Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:06:17 (529018): wrapper (7.7.26015): starting
06:06:17 (529018): wrapper: running run_atlas (--nthreads 4)
[2026-02-03 06:06:17] Arguments: --nthreads 4
[2026-02-03 06:06:17] Threads: 4
[2026-02-03 06:06:17] Checking for CVMFS
[2026-02-03 06:06:17] No cvmfs_config command found, will try listing directly
[2026-02-03 06:06:17] CVMFS is ok
[2026-02-03 06:06:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-03 06:06:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-03 06:06:17] Further information can be found at the LHC@home message board.
[2026-02-03 06:06:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-03 06:06:17] Checking for apptainer binary...
[2026-02-03 06:06:17] which: no apptainer in ((null))
[2026-02-03 06:06:17] apptainer is not installed, using version from CVMFS
[2026-02-03 06:06:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-03 06:06:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-02-03 06:06:17] apptainer works
[2026-02-03 06:06:17] Set ATHENA_PROC_NUMBER=4
[2026-02-03 06:06:17] Set ATHENA_CORE_NUMBER=4
[2026-02-03 06:06:17] Starting ATLAS job with PandaID=6987929791
[2026-02-03 06:06:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-03 09:22:05]  *** The last 200 lines of the pilot log: ***
[2026-02-03 09:22:05] 2026-02-03 08:04:01,581 | INFO     | mean x: 1770100504.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,581 | INFO     | mean y: 2318868.8908045976
[2026-02-03 09:22:05] 2026-02-03 08:04:01,582 | INFO     | intersect: -16708339823.471424
[2026-02-03 09:22:05] 2026-02-03 08:04:01,582 | INFO     | chi2: 1.238001625635595
[2026-02-03 09:22:05] 2026-02-03 08:04:01,582 | INFO     | sum of square deviations: 1496660620.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,583 | INFO     | sum of deviations: 14890259636.999996
[2026-02-03 09:22:05] 2026-02-03 08:04:01,583 | INFO     | mean x: 1770100352.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,583 | INFO     | mean y: 2318277.449704142
[2026-02-03 09:22:05] 2026-02-03 08:04:01,583 | INFO     | intersect: -17608390170.819008
[2026-02-03 09:22:05] 2026-02-03 08:04:01,584 | INFO     | chi2: 1.2389789374010338
[2026-02-03 09:22:05] 2026-02-03 08:04:01,584 | INFO     | current chi2=1.2389789374010338 (change=-0.07894268837789678 %)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,584 | INFO     | right removable region: 168
[2026-02-03 09:22:05] 2026-02-03 08:04:01,584 | INFO     | sum of square deviations: 1496660620.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,585 | INFO     | sum of deviations: -470462439.00000006
[2026-02-03 09:22:05] 2026-02-03 08:04:01,585 | INFO     | mean x: 1770100657.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,585 | INFO     | mean y: 2336177.5562130176
[2026-02-03 09:22:05] 2026-02-03 08:04:01,585 | INFO     | intersect: 558752148.7118666
[2026-02-03 09:22:05] 2026-02-03 08:04:01,585 | INFO     | chi2: 0.05434593933392625
[2026-02-03 09:22:05] 2026-02-03 08:04:01,586 | INFO     | current chi2=0.05434593933392625 (change=95.61018837063119 %)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,586 | INFO     | sum of square deviations: 1367709365.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,587 | INFO     | sum of deviations: 3678464059.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,587 | INFO     | mean x: 1770100809.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,587 | INFO     | mean y: 2331345.0060975607
[2026-02-03 09:22:05] 2026-02-03 08:04:01,587 | INFO     | intersect: -4758367364.86755
[2026-02-03 09:22:05] 2026-02-03 08:04:01,587 | INFO     | chi2: 0.0009986373779142783
[2026-02-03 09:22:05] 2026-02-03 08:04:01,587 | INFO     | current chi2=0.0009986373779142783 (change=98.16244343155392 %)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,588 | INFO     | sum of square deviations: 1246386160.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,588 | INFO     | sum of deviations: 2814129531.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,589 | INFO     | mean x: 1770100962.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,589 | INFO     | mean y: 2332429.06918239
[2026-02-03 09:22:05] 2026-02-03 08:04:01,589 | INFO     | intersect: -3994256709.8985586
[2026-02-03 09:22:05] 2026-02-03 08:04:01,589 | INFO     | chi2: 0.0004931927397446086
[2026-02-03 09:22:05] 2026-02-03 08:04:01,589 | INFO     | current chi2=0.0004931927397446086 (change=50.61343079560321 %)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,589 | INFO     | sum of square deviations: 1132458442.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,590 | INFO     | sum of deviations: 2340032742.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,590 | INFO     | mean x: 1770101114.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,590 | INFO     | mean y: 2333061.0324675324
[2026-02-03 09:22:05] 2026-02-03 08:04:01,590 | INFO     | intersect: -3655279801.406625
[2026-02-03 09:22:05] 2026-02-03 08:04:01,591 | INFO     | chi2: 0.0003888585447327789
[2026-02-03 09:22:05] 2026-02-03 08:04:01,591 | INFO     | current chi2=0.0003888585447327789 (change=21.154852171152676 %)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,591 | INFO     | left removable region: 40
[2026-02-03 09:22:05] 2026-02-03 08:04:01,591 | INFO     | sum of square deviations: 650252192.0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,592 | INFO     | sum of deviations: 1066444303.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,592 | INFO     | mean x: 1770101541.5
[2026-02-03 09:22:05] 2026-02-03 08:04:01,592 | INFO     | mean y: 2334745.6015625
[2026-02-03 09:22:05] 2026-02-03 08:04:01,592 | INFO     | intersect: -2900715376.75657
[2026-02-03 09:22:05] 2026-02-03 08:04:01,592 | INFO     | chi2: 0.0002730927985213328
[2026-02-03 09:22:05] 2026-02-03 08:04:01,592 | INFO     | current memory leak: 1.64 B/s (using 128 data points, chi2=0.00)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | could have reported an average CPU frequency of 2727 MHz (9 samples)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | ..............................
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . Timing measurements:
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . get job = 0 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . initial setup = 8 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . payload setup = 9 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . stage-in = 0 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . payload execution = 10614 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . stage-out = 0 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | . log creation = 0 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,593 | INFO     | ..............................
[2026-02-03 09:22:05] 2026-02-03 08:04:01,682 | INFO     | 
[2026-02-03 09:22:05] 2026-02-03 08:04:01,682 | INFO     | job summary report
[2026-02-03 09:22:05] 2026-02-03 08:04:01,682 | INFO     | --------------------------------------------------
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | PanDA job id: 6987929791
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | task id: 48318042
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | errors: (none)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | pilot state: finished 
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | transexitcode: 0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | exeerrorcode: 0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | exeerrordiag: 
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | exitcode: 0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | exitmsg: OK
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | cpuconsumptiontime: 40693 s
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | nevents: 400
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | neventsw: 0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,683 | INFO     | pid: 538214
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | pgrp: 538214
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | corecount: 4
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | event service: False
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | sizes: {0: 2278092, 1: 2278298, 11: 2278326, 10627: 2307601, 10628: 2316678, 10629: 2316678, 10631: 2317064}
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | --------------------------------------------------
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | 
[2026-02-03 09:22:05] 2026-02-03 08:04:01,684 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/0
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,717 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,718 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,718 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-03 09:22:05] 2026-02-03 08:04:01,718 | INFO     | job 6987929791 has completed (purged errors)
[2026-02-03 09:22:05] 2026-02-03 08:04:01,718 | INFO     | overall cleanup function is called
[2026-02-03 09:22:05] 2026-02-03 08:04:02,729 | INFO     | --- collectZombieJob: --- 10, [538214]
[2026-02-03 09:22:05] 2026-02-03 08:04:02,730 | INFO     | zombie collector waiting for pid 538214
[2026-02-03 09:22:05] 2026-02-03 08:04:02,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-03 09:22:05] 2026-02-03 08:04:02,730 | INFO     | collected zombie processes
[2026-02-03 09:22:05] 2026-02-03 08:04:02,730 | INFO     | will attempt to kill all subprocesses of pid=538214
[2026-02-03 09:22:05] 2026-02-03 08:04:03,364 | WARNING  | process 538214 can no longer be monitored (due to stat problems) - aborting
[2026-02-03 09:22:05] 2026-02-03 08:04:05,142 | INFO     | process IDs to be killed: [538214] (in reverse order)
[2026-02-03 09:22:05] 2026-02-03 08:04:05,178 | INFO     | using path: /scratch/boinc/var/slot120/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-03 09:22:05] 2026-02-03 08:04:05,398 | WARNING  | found no corresponding commands to process id(s)
[2026-02-03 09:22:05] 2026-02-03 08:04:05,399 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-03 09:22:05] 2026-02-03 08:04:05,480 | INFO     | did not find any defunct processes belonging to 538214
[2026-02-03 09:22:05] 2026-02-03 08:04:05,553 | INFO     | did not find any defunct processes belonging to 538214
[2026-02-03 09:22:05] 2026-02-03 08:04:05,553 | INFO     | ready for new job
[2026-02-03 09:22:05] 2026-02-03 08:04:05,553 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-03 09:22:05] 2026-02-03 08:04:05,556 | INFO     | **************************************
[2026-02-03 09:22:05] 2026-02-03 08:04:05,556 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-03 09:22:05] 2026-02-03 08:04:05,556 | INFO     | **************************************
[2026-02-03 09:22:05] 2026-02-03 08:04:05,556 | INFO     | 
[2026-02-03 09:22:05] 2026-02-03 08:04:05,567 | INFO     | architecture information:
[2026-02-03 09:22:05] 2026-02-03 08:04:05,567 | INFO     | executing command: cat /etc/os-release
[2026-02-03 09:22:05] 2026-02-03 08:04:05,593 | INFO     | cat /etc/os-release:
[2026-02-03 09:22:05] NAME="CentOS Linux"
[2026-02-03 09:22:05] VERSION="7 (Core)"
[2026-02-03 09:22:05] ID="centos"
[2026-02-03 09:22:05] ID_LIKE="rhel fedora"
[2026-02-03 09:22:05] VERSION_ID="7"
[2026-02-03 09:22:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-03 09:22:05] ANSI_COLOR="0;31"
[2026-02-03 09:22:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-03 09:22:05] HOME_URL="https://www.centos.org/"
[2026-02-03 09:22:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-03 09:22:05] 
[2026-02-03 09:22:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-03 09:22:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-03 09:22:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-03 09:22:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-03 09:22:05] 
[2026-02-03 09:22:05] 2026-02-03 08:04:05,593 | INFO     | **************************************
[2026-02-03 09:22:05] 2026-02-03 08:04:06,015 | INFO     | number of running child processes to parent process 538214: 1
[2026-02-03 09:22:05] 2026-02-03 08:04:06,015 | INFO     | maximum number of monitored processes: 6
[2026-02-03 09:22:05] 2026-02-03 08:04:06,015 | INFO     | aborting job monitoring since job object (job id=6987929791) has expired
[2026-02-03 09:22:05] 2026-02-03 08:04:06,095 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/0
[2026-02-03 09:22:05] 2026-02-03 08:04:06,120 | INFO     | sufficient remaining disk space (3250088574976 B)
[2026-02-03 09:22:05] 2026-02-03 08:04:06,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-03 09:22:05] 2026-02-03 08:04:06,120 | INFO     | current server update state: UPDATING_FINAL
[2026-02-03 09:22:05] 2026-02-03 08:04:06,120 | INFO     | update_server=False
[2026-02-03 09:22:05] 2026-02-03 08:04:06,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-03 09:22:05] 2026-02-03 08:04:06,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-03 09:22:05] 2026-02-03 08:04:06,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-03 09:22:05] 2026-02-03 08:04:06,124 | INFO     | will abort loop
[2026-02-03 09:22:05] 2026-02-03 08:04:06,284 | INFO     | all data control threads have been joined
[2026-02-03 09:22:05] 2026-02-03 08:04:06,691 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-03 09:22:05] 2026-02-03 08:04:07,084 | INFO     | all job control threads have been joined
[2026-02-03 09:22:05] 2026-02-03 08:04:07,125 | INFO     | [job] job monitor thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,126 | INFO     | [job] retrieve thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,191 | INFO     | all payload control threads have been joined
[2026-02-03 09:22:05] 2026-02-03 08:04:07,256 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-03 09:22:05] 2026-02-03 08:04:07,290 | INFO     | [data] control thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,320 | INFO     | [payload] validate_post thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,433 | INFO     | [job] create_data_payload thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,587 | INFO     | [payload] validate_pre thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,673 | INFO     | [data] copytool_in thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:07,697 | INFO     | [job] queue monitor thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:08,090 | INFO     | [job] control thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:08,199 | INFO     | [payload] control thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:08,224 | INFO     | [payload] execute_payloads thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:08,286 | INFO     | [payload] failed_post thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:08,570 | INFO     | [job] validate thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:09,262 | INFO     | [data] copytool_out thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:10,128 | INFO     | [data] queue_monitor thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:17,124 | INFO     | job.realtimelogging is not enabled
[2026-02-03 09:22:05] 2026-02-03 08:04:18,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-03 09:22:05] 2026-02-03 08:04:34,901 | INFO     | PID=533016 has CPU usage=17.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-03 09:22:05] 2026-02-03 08:04:34,901 | INFO     | .. there are 7 such processes running
[2026-02-03 09:22:05] 2026-02-03 08:04:34,902 | INFO     | found 0 job(s) in 20 queues
[2026-02-03 09:22:05] 2026-02-03 08:04:34,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-03 09:22:05] 2026-02-03 08:04:34,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-03 09:22:05] 2026-02-03 08:04:56,167 | INFO     | [monitor] cgroup control has ended
[2026-02-03 09:22:05] 2026-02-03 08:04:57,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23395881686848)>', '<ExcThread(monitor, started 23395640284928)>']
[2026-02-03 09:22:05] 2026-02-03 08:04:58,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-03 09:22:05] 2026-02-03 08:04:58,010 | INFO     | [monitor] control thread has ended
[2026-02-03 09:22:05] 2026-02-03 08:05:02,766 | INFO     | all workflow threads have been joined
[2026-02-03 09:22:05] 2026-02-03 08:05:02,766 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-03 09:22:05] 2026-02-03 08:05:02,766 | INFO     | traces error code: 0
[2026-02-03 09:22:05] 2026-02-03 08:05:02,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-03 09:22:05] 2026-02-03 08:05:02,951 [wrapper] ==== pilot stdout END ====
[2026-02-03 09:22:05] 2026-02-03 08:05:02,954 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-03 09:22:05] 2026-02-03 08:05:02,958 [wrapper] pilotpid: 533016
[2026-02-03 09:22:05] 2026-02-03 08:05:02,962 [wrapper] Pilot exit status: 0
[2026-02-03 09:22:05] 2026-02-03 08:05:02,976 [wrapper] pandaids: 6987929791
[2026-02-03 09:22:05] 2026-02-03 08:05:03,150 [wrapper] cleanup supervisor_pilot  701644 533017
[2026-02-03 09:22:05] 2026-02-03 08:05:03,154 [wrapper] Test setup, not cleaning
[2026-02-03 09:22:05] 2026-02-03 08:05:03,158 [wrapper] apfmon messages muted
[2026-02-03 09:22:05] 2026-02-03 08:05:03,162 [wrapper] ==== wrapper stdout END ====
[2026-02-03 09:22:05] 2026-02-03 08:05:03,165 [wrapper] ==== wrapper stderr END ====
[2026-02-03 09:22:05]  *** Error codes and diagnostics ***
[2026-02-03 09:22:05]     "exeErrorCode": 0,
[2026-02-03 09:22:05]     "exeErrorDiag": "",
[2026-02-03 09:22:05]     "pilotErrorCode": 0,
[2026-02-03 09:22:05]     "pilotErrorDiag": "",
[2026-02-03 09:22:05]  *** Listing of results directory ***
[2026-02-03 09:22:05] total 672516
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc    584422 Jan 30 19:43 pilot3.tar.gz
[2026-02-03 09:22:05] -rwx------ 1 boinc boinc     36322 Jan 30 19:44 runpilot2-wrapper.sh
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc      5111 Jan 30 19:44 queuedata.json
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc       100 Feb  3 06:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-03 09:22:05] -rwxr-xr-x 1 boinc boinc      7986 Feb  3 06:06 run_atlas
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc       105 Feb  3 06:06 job.xml
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc      6692 Feb  3 06:06 init_data.xml
[2026-02-03 09:22:05] -rw-r--r-- 2 boinc boinc 496148105 Feb  3 06:06 EVNT.48318040._000053.pool.root.1
[2026-02-03 09:22:05] drwxrwx--x 2 boinc boinc      4096 Feb  3 06:06 shared
[2026-02-03 09:22:05] -rw-r--r-- 2 boinc boinc    597769 Feb  3 06:06 input.tar.gz
[2026-02-03 09:22:05] -rw-r--r-- 2 boinc boinc     15845 Feb  3 06:06 start_atlas.sh
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc         0 Feb  3 06:06 boinc_lockfile
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc      2536 Feb  3 06:06 pandaJob.out
[2026-02-03 09:22:05] -rw------- 1 boinc boinc   1009324 Feb  3 06:06 agis_schedconf.cvmfs.json
[2026-02-03 09:22:05] -rw------- 1 boinc boinc   1511668 Feb  3 06:06 agis_ddmendpoints.agis.ALL.json
[2026-02-03 09:22:05] -rw------- 1 boinc boinc       444 Feb  3 06:06 workernode_map.json
[2026-02-03 09:22:05] drwx------ 5 boinc boinc      4096 Feb  3 06:06 pilot3
[2026-02-03 09:22:05] -rw------- 1 boinc boinc 184834075 Feb  3 09:03 HITS.48318042._002750.pool.root.1
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc       529 Feb  3 09:03 boinc_task_state.xml
[2026-02-03 09:22:05] -rw------- 1 boinc boinc      1029 Feb  3 09:03 memory_monitor_summary.json
[2026-02-03 09:22:05] -rw------- 1 boinc boinc    383246 Feb  3 09:03 log.48318042._002750.job.log.tgz.1
[2026-02-03 09:22:05] -rw------- 1 boinc boinc      6356 Feb  3 09:04 heartbeat.json
[2026-02-03 09:22:05] -rw------- 1 boinc boinc        95 Feb  3 09:04 pilot_heartbeat.json
[2026-02-03 09:22:05] -rw------- 1 boinc boinc      5192 Feb  3 09:05 pilotlog.txt
[2026-02-03 09:22:05] -rw------- 1 boinc boinc   1485316 Feb  3 09:05 log.48318042._002750.job.log.1
[2026-02-03 09:22:05] -rw------- 1 boinc boinc       357 Feb  3 09:05 output.list
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc       620 Feb  3 09:05 runtime_log
[2026-02-03 09:22:05] -rw------- 1 boinc boinc   1884160 Feb  3 09:05 result.tar.gz
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc      9222 Feb  3 09:05 runtime_log.err
[2026-02-03 09:22:05] -rw------- 1 boinc boinc       666 Feb  3 09:05 jbNKDmge858nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvwLKDm09HVOm.diag
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc        26 Feb  3 09:21 wrapper_checkpoint.txt
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc      8192 Feb  3 09:22 boinc_mmap_file
[2026-02-03 09:22:05] -rw-r--r-- 1 boinc boinc     20828 Feb  3 09:22 stderr.txt
[2026-02-03 09:22:05] HITS file was successfully produced:
[2026-02-03 09:22:05] -rw------- 1 boinc boinc 184834075 Feb  3 09:03 shared/HITS.pool.root.1
[2026-02-03 09:22:05]  *** Contents of shared directory: ***
[2026-02-03 09:22:05] total 667472
[2026-02-03 09:22:05] -rw-r--r-- 2 boinc boinc 496148105 Feb  3 06:06 ATLAS.root_0
[2026-02-03 09:22:05] -rw-r--r-- 2 boinc boinc    597769 Feb  3 06:06 input.tar.gz
[2026-02-03 09:22:05] -rw-r--r-- 2 boinc boinc     15845 Feb  3 06:06 start_atlas.sh
[2026-02-03 09:22:05] -rw------- 1 boinc boinc 184834075 Feb  3 09:03 HITS.pool.root.1
[2026-02-03 09:22:05] -rw------- 1 boinc boinc   1884160 Feb  3 09:05 result.tar.gz
09:22:06 (529018): run_atlas exited; CPU time 41466.587185
09:22:06 (529018): called boinc_finish(0)

</stderr_txt>
]]>

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