Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:43:58 (2326855): wrapper (7.7.26015): starting
19:43:58 (2326855): wrapper: running run_atlas (--nthreads 3)
[2026-02-01 19:43:58] Arguments: --nthreads 3
[2026-02-01 19:43:58] Threads: 3
[2026-02-01 19:43:58] Checking for CVMFS
[2026-02-01 19:43:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 19:43:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 19:43:59] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 19:43:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 19:43:59] 2.9.2.0 1381994 5942 85936 155759 2 50 25989088 36864000 0 130560 0 2720277 99.986 193298 17440 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 19:43:59] CVMFS is ok
[2026-02-01 19:43:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 19:43:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 19:43:59] Further information can be found at the LHC@home message board.
[2026-02-01 19:43:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 19:43:59] Checking for apptainer binary...
[2026-02-01 19:43:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 19:43:59] Running /usr/bin/apptainer --version
[2026-02-01 19:43:59] apptainer version 1.4.1-1.1
[2026-02-01 19:43:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 19:43:59] magicA161a
[2026-02-01 19:43:59] apptainer works
[2026-02-01 19:43:59] Set ATHENA_PROC_NUMBER=3
[2026-02-01 19:43:59] Set ATHENA_CORE_NUMBER=3
[2026-02-01 19:43:59] Starting ATLAS job with PandaID=6991382647
[2026-02-01 19:43:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 20:57:19]  *** The last 200 lines of the pilot log: ***
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,613 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,614 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 20:57:19] 2026-02-01 19:56:45,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,614 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 20:57:19] 2026-02-01 19:56:45,614 | INFO     | job 6991382647 has completed (purged errors)
[2026-02-01 20:57:19] 2026-02-01 19:56:45,614 | INFO     | overall cleanup function is called
[2026-02-01 20:57:19] 2026-02-01 19:56:46,620 | INFO     | --- collectZombieJob: --- 10, [2335310]
[2026-02-01 20:57:19] 2026-02-01 19:56:46,620 | INFO     | zombie collector waiting for pid 2335310
[2026-02-01 20:57:19] 2026-02-01 19:56:46,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 20:57:19] 2026-02-01 19:56:46,621 | INFO     | collected zombie processes
[2026-02-01 20:57:19] 2026-02-01 19:56:46,621 | INFO     | will attempt to kill all subprocesses of pid=2335310
[2026-02-01 20:57:19] 2026-02-01 19:56:46,663 | INFO     | process IDs to be killed: [2335310] (in reverse order)
[2026-02-01 20:57:19] 2026-02-01 19:56:46,686 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 20:57:19] 2026-02-01 19:56:46,687 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 20:57:19] 2026-02-01 19:56:46,688 | INFO     | did not find any defunct processes belonging to 2335310
[2026-02-01 20:57:19] 2026-02-01 19:56:46,689 | INFO     | did not find any defunct processes belonging to 2335310
[2026-02-01 20:57:19] 2026-02-01 19:56:46,689 | INFO     | ready for new job
[2026-02-01 20:57:19] 2026-02-01 19:56:46,689 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 20:57:19] 2026-02-01 19:56:46,690 | INFO     | **************************************
[2026-02-01 20:57:19] 2026-02-01 19:56:46,690 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 20:57:19] 2026-02-01 19:56:46,690 | INFO     | **************************************
[2026-02-01 20:57:19] 2026-02-01 19:56:46,690 | INFO     | 
[2026-02-01 20:57:19] 2026-02-01 19:56:46,690 | INFO     | architecture information:
[2026-02-01 20:57:19] 2026-02-01 19:56:46,690 | INFO     | executing command: cat /etc/os-release
[2026-02-01 20:57:19] 2026-02-01 19:56:46,698 | INFO     | cat /etc/os-release:
[2026-02-01 20:57:19] NAME="CentOS Linux"
[2026-02-01 20:57:19] VERSION="7 (Core)"
[2026-02-01 20:57:19] ID="centos"
[2026-02-01 20:57:19] ID_LIKE="rhel fedora"
[2026-02-01 20:57:19] VERSION_ID="7"
[2026-02-01 20:57:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 20:57:19] ANSI_COLOR="0;31"
[2026-02-01 20:57:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 20:57:19] HOME_URL="https://www.centos.org/"
[2026-02-01 20:57:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 20:57:19] 
[2026-02-01 20:57:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 20:57:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 20:57:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 20:57:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 20:57:19] 
[2026-02-01 20:57:19] 2026-02-01 19:56:46,698 | INFO     | **************************************
[2026-02-01 20:57:19] 2026-02-01 19:56:47,199 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 20:57:19] 2026-02-01 19:56:47,212 | INFO     | sufficient remaining disk space (375699537920 B)
[2026-02-01 20:57:19] 2026-02-01 19:56:47,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 20:57:19] 2026-02-01 19:56:47,212 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 20:57:19] 2026-02-01 19:56:47,212 | INFO     | update_server=False
[2026-02-01 20:57:19] 2026-02-01 19:56:47,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 20:57:19] 2026-02-01 19:56:47,212 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 20:57:19] 2026-02-01 19:56:47,213 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 20:57:19] 2026-02-01 19:56:47,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 20:57:19] 2026-02-01 19:56:47,213 | INFO     | aborting loop
[2026-02-01 20:57:19] 2026-02-01 19:56:47,630 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 20:57:19] 2026-02-01 19:56:48,097 | INFO     | all data control threads have been joined
[2026-02-01 20:57:19] 2026-02-01 19:56:48,215 | INFO     | [job] job monitor thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:48,217 | INFO     | [job] retrieve thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:48,218 | INFO     | [job] queue monitor thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:48,386 | INFO     | all payload control threads have been joined
[2026-02-01 20:57:19] 2026-02-01 19:56:48,709 | INFO     | all job control threads have been joined
[2026-02-01 20:57:19] 2026-02-01 19:56:48,750 | INFO     | [job] validate thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:48,773 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:48,878 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:48,988 | INFO     | [data] copytool_in thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,057 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,102 | INFO     | [data] control thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,386 | INFO     | [payload] validate_post thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,392 | INFO     | [payload] control thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,569 | INFO     | [payload] failed_post thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,636 | INFO     | [data] copytool_out thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:49,715 | INFO     | [job] control thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:50,030 | INFO     | job.realtimelogging is not enabled
[2026-02-01 20:57:19] 2026-02-01 19:56:51,036 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:56:51,220 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 20:57:19] 2026-02-01 19:57:14,148 | INFO     | [monitor] cgroup control has ended
[2026-02-01 20:57:19] 2026-02-01 19:57:14,330 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573554374464)>', '<ExcThread(monitor, started 140572929025792)>']
[2026-02-01 20:57:19] 2026-02-01 19:57:17,132 | INFO     | PID=2330893 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 20:57:19] 2026-02-01 19:57:17,132 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 20:57:19] 2026-02-01 19:57:17,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 20:57:19] 2026-02-01 19:57:17,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 20:57:19] 2026-02-01 19:57:17,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 20:57:19] 2026-02-01 19:57:17,133 | INFO     | [monitor] control thread has ended
[2026-02-01 20:57:19] 2026-02-01 19:57:19,340 | INFO     | all workflow threads have been joined
[2026-02-01 20:57:19] 2026-02-01 19:57:19,340 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 20:57:19] 2026-02-01 19:57:19,340 | INFO     | traces error code: 0
[2026-02-01 20:57:19] 2026-02-01 19:57:19,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 20:57:19] 2026-02-01 19:57:19,390 [wrapper] ==== pilot stdout END ====
[2026-02-01 20:57:19] 2026-02-01 19:57:19,393 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 20:57:19] 2026-02-01 19:57:19,395 [wrapper] pilotpid: 2330893
[2026-02-01 20:57:19] 2026-02-01 19:57:19,398 [wrapper] Pilot exit status: 0
[2026-02-01 20:57:19] 2026-02-01 19:57:19,405 [wrapper] pandaids: 6991382647
[2026-02-01 20:57:19] 2026-02-01 19:57:19,420 [wrapper] cleanup supervisor_pilot 2340212 2330894
[2026-02-01 20:57:19] 2026-02-01 19:57:19,422 [wrapper] Test setup, not cleaning
[2026-02-01 20:57:19] 2026-02-01 19:57:19,425 [wrapper] apfmon messages muted
[2026-02-01 20:57:19] 2026-02-01 19:57:19,427 [wrapper] ==== wrapper stdout END ====
[2026-02-01 20:57:19] 2026-02-01 19:57:19,429 [wrapper] ==== wrapper stderr END ====
[2026-02-01 20:57:19]  *** Error codes and diagnostics ***
[2026-02-01 20:57:19]     "exeErrorCode": 0,
[2026-02-01 20:57:19]     "exeErrorDiag": "",
[2026-02-01 20:57:19]     "pilotErrorCode": 0,
[2026-02-01 20:57:19]     "pilotErrorDiag": "",
[2026-02-01 20:57:19]  *** Listing of results directory ***
[2026-02-01 20:57:19] total 664296
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc    584422 Feb  1 03:40 pilot3.tar.gz
[2026-02-01 20:57:19] -rwx------ 1 boinc boinc     36322 Feb  1 03:43 runpilot2-wrapper.sh
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc      5111 Feb  1 03:47 queuedata.json
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc       100 Feb  1 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 20:57:19] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 19:43 run_atlas
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc       105 Feb  1 19:43 job.xml
[2026-02-01 20:57:19] -rw-r--r-- 2 boinc boinc 493189454 Feb  1 19:43 EVNT.48310747._000018.pool.root.1
[2026-02-01 20:57:19] -rw-r--r-- 2 boinc boinc    597759 Feb  1 19:43 input.tar.gz
[2026-02-01 20:57:19] -rw-r--r-- 2 boinc boinc     15845 Feb  1 19:43 start_atlas.sh
[2026-02-01 20:57:19] drwxrwx--x 2 boinc boinc      4096 Feb  1 19:43 shared
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc         0 Feb  1 19:43 boinc_setup_complete
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc      6448 Feb  1 19:43 init_data.xml
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc         0 Feb  1 19:43 boinc_lockfile
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc      2519 Feb  1 19:43 pandaJob.out
[2026-02-01 20:57:19] -rw------- 1 boinc boinc   1009765 Feb  1 19:44 agis_schedconf.cvmfs.json
[2026-02-01 20:57:19] -rw------- 1 boinc boinc   1511668 Feb  1 19:44 agis_ddmendpoints.agis.ALL.json
[2026-02-01 20:57:19] -rw------- 1 boinc boinc       427 Feb  1 19:44 workernode_map.json
[2026-02-01 20:57:19] drwx------ 5 boinc boinc      4096 Feb  1 19:44 pilot3
[2026-02-01 20:57:19] -rw------- 1 boinc boinc 181329477 Feb  1 20:56 HITS.48310749._000863.pool.root.1
[2026-02-01 20:57:19] -rw------- 1 boinc boinc        95 Feb  1 20:56 pilot_heartbeat.json
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc       530 Feb  1 20:56 boinc_task_state.xml
[2026-02-01 20:57:19] -rw------- 1 boinc boinc      1016 Feb  1 20:56 memory_monitor_summary.json
[2026-02-01 20:57:19] -rw------- 1 boinc boinc    246465 Feb  1 20:56 log.48310749._000863.job.log.tgz.1
[2026-02-01 20:57:19] -rw------- 1 boinc boinc      6304 Feb  1 20:56 heartbeat.json
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc      8192 Feb  1 20:57 boinc_mmap_file
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc        27 Feb  1 20:57 wrapper_checkpoint.txt
[2026-02-01 20:57:19] -rw------- 1 boinc boinc      4820 Feb  1 20:57 pilotlog.txt
[2026-02-01 20:57:19] -rw------- 1 boinc boinc    645474 Feb  1 20:57 log.48310749._000863.job.log.1
[2026-02-01 20:57:19] -rw------- 1 boinc boinc       357 Feb  1 20:57 output.list
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc       620 Feb  1 20:57 runtime_log
[2026-02-01 20:57:19] -rw------- 1 boinc boinc    911360 Feb  1 20:57 result.tar.gz
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc      8916 Feb  1 20:57 runtime_log.err
[2026-02-01 20:57:19] -rw------- 1 boinc boinc       661 Feb  1 20:57 Fm4NDmHcc68n9Rq4apOajLDm4fhM0noT9bVooX4SDmN2OKDmm0dHMo.diag
[2026-02-01 20:57:19] -rw-r--r-- 1 boinc boinc     12834 Feb  1 20:57 stderr.txt
[2026-02-01 20:57:19] HITS file was successfully produced:
[2026-02-01 20:57:19] -rw------- 1 boinc boinc 181329477 Feb  1 20:56 shared/HITS.pool.root.1
[2026-02-01 20:57:19]  *** Contents of shared directory: ***
[2026-02-01 20:57:19] total 660212
[2026-02-01 20:57:19] -rw-r--r-- 2 boinc boinc 493189454 Feb  1 19:43 ATLAS.root_0
[2026-02-01 20:57:19] -rw-r--r-- 2 boinc boinc    597759 Feb  1 19:43 input.tar.gz
[2026-02-01 20:57:19] -rw-r--r-- 2 boinc boinc     15845 Feb  1 19:43 start_atlas.sh
[2026-02-01 20:57:19] -rw------- 1 boinc boinc 181329477 Feb  1 20:56 HITS.pool.root.1
[2026-02-01 20:57:19] -rw------- 1 boinc boinc    911360 Feb  1 20:57 result.tar.gz
20:57:20 (2326855): run_atlas exited; CPU time 12472.696298
20:57:20 (2326855): called boinc_finish(0)

</stderr_txt>
]]>

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