 2026-02-01 19:55:38,803 | INFO     | [monitor] cgroup control has ended
[2026-02-01 20:56:02] 2026-02-01 19:55:39,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651016697664)>', '<ExcThread(monitor, started 140649575741184)>']
[2026-02-01 20:56:02] 2026-02-01 19:55:44,512 | INFO     | all workflow threads have been joined
[2026-02-01 20:56:02] 2026-02-01 19:55:44,512 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 20:56:02] 2026-02-01 19:55:44,513 | INFO     | traces error code: 0
[2026-02-01 20:56:02] 2026-02-01 19:55:44,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 20:56:02] 2026-02-01 19:56:02,244 | INFO     | PID=648413 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-01 20:56:02] 2026-02-01 19:56:02,244 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 20:56:02] 2026-02-01 19:56:02,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 20:56:02] 2026-02-01 19:56:02,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 20:56:02] 2026-02-01 19:56:02,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 20:56:02] 2026-02-01 19:56:02,244 | INFO     | [monitor] control thread has ended
[2026-02-01 20:56:02] 2026-02-01 19:56:02,319 [wrapper] ==== pilot stdout END ====
[2026-02-01 20:56:02] 2026-02-01 19:56:02,324 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 20:56:02] 2026-02-01 19:56:02,328 [wrapper] pilotpid: 648413
[2026-02-01 20:56:02] 2026-02-01 19:56:02,332 [wrapper] Pilot exit status: 0
[2026-02-01 20:56:02] 2026-02-01 19:56:02,344 [wrapper] pandaids: 6994861152
[2026-02-01 20:56:02] 2026-02-01 19:56:02,366 [wrapper] cleanup supervisor_pilot  658256 648414
[2026-02-01 20:56:02] 2026-02-01 19:56:02,370 [wrapper] Test setup, not cleaning
[2026-02-01 20:56:02] 2026-02-01 19:56:02,374 [wrapper] apfmon messages muted
[2026-02-01 20:56:02] 2026-02-01 19:56:02,378 [wrapper] ==== wrapper stdout END ====
[2026-02-01 20:56:02] 2026-02-01 19:56:02,382 [wrapper] ==== wrapper stderr END ====
[2026-02-01 20:56:02]  *** Error codes and diagnostics ***
[2026-02-01 20:56:02]     "exeErrorCode": 0,
[2026-02-01 20:56:02]     "exeErrorDiag": "",
[2026-02-01 20:56:02]     "pilotErrorCode": 0,
[2026-02-01 20:56:02]     "pilotErrorDiag": "",
[2026-02-01 20:56:02]  *** Listing of results directory ***
[2026-02-01 20:56:02] total 668480
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc      5111 Jan 31 17:25 queuedata.json
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc    584422 Jan 31 17:25 pilot3.tar.gz
[2026-02-01 20:56:02] -rwx------ 1 boinc boinc     36322 Jan 31 17:25 runpilot2-wrapper.sh
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc       100 Feb  1 19:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 20:56:02] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 19:40 run_atlas
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc       105 Feb  1 19:40 job.xml
[2026-02-01 20:56:02] -rw-r--r-- 2 boinc boinc 492904433 Feb  1 19:40 EVNT.48317889._000070.pool.root.1
[2026-02-01 20:56:02] -rw-r--r-- 2 boinc boinc    597751 Feb  1 19:40 input.tar.gz
[2026-02-01 20:56:02] -rw-r--r-- 2 boinc boinc     15845 Feb  1 19:40 start_atlas.sh
[2026-02-01 20:56:02] drwxrwx--x 2 boinc boinc      4096 Feb  1 19:40 shared
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc         0 Feb  1 19:40 boinc_setup_complete
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc      6376 Feb  1 19:40 init_data.xml
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc         0 Feb  1 19:40 boinc_lockfile
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc      2520 Feb  1 19:40 pandaJob.out
[2026-02-01 20:56:02] -rw------- 1 boinc boinc   1009765 Feb  1 19:40 agis_schedconf.cvmfs.json
[2026-02-01 20:56:02] -rw------- 1 boinc boinc   1511668 Feb  1 19:40 agis_ddmendpoints.agis.ALL.json
[2026-02-01 20:56:02] -rw------- 1 boinc boinc       427 Feb  1 19:40 workernode_map.json
[2026-02-01 20:56:02] drwx------ 5 boinc boinc      4096 Feb  1 19:40 pilot3
[2026-02-01 20:56:02] -rw------- 1 boinc boinc 185843721 Feb  1 20:55 HITS.48317892._003635.pool.root.1
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc       530 Feb  1 20:55 boinc_task_state.xml
[2026-02-01 20:56:02] -rw------- 1 boinc boinc      1022 Feb  1 20:55 memory_monitor_summary.json
[2026-02-01 20:56:02] -rw------- 1 boinc boinc    265135 Feb  1 20:55 log.48317892._003635.job.log.tgz.1
[2026-02-01 20:56:02] -rw------- 1 boinc boinc      6311 Feb  1 20:55 heartbeat.json
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc      8192 Feb  1 20:55 boinc_mmap_file
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc        27 Feb  1 20:55 wrapper_checkpoint.txt
[2026-02-01 20:56:02] -rw------- 1 boinc boinc       746 Feb  1 20:56 pilotlog.txt
[2026-02-01 20:56:02] -rw------- 1 boinc boinc        95 Feb  1 20:56 pilot_heartbeat.json
[2026-02-01 20:56:02] -rw------- 1 boinc boinc    663144 Feb  1 20:56 log.48317892._003635.job.log.1
[2026-02-01 20:56:02] -rw------- 1 boinc boinc       357 Feb  1 20:56 output.list
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc       620 Feb  1 20:56 runtime_log
[2026-02-01 20:56:02] -rw------- 1 boinc boinc    942080 Feb  1 20:56 result.tar.gz
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc      8896 Feb  1 20:56 runtime_log.err
[2026-02-01 20:56:02] -rw------- 1 boinc boinc       657 Feb  1 20:56 pczNDmpxS68n9Rq4apOajLDm4fhM0noT9bVooX4SDmY2NKDmBDW4cm.diag
[2026-02-01 20:56:02] -rw-r--r-- 1 boinc boinc     11197 Feb  1 20:56 stderr.txt
[2026-02-01 20:56:02] HITS file was successfully produced:
[2026-02-01 20:56:02] -rw------- 1 boinc boinc 185843721 Feb  1 20:55 shared/HITS.pool.root.1
[2026-02-01 20:56:02]  *** Contents of shared directory: ***
[2026-02-01 20:56:02] total 664372
[2026-02-01 20:56:02] -rw-r--r-- 2 boinc boinc 492904433 Feb  1 19:40 ATLAS.root_0
[2026-02-01 20:56:02] -rw-r--r-- 2 boinc boinc    597751 Feb  1 19:40 input.tar.gz
[2026-02-01 20:56:02] -rw-r--r-- 2 boinc boinc     15845 Feb  1 19:40 start_atlas.sh
[2026-02-01 20:56:02] -rw------- 1 boinc boinc 185843721 Feb  1 20:55 HITS.pool.root.1
[2026-02-01 20:56:02] -rw------- 1 boinc boinc    942080 Feb  1 20:56 result.tar.gz
20:56:04 (644292): run_atlas exited; CPU time 17066.072909
20:56:04 (644292): called boinc_finish(0)

</stderr_txt>
]]>

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