Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:56:14 (27868): wrapper (7.7.26015): starting
23:56:14 (27868): wrapper: running run_atlas (--nthreads 8)
[2026-01-31 23:56:14] Arguments: --nthreads 8
[2026-01-31 23:56:14] Threads: 8
[2026-01-31 23:56:14] Checking for CVMFS
[2026-01-31 23:56:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 23:56:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 23:56:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 23:56:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 23:56:14] 2.11.2.0 2466 213697 139588 155738 2 188 16071653 18432000 1833 130560 0 141128277 99.981 8175775 29777 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-31 23:56:14] CVMFS is ok
[2026-01-31 23:56:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 23:56:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 23:56:14] Further information can be found at the LHC@home message board.
[2026-01-31 23:56:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 23:56:14] Checking for apptainer binary...
[2026-01-31 23:56:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 23:56:14] Running /usr/bin/apptainer --version
[2026-01-31 23:56:14] apptainer version 1.3.2-1.el7
[2026-01-31 23:56:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 23:56:15] c-206-20.aglt2.org
[2026-01-31 23:56:15] apptainer works
[2026-01-31 23:56:15] Set ATHENA_PROC_NUMBER=8
[2026-01-31 23:56:15] Set ATHENA_CORE_NUMBER=8
[2026-01-31 23:56:15] Starting ATLAS job with PandaID=6995220804
[2026-01-31 23:56:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 03:00:54]  *** The last 200 lines of the pilot log: ***
[2026-02-01 03:00:54] 2026-02-01 08:00:11,578 | INFO     | mean y: 2443707.4861878455
[2026-02-01 03:00:54] 2026-02-01 08:00:11,578 | INFO     | intersect: -20935825276.78388
[2026-02-01 03:00:54] 2026-02-01 08:00:11,578 | INFO     | chi2: 2.290846845258601
[2026-02-01 03:00:54] 2026-02-01 08:00:11,579 | INFO     | sum of square deviations: 1690450300.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,579 | INFO     | sum of deviations: 33081163333.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,580 | INFO     | mean x: 1769927148.5
[2026-02-01 03:00:54] 2026-02-01 08:00:11,580 | INFO     | mean y: 2455083.397727273
[2026-02-01 03:00:54] 2026-02-01 08:00:11,580 | INFO     | intersect: -34634025555.541756
[2026-02-01 03:00:54] 2026-02-01 08:00:11,580 | INFO     | chi2: 1.4699408627419663
[2026-02-01 03:00:54] 2026-02-01 08:00:11,580 | INFO     | current chi2=1.4699408627419663 (change=35.83417128978638 %)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,580 | INFO     | sum of square deviations: 1550429070.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,581 | INFO     | sum of deviations: 32002489779.999996
[2026-02-01 03:00:54] 2026-02-01 08:00:11,581 | INFO     | mean x: 1769926996.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,581 | INFO     | mean y: 2453908.2807017546
[2026-02-01 03:00:54] 2026-02-01 08:00:11,582 | INFO     | intersect: -36530704361.794876
[2026-02-01 03:00:54] 2026-02-01 08:00:11,582 | INFO     | chi2: 1.4704614799785243
[2026-02-01 03:00:54] 2026-02-01 08:00:11,582 | INFO     | current chi2=1.4704614799785243 (change=-0.035417563369644904 %)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,582 | INFO     | right removable region: 170
[2026-02-01 03:00:54] 2026-02-01 08:00:11,582 | INFO     | sum of square deviations: 1690450300.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,583 | INFO     | sum of deviations: -6633617721.5
[2026-02-01 03:00:54] 2026-02-01 08:00:11,583 | INFO     | mean x: 1769927453.5
[2026-02-01 03:00:54] 2026-02-01 08:00:11,583 | INFO     | mean y: 2472590.0170454546
[2026-02-01 03:00:54] 2026-02-01 08:00:11,583 | INFO     | intersect: 6947972331.30312
[2026-02-01 03:00:54] 2026-02-01 08:00:11,584 | INFO     | chi2: 0.8693209767059754
[2026-02-01 03:00:54] 2026-02-01 08:00:11,584 | INFO     | current chi2=0.8693209767059754 (change=62.05241836636869 %)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,584 | INFO     | sum of square deviations: 1550429070.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,585 | INFO     | sum of deviations: -9183551769.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,585 | INFO     | mean x: 1769927606.0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,585 | INFO     | mean y: 2475308.8596491227
[2026-02-01 03:00:54] 2026-02-01 08:00:11,585 | INFO     | intersect: 10486167927.62823
[2026-02-01 03:00:54] 2026-02-01 08:00:11,585 | INFO     | chi2: 0.8465564048927721
[2026-02-01 03:00:54] 2026-02-01 08:00:11,586 | INFO     | current chi2=0.8465564048927721 (change=2.6186612796878195 %)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,586 | INFO     | left removable region: 20
[2026-02-01 03:00:54] 2026-02-01 08:00:11,586 | INFO     | sum of square deviations: 1046484737.5
[2026-02-01 03:00:54] 2026-02-01 08:00:11,586 | INFO     | sum of deviations: 2391839493.5000005
[2026-02-01 03:00:54] 2026-02-01 08:00:11,587 | INFO     | mean x: 1769927575.5
[2026-02-01 03:00:54] 2026-02-01 08:00:11,587 | INFO     | mean y: 2487788.6866666665
[2026-02-01 03:00:54] 2026-02-01 08:00:11,587 | INFO     | intersect: -4042848491.9254565
[2026-02-01 03:00:54] 2026-02-01 08:00:11,587 | INFO     | chi2: 7.661177803143225e-05
[2026-02-01 03:00:54] 2026-02-01 08:00:11,587 | INFO     | current memory leak: 2.29 B/s (using 150 data points, chi2=0.00)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | could have reported an average CPU frequency of 2439 MHz (10 samples)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | ..............................
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . Timing measurements:
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . get job = 0 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . initial setup = 5 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . payload setup = 4 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . stage-in = 0 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . payload execution = 10997 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . stage-out = 1 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,588 | INFO     | . log creation = 0 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,589 | INFO     | ..............................
[2026-02-01 03:00:54] 2026-02-01 08:00:11,660 | INFO     | 
[2026-02-01 03:00:54] 2026-02-01 08:00:11,662 | INFO     | job summary report
[2026-02-01 03:00:54] 2026-02-01 08:00:11,662 | INFO     | --------------------------------------------------
[2026-02-01 03:00:54] 2026-02-01 08:00:11,662 | INFO     | PanDA job id: 6995220804
[2026-02-01 03:00:54] 2026-02-01 08:00:11,662 | INFO     | task id: 48317872
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | errors: (none)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | pilot state: finished 
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | transexitcode: 0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | exeerrorcode: 0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | exeerrordiag: 
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | exitcode: 0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | exitmsg: OK
[2026-02-01 03:00:54] 2026-02-01 08:00:11,663 | INFO     | cpuconsumptiontime: 83499 s
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | nevents: 400
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | neventsw: 0
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | pid: 3974
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | pgrp: 3974
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | corecount: 8
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | event service: False
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | sizes: {0: 2277894, 1: 2278298, 12: 2278298, 11005: 2307533, 11007: 2316531, 11009: 2316909}
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | --------------------------------------------------
[2026-02-01 03:00:54] 2026-02-01 08:00:11,664 | INFO     | 
[2026-02-01 03:00:54] 2026-02-01 08:00:11,665 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-01 03:00:54] 2026-02-01 08:00:11,681 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,681 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,681 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,681 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,681 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,681 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,682 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | job 6995220804 has completed (purged errors)
[2026-02-01 03:00:54] 2026-02-01 08:00:11,683 | INFO     | overall cleanup function is called
[2026-02-01 03:00:54] 2026-02-01 08:00:12,691 | INFO     | --- collectZombieJob: --- 10, [3974]
[2026-02-01 03:00:54] 2026-02-01 08:00:12,691 | INFO     | zombie collector waiting for pid 3974
[2026-02-01 03:00:54] 2026-02-01 08:00:12,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 03:00:54] 2026-02-01 08:00:12,691 | INFO     | collected zombie processes
[2026-02-01 03:00:54] 2026-02-01 08:00:12,691 | INFO     | will attempt to kill all subprocesses of pid=3974
[2026-02-01 03:00:54] 2026-02-01 08:00:12,799 | INFO     | process IDs to be killed: [3974] (in reverse order)
[2026-02-01 03:00:54] 2026-02-01 08:00:12,837 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 03:00:54] 2026-02-01 08:00:12,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 03:00:54] 2026-02-01 08:00:12,840 | INFO     | did not find any defunct processes belonging to 3974
[2026-02-01 03:00:54] 2026-02-01 08:00:12,843 | INFO     | did not find any defunct processes belonging to 3974
[2026-02-01 03:00:54] 2026-02-01 08:00:12,843 | INFO     | ready for new job
[2026-02-01 03:00:54] 2026-02-01 08:00:12,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 03:00:54] 2026-02-01 08:00:12,844 | INFO     | **************************************
[2026-02-01 03:00:54] 2026-02-01 08:00:12,845 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 03:00:54] 2026-02-01 08:00:12,845 | INFO     | **************************************
[2026-02-01 03:00:54] 2026-02-01 08:00:12,845 | INFO     | 
[2026-02-01 03:00:54] 2026-02-01 08:00:12,846 | INFO     | architecture information:
[2026-02-01 03:00:54] 2026-02-01 08:00:12,846 | INFO     | executing command: cat /etc/os-release
[2026-02-01 03:00:54] 2026-02-01 08:00:12,855 | INFO     | cat /etc/os-release:
[2026-02-01 03:00:54] NAME="CentOS Linux"
[2026-02-01 03:00:54] VERSION="7 (Core)"
[2026-02-01 03:00:54] ID="centos"
[2026-02-01 03:00:54] ID_LIKE="rhel fedora"
[2026-02-01 03:00:54] VERSION_ID="7"
[2026-02-01 03:00:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 03:00:54] ANSI_COLOR="0;31"
[2026-02-01 03:00:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 03:00:54] HOME_URL="https://www.centos.org/"
[2026-02-01 03:00:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 03:00:54] 
[2026-02-01 03:00:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 03:00:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 03:00:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 03:00:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 03:00:54] 
[2026-02-01 03:00:54] 2026-02-01 08:00:12,856 | INFO     | **************************************
[2026-02-01 03:00:54] 2026-02-01 08:00:13,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-01 03:00:54] 2026-02-01 08:00:13,368 | INFO     | sufficient remaining disk space (26116882432 B)
[2026-02-01 03:00:54] 2026-02-01 08:00:13,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 03:00:54] 2026-02-01 08:00:13,369 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 03:00:54] 2026-02-01 08:00:13,369 | INFO     | update_server=False
[2026-02-01 03:00:54] 2026-02-01 08:00:13,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 03:00:54] 2026-02-01 08:00:13,369 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 03:00:54] 2026-02-01 08:00:13,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:00:54] 2026-02-01 08:00:13,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 03:00:54] 2026-02-01 08:00:13,976 | WARNING  | process 3974 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 03:00:54] 2026-02-01 08:00:14,020 | INFO     | all job control threads have been joined
[2026-02-01 03:00:54] 2026-02-01 08:00:14,058 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 03:00:54] 2026-02-01 08:00:14,059 | INFO     | using path: /tmp/boinchome/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 03:00:54] 2026-02-01 08:00:14,059 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-01 03:00:54] 2026-02-01 08:00:14,059 | WARNING  | maxPSS not found in memory monitor output
[2026-02-01 03:00:54] 2026-02-01 08:00:14,060 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/1/PanDA_Pilot-6995220804/payload.stdout) since it has not been created yet
[2026-02-01 03:00:54] 2026-02-01 08:00:14,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-01 03:00:54] 2026-02-01 08:00:14,070 | INFO     | sufficient remaining disk space (26116882432 B)
[2026-02-01 03:00:54] 2026-02-01 08:00:14,071 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-01 03:00:54] 2026-02-01 08:00:14,071 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6995220804/HITS.48317872._016126.pool.root.1 since it does not exist
[2026-02-01 03:00:54] 2026-02-01 08:00:14,130 | INFO     | all payload control threads have been joined
[2026-02-01 03:00:54] 2026-02-01 08:00:14,172 | INFO     | number of running child processes to parent process 3974: 1
[2026-02-01 03:00:54] 2026-02-01 08:00:14,172 | INFO     | maximum number of monitored processes: 6
[2026-02-01 03:00:54] 2026-02-01 08:00:14,172 | INFO     | aborting job monitoring since job object (job id=6995220804) has expired
[2026-02-01 03:00:54] 2026-02-01 08:00:14,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:00:54] 2026-02-01 08:00:14,172 | INFO     | will abort loop
[2026-02-01 03:00:54] 2026-02-01 08:00:14,332 | INFO     | all data control threads have been joined
[2026-02-01 03:00:54] 2026-02-01 08:00:14,374 | INFO     | [job] retrieve thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:14,375 | INFO     | [job] queue monitor thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:14,671 | INFO     | [payload] failed_post thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:14,683 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,026 | INFO     | [job] control thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,131 | INFO     | [payload] control thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,173 | INFO     | [payload] validate_post thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,177 | INFO     | [job] job monitor thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,337 | INFO     | [data] control thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,374 | INFO     | [data] copytool_out thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,386 | INFO     | [job] validate thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,457 | INFO     | [data] copytool_in thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,678 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:15,847 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:17,376 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:24,035 | INFO     | job.realtimelogging is not enabled
[2026-02-01 03:00:54] 2026-02-01 08:00:25,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 03:00:54] 2026-02-01 08:00:43,683 | INFO     | PID=31841 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 03:00:54] 2026-02-01 08:00:43,683 | INFO     | .. there are 3 such processes running
[2026-02-01 03:00:54] 2026-02-01 08:00:43,684 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 03:00:54] 2026-02-01 08:00:43,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 03:00:54] 2026-02-01 08:00:43,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 03:00:54] 2026-02-01 08:00:48,260 | INFO     | [monitor] cgroup control has ended
[2026-02-01 03:00:54] 2026-02-01 08:00:49,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045179897664)>', '<ExcThread(monitor, started 140044320896768)>']
[2026-02-01 03:00:54] 2026-02-01 08:00:49,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 03:00:54] 2026-02-01 08:00:49,703 | INFO     | [monitor] control thread has ended
[2026-02-01 03:00:54] 2026-02-01 08:00:54,690 | INFO     | all workflow threads have been joined
[2026-02-01 03:00:54] 2026-02-01 08:00:54,690 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 03:00:54] 2026-02-01 08:00:54,690 | INFO     | traces error code: 0
[2026-02-01 03:00:54] 2026-02-01 08:00:54,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 03:00:54] 2026-02-01 08:00:54,789 [wrapper] ==== pilot stdout END ====
[2026-02-01 03:00:54] 2026-02-01 08:00:54,791 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 03:00:54] 2026-02-01 08:00:54,794 [wrapper] pilotpid: 31841
[2026-02-01 03:00:54] 2026-02-01 08:00:54,796 [wrapper] Pilot exit status: 0
[2026-02-01 03:00:54] 2026-02-01 08:00:54,805 [wrapper] pandaids: 6995220804
[2026-02-01 03:00:54] 2026-02-01 08:00:54,831 [wrapper] cleanup supervisor_pilot 32686 31842
[2026-02-01 03:00:54] 2026-02-01 08:00:54,834 [wrapper] Test setup, not cleaning
[2026-02-01 03:00:54] 2026-02-01 08:00:54,836 [wrapper] apfmon messages muted
[2026-02-01 03:00:54] 2026-02-01 08:00:54,838 [wrapper] ==== wrapper stdout END ====
[2026-02-01 03:00:54] 2026-02-01 08:00:54,840 [wrapper] ==== wrapper stderr END ====
[2026-02-01 03:00:54]  *** Error codes and diagnostics ***
[2026-02-01 03:00:54]     "exeErrorCode": 0,
[2026-02-01 03:00:54]     "exeErrorDiag": "",
[2026-02-01 03:00:54]     "pilotErrorCode": 0,
[2026-02-01 03:00:54]     "pilotErrorDiag": "",
[2026-02-01 03:00:54]  *** Listing of results directory ***
[2026-02-01 03:00:54] total 674176
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas      5111 Jan 31 19:37 queuedata.json
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas    584422 Jan 31 19:37 pilot3.tar.gz
[2026-02-01 03:00:54] -rwx------ 1 boincer umatlas     36322 Jan 31 19:37 runpilot2-wrapper.sh
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas       100 Jan 31 23:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 03:00:54] -rwxr-xr-x 1 boincer umatlas      7986 Jan 31 23:56 run_atlas
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas       105 Jan 31 23:56 job.xml
[2026-02-01 03:00:54] -rw-r--r-- 2 boincer umatlas 496697188 Jan 31 23:56 EVNT.48317869._000294.pool.root.1
[2026-02-01 03:00:54] -rw-r--r-- 2 boincer umatlas     15845 Jan 31 23:56 start_atlas.sh
[2026-02-01 03:00:54] drwxrwx--x 2 boincer umatlas      4096 Jan 31 23:56 shared
[2026-02-01 03:00:54] -rw-r--r-- 2 boincer umatlas    597752 Jan 31 23:56 input.tar.gz
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas         0 Jan 31 23:56 boinc_lockfile
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas      2519 Jan 31 23:56 pandaJob.out
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas        57 Jan 31 23:56 setup.sh.local
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas   1010520 Jan 31 23:56 agis_schedconf.cvmfs.json
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas       435 Jan 31 23:56 workernode_map.json
[2026-02-01 03:00:54] drwx------ 5 boincer umatlas      4096 Jan 31 23:56 pilot3
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas      5952 Feb  1 02:58 init_data.xml
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas 185737708 Feb  1 02:59 HITS.48317872._016126.pool.root.1
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas       531 Feb  1 02:59 boinc_task_state.xml
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas      1067 Feb  1 03:00 memory_monitor_summary.json
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas   1511668 Feb  1 03:00 agis_ddmendpoints.agis.ALL.json
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas    432339 Feb  1 03:00 log.48317872._016126.job.log.tgz.1
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas      6411 Feb  1 03:00 heartbeat.json
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas      8192 Feb  1 03:00 boinc_mmap_file
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas        28 Feb  1 03:00 wrapper_checkpoint.txt
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas        95 Feb  1 03:00 pilot_heartbeat.json
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas      6368 Feb  1 03:00 pilotlog.txt
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas   1557237 Feb  1 03:00 log.48317872._016126.job.log.1
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas       357 Feb  1 03:00 output.list
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas       620 Feb  1 03:00 runtime_log
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas   2007040 Feb  1 03:00 result.tar.gz
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas      9342 Feb  1 03:00 runtime_log.err
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas       660 Feb  1 03:00 BSmKDmFea68n9Rq4apOajLDm4fhM0noT9bVooX4SDmQgOKDmoPub9m.diag
[2026-02-01 03:00:54] -rw-r--r-- 1 boincer umatlas     21396 Feb  1 03:00 stderr.txt
[2026-02-01 03:00:54] HITS file was successfully produced:
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas 185737708 Feb  1 02:59 shared/HITS.pool.root.1
[2026-02-01 03:00:54]  *** Contents of shared directory: ***
[2026-02-01 03:00:54] total 669008
[2026-02-01 03:00:54] -rw-r--r-- 2 boincer umatlas 496697188 Jan 31 23:56 ATLAS.root_0
[2026-02-01 03:00:54] -rw-r--r-- 2 boincer umatlas     15845 Jan 31 23:56 start_atlas.sh
[2026-02-01 03:00:54] -rw-r--r-- 2 boincer umatlas    597752 Jan 31 23:56 input.tar.gz
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas 185737708 Feb  1 02:59 HITS.pool.root.1
[2026-02-01 03:00:54] -rw------- 1 boincer umatlas   2007040 Feb  1 03:00 result.tar.gz
03:00:56 (27868): run_atlas exited; CPU time 83664.658500
03:00:56 (27868): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN