Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:48:18 (3435): wrapper (7.7.26015): starting
00:48:18 (3435): wrapper: running run_atlas (--nthreads 8)
[2026-02-01 00:48:18] Arguments: --nthreads 8
[2026-02-01 00:48:18] Threads: 8
[2026-02-01 00:48:18] Checking for CVMFS
[2026-02-01 00:48:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 00:48:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 00:48:18] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 00:48:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 00:48:19] 2.11.2.0 2913 143500 130320 155740 1 51 20218773 20275201 1 130560 0 32323471 99.756 10999012 30391 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-01 00:48:19] CVMFS is ok
[2026-02-01 00:48:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 00:48:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 00:48:19] Further information can be found at the LHC@home message board.
[2026-02-01 00:48:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 00:48:19] Checking for apptainer binary...
[2026-02-01 00:48:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 00:48:19] Running /usr/bin/apptainer --version
[2026-02-01 00:48:19] apptainer version 1.3.2-1.el7
[2026-02-01 00:48:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 00:48:20] c-204-29.aglt2.org
[2026-02-01 00:48:20] apptainer works
[2026-02-01 00:48:21] Set ATHENA_PROC_NUMBER=8
[2026-02-01 00:48:21] Set ATHENA_CORE_NUMBER=8
[2026-02-01 00:48:21] Starting ATLAS job with PandaID=6995181793
[2026-02-01 00:48:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 03:41:20]  *** The last 200 lines of the pilot log: ***
[2026-02-01 03:41:20] 2026-02-01 08:40:48,149 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-6995181793/jobReport.json
[2026-02-01 03:41:20] 2026-02-01 08:40:48,153 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-02-01 03:41:20] 2026-02-01 08:40:48,154 | INFO     | this job has now completed (state=finished)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,154 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,154 | INFO     | log transfer has been attempted: DONE
[2026-02-01 03:41:20] 2026-02-01 08:40:48,154 | INFO     | job 6995181793 has finished - writing final server update
[2026-02-01 03:41:20] 2026-02-01 08:40:48,155 | INFO     | total number of processed events: 400 (read)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,157 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6995181793/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,157 | INFO     | extracted standard info from prmon json
[2026-02-01 03:41:20] 2026-02-01 08:40:48,158 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 03:41:20] 2026-02-01 08:40:48,158 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 03:41:20] 2026-02-01 08:40:48,158 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 03:41:20] 2026-02-01 08:40:48,158 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 03:41:20] 2026-02-01 08:40:48,162 | INFO     | fitting pss+swap vs Time
[2026-02-01 03:41:20] 2026-02-01 08:40:48,162 | INFO     | sum of square deviations: 1496660620.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,163 | INFO     | sum of deviations: 9465863612.000002
[2026-02-01 03:41:20] 2026-02-01 08:40:48,163 | INFO     | mean x: 1769930075.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,163 | INFO     | mean y: 2575388.5443786983
[2026-02-01 03:41:20] 2026-02-01 08:40:48,163 | INFO     | intersect: -11191623529.261673
[2026-02-01 03:41:20] 2026-02-01 08:40:48,164 | INFO     | chi2: 1.5418488381650906
[2026-02-01 03:41:20] 2026-02-01 08:40:48,164 | INFO     | sum of square deviations: 1367709365.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,165 | INFO     | sum of deviations: 9144236842.000002
[2026-02-01 03:41:20] 2026-02-01 08:40:48,166 | INFO     | mean x: 1769929922.5
[2026-02-01 03:41:20] 2026-02-01 08:40:48,166 | INFO     | mean y: 2575008.073170732
[2026-02-01 03:41:20] 2026-02-01 08:40:48,166 | INFO     | intersect: -11830829675.15257
[2026-02-01 03:41:20] 2026-02-01 08:40:48,166 | INFO     | chi2: 1.5429170002935453
[2026-02-01 03:41:20] 2026-02-01 08:40:48,166 | INFO     | current chi2=1.5429170002935453 (change=-0.06927800585989474 %)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,166 | INFO     | right removable region: 163
[2026-02-01 03:41:20] 2026-02-01 08:40:48,167 | INFO     | sum of square deviations: 1367709365.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,167 | INFO     | sum of deviations: -16386014376.500002
[2026-02-01 03:41:20] 2026-02-01 08:40:48,168 | INFO     | mean x: 1769930227.5
[2026-02-01 03:41:20] 2026-02-01 08:40:48,168 | INFO     | mean y: 2605548.4207317075
[2026-02-01 03:41:20] 2026-02-01 08:40:48,168 | INFO     | intersect: 21207477647.265297
[2026-02-01 03:41:20] 2026-02-01 08:40:48,168 | INFO     | chi2: 0.1243738632894926
[2026-02-01 03:41:20] 2026-02-01 08:40:48,168 | INFO     | current chi2=0.1243738632894926 (change=91.93345935017169 %)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,169 | INFO     | sum of square deviations: 1246386160.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,169 | INFO     | sum of deviations: -14029092991.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,169 | INFO     | mean x: 1769930380.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,170 | INFO     | mean y: 2602527.2264150945
[2026-02-01 03:41:20] 2026-02-01 08:40:48,170 | INFO     | intersect: 19924612804.214703
[2026-02-01 03:41:20] 2026-02-01 08:40:48,170 | INFO     | chi2: 0.11114617563165458
[2026-02-01 03:41:20] 2026-02-01 08:40:48,170 | INFO     | current chi2=0.11114617563165458 (change=10.635423961262068 %)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,170 | INFO     | left removable region: 20
[2026-02-01 03:41:20] 2026-02-01 08:40:48,171 | INFO     | sum of square deviations: 906703512.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,171 | INFO     | sum of deviations: -3208826980.9999995
[2026-02-01 03:41:20] 2026-02-01 08:40:48,171 | INFO     | mean x: 1769930502.0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,172 | INFO     | mean y: 2587482.3006993006
[2026-02-01 03:41:20] 2026-02-01 08:40:48,172 | INFO     | intersect: 6266377877.007445
[2026-02-01 03:41:20] 2026-02-01 08:40:48,172 | INFO     | chi2: 0.0567719860523429
[2026-02-01 03:41:20] 2026-02-01 08:40:48,172 | INFO     | current memory leak: -3.54 B/s (using 143 data points, chi2=0.06)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,172 | INFO     | could have reported an average CPU frequency of 1679 MHz (9 samples)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | ..............................
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . Timing measurements:
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . get job = 0 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . initial setup = 8 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . payload setup = 8 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . stage-in = 0 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . payload execution = 10296 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,173 | INFO     | . stage-out = 1 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,174 | INFO     | . log creation = 0 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,174 | INFO     | ..............................
[2026-02-01 03:41:20] 2026-02-01 08:40:48,642 | INFO     | 
[2026-02-01 03:41:20] 2026-02-01 08:40:48,642 | INFO     | job summary report
[2026-02-01 03:41:20] 2026-02-01 08:40:48,643 | INFO     | --------------------------------------------------
[2026-02-01 03:41:20] 2026-02-01 08:40:48,643 | INFO     | PanDA job id: 6995181793
[2026-02-01 03:41:20] 2026-02-01 08:40:48,643 | INFO     | task id: 48431080
[2026-02-01 03:41:20] 2026-02-01 08:40:48,643 | INFO     | errors: (none)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,643 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 03:41:20] 2026-02-01 08:40:48,643 | INFO     | pilot state: finished 
[2026-02-01 03:41:20] 2026-02-01 08:40:48,644 | INFO     | transexitcode: 0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,644 | INFO     | exeerrorcode: 0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,644 | INFO     | exeerrordiag: 
[2026-02-01 03:41:20] 2026-02-01 08:40:48,644 | INFO     | exitcode: 0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,644 | INFO     | exitmsg: OK
[2026-02-01 03:41:20] 2026-02-01 08:40:48,644 | INFO     | cpuconsumptiontime: 76968 s
[2026-02-01 03:41:20] 2026-02-01 08:40:48,645 | INFO     | nevents: 400
[2026-02-01 03:41:20] 2026-02-01 08:40:48,645 | INFO     | neventsw: 0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,645 | INFO     | pid: 11689
[2026-02-01 03:41:20] 2026-02-01 08:40:48,645 | INFO     | pgrp: 11689
[2026-02-01 03:41:20] 2026-02-01 08:40:48,645 | INFO     | corecount: 8
[2026-02-01 03:41:20] 2026-02-01 08:40:48,645 | INFO     | event service: False
[2026-02-01 03:41:20] 2026-02-01 08:40:48,646 | INFO     | sizes: {0: 2277832, 1: 2278293, 11: 2278293, 10309: 2306967, 10310: 2315965, 10311: 2316021, 10312: 2316407}
[2026-02-01 03:41:20] 2026-02-01 08:40:48,646 | INFO     | --------------------------------------------------
[2026-02-01 03:41:20] 2026-02-01 08:40:48,646 | INFO     | 
[2026-02-01 03:41:20] 2026-02-01 08:40:48,646 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-01 03:41:20] 2026-02-01 08:40:48,674 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,674 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,675 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,675 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,677 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,677 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,678 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 03:41:20] 2026-02-01 08:40:48,678 | INFO     | job 6995181793 has completed (purged errors)
[2026-02-01 03:41:20] 2026-02-01 08:40:48,678 | INFO     | overall cleanup function is called
[2026-02-01 03:41:20] 2026-02-01 08:40:49,081 | WARNING  | process 11689 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 03:41:20] 2026-02-01 08:40:49,154 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 03:41:20] 2026-02-01 08:40:49,239 | INFO     | number of running child processes to parent process 11689: 1
[2026-02-01 03:41:20] 2026-02-01 08:40:49,239 | INFO     | maximum number of monitored processes: 6
[2026-02-01 03:41:20] 2026-02-01 08:40:49,239 | INFO     | aborting job monitoring since job object (job id=6995181793) has expired
[2026-02-01 03:41:20] 2026-02-01 08:40:49,686 | INFO     | --- collectZombieJob: --- 10, [11689]
[2026-02-01 03:41:20] 2026-02-01 08:40:49,686 | INFO     | zombie collector waiting for pid 11689
[2026-02-01 03:41:20] 2026-02-01 08:40:49,687 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 03:41:20] 2026-02-01 08:40:49,687 | INFO     | collected zombie processes
[2026-02-01 03:41:20] 2026-02-01 08:40:49,687 | INFO     | will attempt to kill all subprocesses of pid=11689
[2026-02-01 03:41:20] 2026-02-01 08:40:49,777 | INFO     | process IDs to be killed: [11689] (in reverse order)
[2026-02-01 03:41:20] 2026-02-01 08:40:49,840 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 03:41:20] 2026-02-01 08:40:49,840 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 03:41:20] 2026-02-01 08:40:49,845 | INFO     | did not find any defunct processes belonging to 11689
[2026-02-01 03:41:20] 2026-02-01 08:40:49,848 | INFO     | did not find any defunct processes belonging to 11689
[2026-02-01 03:41:20] 2026-02-01 08:40:49,848 | INFO     | ready for new job
[2026-02-01 03:41:20] 2026-02-01 08:40:49,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 03:41:20] 2026-02-01 08:40:49,851 | INFO     | **************************************
[2026-02-01 03:41:20] 2026-02-01 08:40:49,851 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 03:41:20] 2026-02-01 08:40:49,851 | INFO     | **************************************
[2026-02-01 03:41:20] 2026-02-01 08:40:49,851 | INFO     | 
[2026-02-01 03:41:20] 2026-02-01 08:40:49,852 | INFO     | architecture information:
[2026-02-01 03:41:20] 2026-02-01 08:40:49,852 | INFO     | executing command: cat /etc/os-release
[2026-02-01 03:41:20] 2026-02-01 08:40:49,871 | INFO     | cat /etc/os-release:
[2026-02-01 03:41:20] NAME="CentOS Linux"
[2026-02-01 03:41:20] VERSION="7 (Core)"
[2026-02-01 03:41:20] ID="centos"
[2026-02-01 03:41:20] ID_LIKE="rhel fedora"
[2026-02-01 03:41:20] VERSION_ID="7"
[2026-02-01 03:41:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 03:41:20] ANSI_COLOR="0;31"
[2026-02-01 03:41:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 03:41:20] HOME_URL="https://www.centos.org/"
[2026-02-01 03:41:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 03:41:20] 
[2026-02-01 03:41:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 03:41:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 03:41:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 03:41:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 03:41:20] 
[2026-02-01 03:41:20] 2026-02-01 08:40:49,872 | INFO     | **************************************
[2026-02-01 03:41:20] 2026-02-01 08:40:50,374 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-01 03:41:20] 2026-02-01 08:40:50,394 | INFO     | sufficient remaining disk space (17629708288 B)
[2026-02-01 03:41:20] 2026-02-01 08:40:50,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 03:41:20] 2026-02-01 08:40:50,395 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 03:41:20] 2026-02-01 08:40:50,395 | INFO     | update_server=False
[2026-02-01 03:41:20] 2026-02-01 08:40:50,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 03:41:20] 2026-02-01 08:40:50,395 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:41:20] 2026-02-01 08:40:50,396 | INFO     | aborting loop
[2026-02-01 03:41:20] 2026-02-01 08:40:50,768 | INFO     | all payload control threads have been joined
[2026-02-01 03:41:20] 2026-02-01 08:40:51,263 | INFO     | all job control threads have been joined
[2026-02-01 03:41:20] 2026-02-01 08:40:51,282 | INFO     | all data control threads have been joined
[2026-02-01 03:41:20] 2026-02-01 08:40:51,401 | INFO     | [job] job monitor thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:51,402 | INFO     | [job] retrieve thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:51,591 | INFO     | [data] copytool_in thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:51,600 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:51,606 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:51,774 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 03:41:20] 2026-02-01 08:40:51,782 | INFO     | [payload] control thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,094 | INFO     | [payload] validate_post thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,269 | INFO     | [job] control thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,288 | INFO     | [data] control thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,649 | INFO     | [payload] failed_post thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,790 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,837 | INFO     | [job] validate thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:52,882 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:53,109 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 03:41:20] 2026-02-01 08:40:53,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:41:20] 2026-02-01 08:40:53,780 | INFO     | [data] copytool_out thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:54,274 | INFO     | [job] queue monitor thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:40:57,115 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 03:41:20] 2026-02-01 08:41:01,278 | INFO     | [monitor] cgroup control has ended
[2026-02-01 03:41:20] 2026-02-01 08:41:02,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724370974528)>', '<ExcThread(monitor, started 139723196589824)>']
[2026-02-01 03:41:20] 2026-02-01 08:41:07,303 | INFO     | all workflow threads have been joined
[2026-02-01 03:41:20] 2026-02-01 08:41:07,309 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 03:41:20] 2026-02-01 08:41:07,309 | INFO     | traces error code: 0
[2026-02-01 03:41:20] 2026-02-01 08:41:07,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 03:41:20] 2026-02-01 08:41:20,105 | INFO     | PID=7190 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-01 03:41:20] 2026-02-01 08:41:20,107 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 03:41:20] 2026-02-01 08:41:20,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 03:41:20] 2026-02-01 08:41:20,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 03:41:20] 2026-02-01 08:41:20,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 03:41:20] 2026-02-01 08:41:20,107 | INFO     | [monitor] control thread has ended
[2026-02-01 03:41:20] 2026-02-01 08:41:20,228 [wrapper] ==== pilot stdout END ====
[2026-02-01 03:41:20] 2026-02-01 08:41:20,233 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 03:41:20] 2026-02-01 08:41:20,238 [wrapper] pilotpid: 7190
[2026-02-01 03:41:20] 2026-02-01 08:41:20,242 [wrapper] Pilot exit status: 0
[2026-02-01 03:41:20] 2026-02-01 08:41:20,261 [wrapper] pandaids: 6995181793
[2026-02-01 03:41:20] 2026-02-01 08:41:20,307 [wrapper] cleanup supervisor_pilot 11642 7191
[2026-02-01 03:41:20] 2026-02-01 08:41:20,312 [wrapper] Test setup, not cleaning
[2026-02-01 03:41:20] 2026-02-01 08:41:20,317 [wrapper] apfmon messages muted
[2026-02-01 03:41:20] 2026-02-01 08:41:20,322 [wrapper] ==== wrapper stdout END ====
[2026-02-01 03:41:20] 2026-02-01 08:41:20,326 [wrapper] ==== wrapper stderr END ====
[2026-02-01 03:41:20]  *** Error codes and diagnostics ***
[2026-02-01 03:41:20]     "exeErrorCode": 0,
[2026-02-01 03:41:20]     "exeErrorDiag": "",
[2026-02-01 03:41:20]     "pilotErrorCode": 0,
[2026-02-01 03:41:20]     "pilotErrorDiag": "",
[2026-02-01 03:41:20]  *** Listing of results directory ***
[2026-02-01 03:41:20] total 895668
[2026-02-01 03:41:20] -rwx------ 1 boincer umatlas     36322 Jan 31 19:37 runpilot2-wrapper.sh
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas      5111 Jan 31 19:37 queuedata.json
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas    584422 Jan 31 19:37 pilot3.tar.gz
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas       100 Feb  1 00:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 03:41:20] -rwxr-xr-x 1 boincer umatlas      7986 Feb  1 00:48 run_atlas
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas       105 Feb  1 00:48 job.xml
[2026-02-01 03:41:20] -rw-r--r-- 2 boincer umatlas 649845518 Feb  1 00:48 EVNT.48431078._000054.pool.root.1
[2026-02-01 03:41:20] -rw-r--r-- 2 boincer umatlas     15845 Feb  1 00:48 start_atlas.sh
[2026-02-01 03:41:20] drwxrwx--x 2 boincer umatlas      4096 Feb  1 00:48 shared
[2026-02-01 03:41:20] -rw-r--r-- 2 boincer umatlas    597769 Feb  1 00:48 input.tar.gz
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas         0 Feb  1 00:48 boinc_lockfile
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas      2558 Feb  1 00:48 pandaJob.out
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas        57 Feb  1 00:48 setup.sh.local
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas   1010528 Feb  1 00:48 agis_schedconf.cvmfs.json
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas   1511668 Feb  1 00:48 agis_ddmendpoints.agis.ALL.json
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas       432 Feb  1 00:48 workernode_map.json
[2026-02-01 03:41:20] drwx------ 5 boincer umatlas      4096 Feb  1 00:48 pilot3
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas      5911 Feb  1 03:37 init_data.xml
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas       531 Feb  1 03:40 boinc_task_state.xml
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas 259714305 Feb  1 03:40 HITS.48431080._004117.pool.root.1
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas      1047 Feb  1 03:40 memory_monitor_summary.json
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas    392586 Feb  1 03:40 log.48431080._004117.job.log.tgz.1
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas      6396 Feb  1 03:40 heartbeat.json
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas        28 Feb  1 03:40 wrapper_checkpoint.txt
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas      8192 Feb  1 03:40 boinc_mmap_file
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas        95 Feb  1 03:41 pilot_heartbeat.json
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas       744 Feb  1 03:41 pilotlog.txt
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas   1438621 Feb  1 03:41 log.48431080._004117.job.log.1
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas       357 Feb  1 03:41 output.list
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas       620 Feb  1 03:41 runtime_log
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas   1853440 Feb  1 03:41 result.tar.gz
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas       662 Feb  1 03:41 VYWMDm2da68n9Rq4apOajLDm4fhM0noT9bVooX4SDmYdOKDmxJ1a9m.diag
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas      9342 Feb  1 03:41 runtime_log.err
[2026-02-01 03:41:20] -rw-r--r-- 1 boincer umatlas     21302 Feb  1 03:41 stderr.txt
[2026-02-01 03:41:20] HITS file was successfully produced:
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas 259714305 Feb  1 03:40 shared/HITS.pool.root.1
[2026-02-01 03:41:20]  *** Contents of shared directory: ***
[2026-02-01 03:41:20] total 890660
[2026-02-01 03:41:20] -rw-r--r-- 2 boincer umatlas 649845518 Feb  1 00:48 ATLAS.root_0
[2026-02-01 03:41:20] -rw-r--r-- 2 boincer umatlas     15845 Feb  1 00:48 start_atlas.sh
[2026-02-01 03:41:20] -rw-r--r-- 2 boincer umatlas    597769 Feb  1 00:48 input.tar.gz
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas 259714305 Feb  1 03:40 HITS.pool.root.1
[2026-02-01 03:41:20] -rw------- 1 boincer umatlas   1853440 Feb  1 03:41 result.tar.gz
03:41:22 (3435): run_atlas exited; CPU time 76940.689059
03:41:22 (3435): called boinc_finish(0)

</stderr_txt>
]]>

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