Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:07:03 (3302658): wrapper (7.7.26015): starting
01:07:03 (3302658): wrapper: running run_atlas (--nthreads 3)
[2026-02-02 01:07:03] Arguments: --nthreads 3
[2026-02-02 01:07:03] Threads: 3
[2026-02-02 01:07:03] Checking for CVMFS
[2026-02-02 01:07:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-02 01:07:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-02 01:07:04] Running cvmfs_config stat atlas.cern.ch
[2026-02-02 01:07:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-02 01:07:04] 2.9.2.0 2679616 4386 70284 155767 2 50 18753230 36864001 0 130560 0 1768813 99.984 153289 18983 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-02 01:07:04] CVMFS is ok
[2026-02-02 01:07:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-02 01:07:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-02 01:07:04] Further information can be found at the LHC@home message board.
[2026-02-02 01:07:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-02 01:07:04] Checking for apptainer binary...
[2026-02-02 01:07:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-02 01:07:04] Running /usr/bin/apptainer --version
[2026-02-02 01:07:04] apptainer version 1.4.1-1.1
[2026-02-02 01:07:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-02 01:07:04] magicA244b
[2026-02-02 01:07:04] apptainer works
[2026-02-02 01:07:04] Set ATHENA_PROC_NUMBER=3
[2026-02-02 01:07:04] Set ATHENA_CORE_NUMBER=3
[2026-02-02 01:07:04] Starting ATLAS job with PandaID=6995619208
[2026-02-02 01:07:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-02 03:08:34]  *** The last 200 lines of the pilot log: ***
[2026-02-02 03:08:34] 2026-02-02 02:07:59,834 | WARNING  | found no corresponding commands to process id(s)
[2026-02-02 03:08:34] 2026-02-02 02:07:59,834 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-02 03:08:34] 2026-02-02 02:07:59,835 | INFO     | did not find any defunct processes belonging to 3311125
[2026-02-02 03:08:34] 2026-02-02 02:07:59,836 | INFO     | did not find any defunct processes belonging to 3311125
[2026-02-02 03:08:34] 2026-02-02 02:07:59,836 | INFO     | ready for new job
[2026-02-02 03:08:34] 2026-02-02 02:07:59,836 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-02 03:08:34] 2026-02-02 02:07:59,837 | INFO     | **************************************
[2026-02-02 03:08:34] 2026-02-02 02:07:59,837 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-02 03:08:34] 2026-02-02 02:07:59,837 | INFO     | **************************************
[2026-02-02 03:08:34] 2026-02-02 02:07:59,837 | INFO     | 
[2026-02-02 03:08:34] 2026-02-02 02:07:59,837 | INFO     | architecture information:
[2026-02-02 03:08:34] 2026-02-02 02:07:59,837 | INFO     | executing command: cat /etc/os-release
[2026-02-02 03:08:34] 2026-02-02 02:07:59,847 | INFO     | cat /etc/os-release:
[2026-02-02 03:08:34] NAME="CentOS Linux"
[2026-02-02 03:08:34] VERSION="7 (Core)"
[2026-02-02 03:08:34] ID="centos"
[2026-02-02 03:08:34] ID_LIKE="rhel fedora"
[2026-02-02 03:08:34] VERSION_ID="7"
[2026-02-02 03:08:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-02 03:08:34] ANSI_COLOR="0;31"
[2026-02-02 03:08:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-02 03:08:34] HOME_URL="https://www.centos.org/"
[2026-02-02 03:08:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-02 03:08:34] 
[2026-02-02 03:08:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-02 03:08:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-02 03:08:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-02 03:08:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-02 03:08:34] 
[2026-02-02 03:08:34] 2026-02-02 02:07:59,847 | INFO     | **************************************
[2026-02-02 03:08:34] 2026-02-02 02:08:00,351 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 03:08:34] 2026-02-02 02:08:00,363 | INFO     | sufficient remaining disk space (338190925824 B)
[2026-02-02 03:08:34] 2026-02-02 02:08:00,363 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-02 03:08:34] 2026-02-02 02:08:00,363 | INFO     | current server update state: UPDATING_FINAL
[2026-02-02 03:08:34] 2026-02-02 02:08:00,363 | INFO     | update_server=False
[2026-02-02 03:08:34] 2026-02-02 02:08:00,364 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-02 03:08:34] 2026-02-02 02:08:00,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-02 03:08:34] 2026-02-02 02:08:00,364 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-02 03:08:34] 2026-02-02 02:08:00,456 | INFO     | all payload control threads have been joined
[2026-02-02 03:08:34] 2026-02-02 02:08:01,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-02 03:08:34] 2026-02-02 02:08:01,189 | INFO     | all data control threads have been joined
[2026-02-02 03:08:34] 2026-02-02 02:08:01,369 | INFO     | [job] queue monitor thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:01,370 | INFO     | [job] retrieve thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:01,462 | INFO     | [payload] control thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:01,626 | WARNING  | process 3311125 can no longer be monitored (due to stat problems) - aborting
[2026-02-02 03:08:34] 2026-02-02 02:08:01,652 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 03:08:34] 2026-02-02 02:08:01,652 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-02 03:08:34] 2026-02-02 02:08:01,652 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-02 03:08:34] 2026-02-02 02:08:01,652 | WARNING  | maxPSS not found in memory monitor output
[2026-02-02 03:08:34] 2026-02-02 02:08:01,652 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-6995619208/payload.stdout) since it has not been created yet
[2026-02-02 03:08:34] 2026-02-02 02:08:01,652 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-02 03:08:34] 2026-02-02 02:08:01,662 | INFO     | sufficient remaining disk space (338190925824 B)
[2026-02-02 03:08:34] 2026-02-02 02:08:01,663 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-02 03:08:34] 2026-02-02 02:08:01,663 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6995619208/HITS.48431080._004635.pool.root.1 since it does not exist
[2026-02-02 03:08:34] 2026-02-02 02:08:01,696 | INFO     | number of running child processes to parent process 3311125: 1
[2026-02-02 03:08:34] 2026-02-02 02:08:01,696 | INFO     | maximum number of monitored processes: 6
[2026-02-02 03:08:34] 2026-02-02 02:08:01,696 | INFO     | aborting job monitoring since job object (job id=6995619208) has expired
[2026-02-02 03:08:34] 2026-02-02 02:08:01,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-02 03:08:34] 2026-02-02 02:08:01,696 | INFO     | will abort loop
[2026-02-02 03:08:34] 2026-02-02 02:08:01,771 | INFO     | all job control threads have been joined
[2026-02-02 03:08:34] 2026-02-02 02:08:01,793 | INFO     | [payload] execute_payloads thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,022 | INFO     | [payload] validate_post thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,095 | INFO     | [job] create_data_payload thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,195 | INFO     | [data] control thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,368 | INFO     | [data] copytool_in thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,534 | INFO     | [payload] validate_pre thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,577 | INFO     | [job] validate thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,606 | INFO     | [payload] failed_post thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,702 | INFO     | [job] job monitor thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:02,777 | INFO     | [job] control thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:03,161 | INFO     | [data] copytool_out thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:04,371 | INFO     | [data] queue_monitor thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:10,830 | INFO     | job.realtimelogging is not enabled
[2026-02-02 03:08:34] 2026-02-02 02:08:11,836 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-02 03:08:34] 2026-02-02 02:08:28,224 | INFO     | [monitor] cgroup control has ended
[2026-02-02 03:08:34] 2026-02-02 02:08:29,213 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784342976320)>', '<ExcThread(monitor, started 139783837824768)>']
[2026-02-02 03:08:34] 2026-02-02 02:08:31,373 | INFO     | PID=3306705 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-02 03:08:34] 2026-02-02 02:08:31,373 | INFO     | found 0 job(s) in 20 queues
[2026-02-02 03:08:34] 2026-02-02 02:08:31,373 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-02 03:08:34] 2026-02-02 02:08:31,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-02 03:08:34] 2026-02-02 02:08:31,373 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-02 03:08:34] 2026-02-02 02:08:31,373 | INFO     | [monitor] control thread has ended
[2026-02-02 03:08:34] 2026-02-02 02:08:34,239 | INFO     | all workflow threads have been joined
[2026-02-02 03:08:34] 2026-02-02 02:08:34,239 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-02 03:08:34] 2026-02-02 02:08:34,239 | INFO     | traces error code: 0
[2026-02-02 03:08:34] 2026-02-02 02:08:34,240 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-02 03:08:34] 2026-02-02 02:08:34,286 [wrapper] ==== pilot stdout END ====
[2026-02-02 03:08:34] 2026-02-02 02:08:34,289 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-02 03:08:34] 2026-02-02 02:08:34,291 [wrapper] pilotpid: 3306705
[2026-02-02 03:08:34] 2026-02-02 02:08:34,294 [wrapper] Pilot exit status: 0
[2026-02-02 03:08:34] 2026-02-02 02:08:34,301 [wrapper] pandaids: 6995619208
[2026-02-02 03:08:34] 2026-02-02 02:08:34,317 [wrapper] cleanup supervisor_pilot 3317180 3306706
[2026-02-02 03:08:34] 2026-02-02 02:08:34,320 [wrapper] Test setup, not cleaning
[2026-02-02 03:08:34] 2026-02-02 02:08:34,323 [wrapper] apfmon messages muted
[2026-02-02 03:08:34] 2026-02-02 02:08:34,325 [wrapper] ==== wrapper stdout END ====
[2026-02-02 03:08:34] 2026-02-02 02:08:34,328 [wrapper] ==== wrapper stderr END ====
[2026-02-02 03:08:34]  *** Error codes and diagnostics ***
[2026-02-02 03:08:34]     "exeErrorCode": 0,
[2026-02-02 03:08:34]     "exeErrorDiag": "",
[2026-02-02 03:08:34]     "pilotErrorCode": 0,
[2026-02-02 03:08:34]     "pilotErrorDiag": "",
[2026-02-02 03:08:34]  *** Listing of results directory ***
[2026-02-02 03:08:34] total 892808
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc    584422 Feb  1 06:24 pilot3.tar.gz
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc      5111 Feb  1 06:35 queuedata.json
[2026-02-02 03:08:34] -rwx------ 1 boinc boinc     36322 Feb  1 06:35 runpilot2-wrapper.sh
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc       100 Feb  2 01:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-02 03:08:34] -rwxr-xr-x 1 boinc boinc      7986 Feb  2 01:07 run_atlas
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc       105 Feb  2 01:07 job.xml
[2026-02-02 03:08:34] -rw-r--r-- 2 boinc boinc 654597017 Feb  2 01:07 EVNT.48431078._000090.pool.root.1
[2026-02-02 03:08:34] -rw-r--r-- 2 boinc boinc    597773 Feb  2 01:07 input.tar.gz
[2026-02-02 03:08:34] -rw-r--r-- 2 boinc boinc     15845 Feb  2 01:07 start_atlas.sh
[2026-02-02 03:08:34] drwxrwx--x 2 boinc boinc      4096 Feb  2 01:07 shared
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc         0 Feb  2 01:07 boinc_setup_complete
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc      6199 Feb  2 01:07 init_data.xml
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc         0 Feb  2 01:07 boinc_lockfile
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc      2557 Feb  2 01:07 pandaJob.out
[2026-02-02 03:08:34] -rw------- 1 boinc boinc   1009765 Feb  2 01:07 agis_schedconf.cvmfs.json
[2026-02-02 03:08:34] -rw------- 1 boinc boinc   1511668 Feb  2 01:07 agis_ddmendpoints.agis.ALL.json
[2026-02-02 03:08:34] -rw------- 1 boinc boinc       423 Feb  2 01:07 workernode_map.json
[2026-02-02 03:08:34] drwx------ 5 boinc boinc      4096 Feb  2 01:07 pilot3
[2026-02-02 03:08:34] -rw------- 1 boinc boinc 253046215 Feb  2 03:07 HITS.48431080._004635.pool.root.1
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc       530 Feb  2 03:07 boinc_task_state.xml
[2026-02-02 03:08:34] -rw------- 1 boinc boinc        95 Feb  2 03:07 pilot_heartbeat.json
[2026-02-02 03:08:34] -rw------- 1 boinc boinc      1020 Feb  2 03:07 memory_monitor_summary.json
[2026-02-02 03:08:34] -rw------- 1 boinc boinc    293751 Feb  2 03:07 log.48431080._004635.job.log.tgz.1
[2026-02-02 03:08:34] -rw------- 1 boinc boinc      6310 Feb  2 03:07 heartbeat.json
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc      8192 Feb  2 03:08 boinc_mmap_file
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc        27 Feb  2 03:08 wrapper_checkpoint.txt
[2026-02-02 03:08:34] -rw------- 1 boinc boinc      6321 Feb  2 03:08 pilotlog.txt
[2026-02-02 03:08:34] -rw------- 1 boinc boinc   1040243 Feb  2 03:08 log.48431080._004635.job.log.1
[2026-02-02 03:08:34] -rw------- 1 boinc boinc       357 Feb  2 03:08 output.list
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc       620 Feb  2 03:08 runtime_log
[2026-02-02 03:08:34] -rw------- 1 boinc boinc   1351680 Feb  2 03:08 result.tar.gz
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc      8916 Feb  2 03:08 runtime_log.err
[2026-02-02 03:08:34] -rw------- 1 boinc boinc       661 Feb  2 03:08 oP1KDmxIf68n9Rq4apOajLDm4fhM0noT9bVooX4SDmjKPKDmPQ9lIn.diag
[2026-02-02 03:08:34] -rw-r--r-- 1 boinc boinc     11852 Feb  2 03:08 stderr.txt
[2026-02-02 03:08:34] HITS file was successfully produced:
[2026-02-02 03:08:34] -rw------- 1 boinc boinc 253046215 Feb  2 03:07 shared/HITS.pool.root.1
[2026-02-02 03:08:34]  *** Contents of shared directory: ***
[2026-02-02 03:08:34] total 888300
[2026-02-02 03:08:34] -rw-r--r-- 2 boinc boinc 654597017 Feb  2 01:07 ATLAS.root_0
[2026-02-02 03:08:34] -rw-r--r-- 2 boinc boinc    597773 Feb  2 01:07 input.tar.gz
[2026-02-02 03:08:34] -rw-r--r-- 2 boinc boinc     15845 Feb  2 01:07 start_atlas.sh
[2026-02-02 03:08:34] -rw------- 1 boinc boinc 253046215 Feb  2 03:07 HITS.pool.root.1
[2026-02-02 03:08:34] -rw------- 1 boinc boinc   1351680 Feb  2 03:08 result.tar.gz
03:08:35 (3302658): run_atlas exited; CPU time 20916.746098
03:08:35 (3302658): called boinc_finish(0)

</stderr_txt>
]]>

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