Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:06:18 (1264625): wrapper (7.7.26015): starting
17:06:18 (1264625): wrapper: running run_atlas (--nthreads 2)
[2026-02-01 17:06:18] Arguments: --nthreads 2
[2026-02-01 17:06:18] Threads: 2
[2026-02-01 17:06:18] Checking for CVMFS
[2026-02-01 17:06:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 17:06:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 17:06:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 17:06:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 17:06:19] 2.9.2.0 671571 5907 62948 155755 2 50 22149445 36864000 0 130560 0 1754313 99.981 181710 18498 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 17:06:19] CVMFS is ok
[2026-02-01 17:06:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 17:06:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 17:06:19] Further information can be found at the LHC@home message board.
[2026-02-01 17:06:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 17:06:19] Checking for apptainer binary...
[2026-02-01 17:06:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 17:06:19] Running /usr/bin/apptainer --version
[2026-02-01 17:06:19] apptainer version 1.4.1-1.1
[2026-02-01 17:06:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 17:06:19] madmaxA275
[2026-02-01 17:06:19] apptainer works
[2026-02-01 17:06:19] Set ATHENA_PROC_NUMBER=2
[2026-02-01 17:06:19] Set ATHENA_CORE_NUMBER=2
[2026-02-01 17:06:19] Starting ATLAS job with PandaID=6994938050
[2026-02-01 17:06:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 19:24:59]  *** The last 200 lines of the pilot log: ***
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 19:24:59] 2026-02-01 18:23:59,805 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 19:24:59] 2026-02-01 18:23:59,806 | INFO     | job 6994938050 has completed (purged errors)
[2026-02-01 19:24:59] 2026-02-01 18:23:59,806 | INFO     | overall cleanup function is called
[2026-02-01 19:24:59] 2026-02-01 18:24:00,812 | INFO     | --- collectZombieJob: --- 10, [1273054]
[2026-02-01 19:24:59] 2026-02-01 18:24:00,812 | INFO     | zombie collector waiting for pid 1273054
[2026-02-01 19:24:59] 2026-02-01 18:24:00,812 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 19:24:59] 2026-02-01 18:24:00,812 | INFO     | collected zombie processes
[2026-02-01 19:24:59] 2026-02-01 18:24:00,812 | INFO     | will attempt to kill all subprocesses of pid=1273054
[2026-02-01 19:24:59] 2026-02-01 18:24:00,842 | INFO     | process IDs to be killed: [1273054] (in reverse order)
[2026-02-01 19:24:59] 2026-02-01 18:24:00,861 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 19:24:59] 2026-02-01 18:24:00,861 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 19:24:59] 2026-02-01 18:24:00,862 | INFO     | did not find any defunct processes belonging to 1273054
[2026-02-01 19:24:59] 2026-02-01 18:24:00,862 | INFO     | did not find any defunct processes belonging to 1273054
[2026-02-01 19:24:59] 2026-02-01 18:24:00,862 | INFO     | ready for new job
[2026-02-01 19:24:59] 2026-02-01 18:24:00,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 19:24:59] 2026-02-01 18:24:00,863 | INFO     | **************************************
[2026-02-01 19:24:59] 2026-02-01 18:24:00,863 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 19:24:59] 2026-02-01 18:24:00,863 | INFO     | **************************************
[2026-02-01 19:24:59] 2026-02-01 18:24:00,863 | INFO     | 
[2026-02-01 19:24:59] 2026-02-01 18:24:00,863 | INFO     | architecture information:
[2026-02-01 19:24:59] 2026-02-01 18:24:00,863 | INFO     | executing command: cat /etc/os-release
[2026-02-01 19:24:59] 2026-02-01 18:24:00,871 | INFO     | cat /etc/os-release:
[2026-02-01 19:24:59] NAME="CentOS Linux"
[2026-02-01 19:24:59] VERSION="7 (Core)"
[2026-02-01 19:24:59] ID="centos"
[2026-02-01 19:24:59] ID_LIKE="rhel fedora"
[2026-02-01 19:24:59] VERSION_ID="7"
[2026-02-01 19:24:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 19:24:59] ANSI_COLOR="0;31"
[2026-02-01 19:24:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 19:24:59] HOME_URL="https://www.centos.org/"
[2026-02-01 19:24:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 19:24:59] 
[2026-02-01 19:24:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 19:24:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 19:24:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 19:24:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 19:24:59] 
[2026-02-01 19:24:59] 2026-02-01 18:24:00,872 | INFO     | **************************************
[2026-02-01 19:24:59] 2026-02-01 18:24:01,375 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | INFO     | sufficient remaining disk space (260241883136 B)
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | INFO     | update_server=False
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 19:24:59] 2026-02-01 18:24:01,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 19:24:59] 2026-02-01 18:24:01,484 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 19:24:59] 2026-02-01 18:24:01,484 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 19:24:59] 2026-02-01 18:24:01,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 19:24:59] 2026-02-01 18:24:01,485 | INFO     | will abort loop
[2026-02-01 19:24:59] 2026-02-01 18:24:01,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 19:24:59] 2026-02-01 18:24:02,310 | INFO     | all data control threads have been joined
[2026-02-01 19:24:59] 2026-02-01 18:24:02,325 | INFO     | all job control threads have been joined
[2026-02-01 19:24:59] 2026-02-01 18:24:02,391 | INFO     | [job] retrieve thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:02,391 | INFO     | [job] queue monitor thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:02,409 | INFO     | all payload control threads have been joined
[2026-02-01 19:24:59] 2026-02-01 18:24:02,414 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:02,491 | INFO     | [job] job monitor thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:02,586 | INFO     | [data] copytool_in thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,316 | INFO     | [data] control thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,331 | INFO     | [job] control thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,378 | INFO     | [payload] failed_post thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,415 | INFO     | [payload] control thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,462 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,554 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,579 | INFO     | [job] validate thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,737 | INFO     | [data] copytool_out thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,840 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:03,993 | INFO     | [payload] validate_post thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:05,393 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 19:24:59] 2026-02-01 18:24:31,062 | INFO     | PID=1268648 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 19:24:59] 2026-02-01 18:24:31,062 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 19:24:59] 2026-02-01 18:24:31,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 19:24:59] 2026-02-01 18:24:31,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 19:24:59] 2026-02-01 18:24:52,558 | INFO     | [monitor] cgroup control has ended
[2026-02-01 19:24:59] 2026-02-01 18:24:54,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139649036429120)>', '<ExcThread(monitor, started 139648235988736)>']
[2026-02-01 19:24:59] 2026-02-01 18:24:55,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 19:24:59] 2026-02-01 18:24:55,180 | INFO     | [monitor] control thread has ended
[2026-02-01 19:24:59] 2026-02-01 18:24:59,369 | INFO     | all workflow threads have been joined
[2026-02-01 19:24:59] 2026-02-01 18:24:59,370 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 19:24:59] 2026-02-01 18:24:59,370 | INFO     | traces error code: 0
[2026-02-01 19:24:59] 2026-02-01 18:24:59,370 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 19:24:59] 2026-02-01 18:24:59,413 [wrapper] ==== pilot stdout END ====
[2026-02-01 19:24:59] 2026-02-01 18:24:59,416 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 19:24:59] 2026-02-01 18:24:59,418 [wrapper] pilotpid: 1268648
[2026-02-01 19:24:59] 2026-02-01 18:24:59,420 [wrapper] Pilot exit status: 0
[2026-02-01 19:24:59] 2026-02-01 18:24:59,426 [wrapper] pandaids: 6994938050
[2026-02-01 19:24:59] 2026-02-01 18:24:59,440 [wrapper] cleanup supervisor_pilot 1278266 1268649
[2026-02-01 19:24:59] 2026-02-01 18:24:59,442 [wrapper] Test setup, not cleaning
[2026-02-01 19:24:59] 2026-02-01 18:24:59,444 [wrapper] apfmon messages muted
[2026-02-01 19:24:59] 2026-02-01 18:24:59,446 [wrapper] ==== wrapper stdout END ====
[2026-02-01 19:24:59] 2026-02-01 18:24:59,448 [wrapper] ==== wrapper stderr END ====
[2026-02-01 19:24:59]  *** Error codes and diagnostics ***
[2026-02-01 19:24:59]     "exeErrorCode": 0,
[2026-02-01 19:24:59]     "exeErrorDiag": "",
[2026-02-01 19:24:59]     "pilotErrorCode": 0,
[2026-02-01 19:24:59]     "pilotErrorDiag": "",
[2026-02-01 19:24:59]  *** Listing of results directory ***
[2026-02-01 19:24:59] total 672424
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc      5111 Jan 31 22:17 queuedata.json
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc    584422 Jan 31 22:17 pilot3.tar.gz
[2026-02-01 19:24:59] -rwx------ 1 boinc boinc     36322 Jan 31 22:17 runpilot2-wrapper.sh
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc       100 Feb  1 17:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 19:24:59] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 17:06 run_atlas
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc       105 Feb  1 17:06 job.xml
[2026-02-01 19:24:59] -rw-r--r-- 2 boinc boinc 493763330 Feb  1 17:06 EVNT.48317889._000093.pool.root.1
[2026-02-01 19:24:59] -rw-r--r-- 2 boinc boinc    597757 Feb  1 17:06 input.tar.gz
[2026-02-01 19:24:59] -rw-r--r-- 2 boinc boinc     15845 Feb  1 17:06 start_atlas.sh
[2026-02-01 19:24:59] drwxrwx--x 2 boinc boinc      4096 Feb  1 17:06 shared
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc         0 Feb  1 17:06 boinc_setup_complete
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc      6208 Feb  1 17:06 init_data.xml
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc         0 Feb  1 17:06 boinc_lockfile
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc      2521 Feb  1 17:06 pandaJob.out
[2026-02-01 19:24:59] -rw------- 1 boinc boinc   1010520 Feb  1 17:06 agis_schedconf.cvmfs.json
[2026-02-01 19:24:59] -rw------- 1 boinc boinc   1511668 Feb  1 17:06 agis_ddmendpoints.agis.ALL.json
[2026-02-01 19:24:59] -rw------- 1 boinc boinc       421 Feb  1 17:06 workernode_map.json
[2026-02-01 19:24:59] drwx------ 5 boinc boinc      4096 Feb  1 17:06 pilot3
[2026-02-01 19:24:59] -rw------- 1 boinc boinc 187891758 Feb  1 19:23 HITS.48317892._004799.pool.root.1
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc       530 Feb  1 19:23 boinc_task_state.xml
[2026-02-01 19:24:59] -rw------- 1 boinc boinc      1012 Feb  1 19:23 memory_monitor_summary.json
[2026-02-01 19:24:59] -rw------- 1 boinc boinc    307462 Feb  1 19:23 log.48317892._004799.job.log.tgz.1
[2026-02-01 19:24:59] -rw------- 1 boinc boinc      6299 Feb  1 19:23 heartbeat.json
[2026-02-01 19:24:59] -rw------- 1 boinc boinc        95 Feb  1 19:24 pilot_heartbeat.json
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc      8192 Feb  1 19:24 boinc_mmap_file
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc        27 Feb  1 19:24 wrapper_checkpoint.txt
[2026-02-01 19:24:59] -rw------- 1 boinc boinc      4934 Feb  1 19:24 pilotlog.txt
[2026-02-01 19:24:59] -rw------- 1 boinc boinc   1178853 Feb  1 19:24 log.48317892._004799.job.log.1
[2026-02-01 19:24:59] -rw------- 1 boinc boinc       357 Feb  1 19:24 output.list
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc       620 Feb  1 19:24 runtime_log
[2026-02-01 19:24:59] -rw------- 1 boinc boinc   1505280 Feb  1 19:24 result.tar.gz
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc      8916 Feb  1 19:24 runtime_log.err
[2026-02-01 19:24:59] -rw------- 1 boinc boinc       661 Feb  1 19:24 KdMMDmRWX68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYdOKDmIfgK2n.diag
[2026-02-01 19:24:59] -rw-r--r-- 1 boinc boinc     11751 Feb  1 19:24 stderr.txt
[2026-02-01 19:24:59] HITS file was successfully produced:
[2026-02-01 19:24:59] -rw------- 1 boinc boinc 187891758 Feb  1 19:23 shared/HITS.pool.root.1
[2026-02-01 19:24:59]  *** Contents of shared directory: ***
[2026-02-01 19:24:59] total 667764
[2026-02-01 19:24:59] -rw-r--r-- 2 boinc boinc 493763330 Feb  1 17:06 ATLAS.root_0
[2026-02-01 19:24:59] -rw-r--r-- 2 boinc boinc    597757 Feb  1 17:06 input.tar.gz
[2026-02-01 19:24:59] -rw-r--r-- 2 boinc boinc     15845 Feb  1 17:06 start_atlas.sh
[2026-02-01 19:24:59] -rw------- 1 boinc boinc 187891758 Feb  1 19:23 HITS.pool.root.1
[2026-02-01 19:24:59] -rw------- 1 boinc boinc   1505280 Feb  1 19:24 result.tar.gz
19:25:00 (1264625): run_atlas exited; CPU time 16102.465256
19:25:00 (1264625): called boinc_finish(0)

</stderr_txt>
]]>

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