Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:42 (2340596): wrapper (7.7.26015): starting
20:57:42 (2340596): wrapper: running run_atlas (--nthreads 3)
[2026-02-01 20:57:42] Arguments: --nthreads 3
[2026-02-01 20:57:42] Threads: 3
[2026-02-01 20:57:42] Checking for CVMFS
[2026-02-01 20:57:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 20:57:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 20:57:42] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 20:57:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 20:57:43] 2.9.2.0 1381994 6015 85660 155761 0 50 25996999 36864001 0 130560 0 2760048 99.986 196052 17526 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 20:57:43] CVMFS is ok
[2026-02-01 20:57:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 20:57:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 20:57:43] Further information can be found at the LHC@home message board.
[2026-02-01 20:57:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 20:57:43] Checking for apptainer binary...
[2026-02-01 20:57:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 20:57:43] Running /usr/bin/apptainer --version
[2026-02-01 20:57:43] apptainer version 1.4.1-1.1
[2026-02-01 20:57:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 20:57:43] magicA161a
[2026-02-01 20:57:43] apptainer works
[2026-02-01 20:57:43] Set ATHENA_PROC_NUMBER=3
[2026-02-01 20:57:43] Set ATHENA_CORE_NUMBER=3
[2026-02-01 20:57:43] Starting ATLAS job with PandaID=6995416301
[2026-02-01 20:57:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 22:20:05]  *** The last 200 lines of the pilot log: ***
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | job 6995416301 has completed (purged errors)
[2026-02-01 22:20:05] 2026-02-01 21:19:34,258 | INFO     | overall cleanup function is called
[2026-02-01 22:20:05] 2026-02-01 21:19:35,265 | INFO     | --- collectZombieJob: --- 10, [2349066]
[2026-02-01 22:20:05] 2026-02-01 21:19:35,265 | INFO     | zombie collector waiting for pid 2349066
[2026-02-01 22:20:05] 2026-02-01 21:19:35,265 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 22:20:05] 2026-02-01 21:19:35,265 | INFO     | collected zombie processes
[2026-02-01 22:20:05] 2026-02-01 21:19:35,265 | INFO     | will attempt to kill all subprocesses of pid=2349066
[2026-02-01 22:20:05] 2026-02-01 21:19:35,307 | INFO     | process IDs to be killed: [2349066] (in reverse order)
[2026-02-01 22:20:05] 2026-02-01 21:19:35,330 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 22:20:05] 2026-02-01 21:19:35,330 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 22:20:05] 2026-02-01 21:19:35,331 | INFO     | did not find any defunct processes belonging to 2349066
[2026-02-01 22:20:05] 2026-02-01 21:19:35,332 | INFO     | did not find any defunct processes belonging to 2349066
[2026-02-01 22:20:05] 2026-02-01 21:19:35,332 | INFO     | ready for new job
[2026-02-01 22:20:05] 2026-02-01 21:19:35,332 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 22:20:05] 2026-02-01 21:19:35,333 | INFO     | **************************************
[2026-02-01 22:20:05] 2026-02-01 21:19:35,333 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 22:20:05] 2026-02-01 21:19:35,333 | INFO     | **************************************
[2026-02-01 22:20:05] 2026-02-01 21:19:35,333 | INFO     | 
[2026-02-01 22:20:05] 2026-02-01 21:19:35,334 | INFO     | architecture information:
[2026-02-01 22:20:05] 2026-02-01 21:19:35,334 | INFO     | executing command: cat /etc/os-release
[2026-02-01 22:20:05] 2026-02-01 21:19:35,342 | INFO     | cat /etc/os-release:
[2026-02-01 22:20:05] NAME="CentOS Linux"
[2026-02-01 22:20:05] VERSION="7 (Core)"
[2026-02-01 22:20:05] ID="centos"
[2026-02-01 22:20:05] ID_LIKE="rhel fedora"
[2026-02-01 22:20:05] VERSION_ID="7"
[2026-02-01 22:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 22:20:05] ANSI_COLOR="0;31"
[2026-02-01 22:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 22:20:05] HOME_URL="https://www.centos.org/"
[2026-02-01 22:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 22:20:05] 
[2026-02-01 22:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 22:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 22:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 22:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 22:20:05] 
[2026-02-01 22:20:05] 2026-02-01 21:19:35,342 | INFO     | **************************************
[2026-02-01 22:20:05] 2026-02-01 21:19:35,846 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | INFO     | sufficient remaining disk space (375683809280 B)
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | INFO     | update_server=False
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 22:20:05] 2026-02-01 21:19:35,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 22:20:05] 2026-02-01 21:19:36,225 | INFO     | all data control threads have been joined
[2026-02-01 22:20:05] 2026-02-01 21:19:36,864 | INFO     | [job] retrieve thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:36,864 | INFO     | [job] queue monitor thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:36,943 | INFO     | all job control threads have been joined
[2026-02-01 22:20:05] 2026-02-01 21:19:37,231 | INFO     | [data] control thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:37,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 22:20:05] 2026-02-01 21:19:37,284 | INFO     | all payload control threads have been joined
[2026-02-01 22:20:05] 2026-02-01 21:19:37,284 | INFO     | [payload] validate_post thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:37,590 | WARNING  | process 2349066 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 22:20:05] 2026-02-01 21:19:37,618 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 22:20:05] 2026-02-01 21:19:37,654 | INFO     | number of running child processes to parent process 2349066: 1
[2026-02-01 22:20:05] 2026-02-01 21:19:37,654 | INFO     | maximum number of monitored processes: 6
[2026-02-01 22:20:05] 2026-02-01 21:19:37,654 | INFO     | aborting job monitoring since job object (job id=6995416301) has expired
[2026-02-01 22:20:05] 2026-02-01 21:19:37,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 22:20:05] 2026-02-01 21:19:37,654 | INFO     | will abort loop
[2026-02-01 22:20:05] 2026-02-01 21:19:37,940 | INFO     | [job] validate thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:37,949 | INFO     | [job] control thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,041 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,045 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,080 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,184 | INFO     | [data] copytool_in thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,289 | INFO     | [payload] control thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,354 | INFO     | [payload] failed_post thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:38,660 | INFO     | [job] job monitor thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:39,290 | INFO     | [data] copytool_out thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:39,866 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:46,527 | INFO     | job.realtimelogging is not enabled
[2026-02-01 22:20:05] 2026-02-01 21:19:47,532 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 22:20:05] 2026-02-01 21:19:58,531 | INFO     | [monitor] cgroup control has ended
[2026-02-01 22:20:05] 2026-02-01 21:20:00,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122869495616)>', '<ExcThread(monitor, started 140122007783168)>']
[2026-02-01 22:20:05] 2026-02-01 21:20:05,452 | INFO     | all workflow threads have been joined
[2026-02-01 22:20:05] 2026-02-01 21:20:05,452 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 22:20:05] 2026-02-01 21:20:05,452 | INFO     | traces error code: 0
[2026-02-01 22:20:05] 2026-02-01 21:20:05,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 22:20:05] 2026-02-01 21:20:05,566 | INFO     | PID=2344643 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 22:20:05] 2026-02-01 21:20:05,566 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 22:20:05] 2026-02-01 21:20:05,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 22:20:05] 2026-02-01 21:20:05,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 22:20:05] 2026-02-01 21:20:05,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 22:20:05] 2026-02-01 21:20:05,567 | INFO     | [monitor] control thread has ended
[2026-02-01 22:20:05] 2026-02-01 21:20:05,612 [wrapper] ==== pilot stdout END ====
[2026-02-01 22:20:05] 2026-02-01 21:20:05,615 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 22:20:05] 2026-02-01 21:20:05,617 [wrapper] pilotpid: 2344643
[2026-02-01 22:20:05] 2026-02-01 21:20:05,619 [wrapper] Pilot exit status: 0
[2026-02-01 22:20:05] 2026-02-01 21:20:05,626 [wrapper] pandaids: 6995416301
[2026-02-01 22:20:05] 2026-02-01 21:20:05,642 [wrapper] cleanup supervisor_pilot 2354148 2344644
[2026-02-01 22:20:05] 2026-02-01 21:20:05,644 [wrapper] Test setup, not cleaning
[2026-02-01 22:20:05] 2026-02-01 21:20:05,647 [wrapper] apfmon messages muted
[2026-02-01 22:20:05] 2026-02-01 21:20:05,649 [wrapper] ==== wrapper stdout END ====
[2026-02-01 22:20:05] 2026-02-01 21:20:05,651 [wrapper] ==== wrapper stderr END ====
[2026-02-01 22:20:05]  *** Error codes and diagnostics ***
[2026-02-01 22:20:05]     "exeErrorCode": 0,
[2026-02-01 22:20:05]     "exeErrorDiag": "",
[2026-02-01 22:20:05]     "pilotErrorCode": 0,
[2026-02-01 22:20:05]     "pilotErrorDiag": "",
[2026-02-01 22:20:05]  *** Listing of results directory ***
[2026-02-01 22:20:05] total 665728
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc    584422 Feb  1 05:35 pilot3.tar.gz
[2026-02-01 22:20:05] -rwx------ 1 boinc boinc     36322 Feb  1 05:38 runpilot2-wrapper.sh
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc      5111 Feb  1 05:41 queuedata.json
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc       100 Feb  1 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 22:20:05] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 20:57 run_atlas
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc       105 Feb  1 20:57 job.xml
[2026-02-01 22:20:05] -rw-r--r-- 2 boinc boinc 492300032 Feb  1 20:57 EVNT.48317929._000193.pool.root.1
[2026-02-01 22:20:05] -rw-r--r-- 2 boinc boinc    597765 Feb  1 20:57 input.tar.gz
[2026-02-01 22:20:05] -rw-r--r-- 2 boinc boinc     15845 Feb  1 20:57 start_atlas.sh
[2026-02-01 22:20:05] drwxrwx--x 2 boinc boinc      4096 Feb  1 20:57 shared
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc         0 Feb  1 20:57 boinc_setup_complete
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc      6448 Feb  1 20:57 init_data.xml
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc         0 Feb  1 20:57 boinc_lockfile
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc      2512 Feb  1 20:57 pandaJob.out
[2026-02-01 22:20:05] -rw------- 1 boinc boinc   1009765 Feb  1 20:57 agis_schedconf.cvmfs.json
[2026-02-01 22:20:05] -rw------- 1 boinc boinc   1511668 Feb  1 20:57 agis_ddmendpoints.agis.ALL.json
[2026-02-01 22:20:05] -rw------- 1 boinc boinc       419 Feb  1 20:57 workernode_map.json
[2026-02-01 22:20:05] drwx------ 5 boinc boinc      4096 Feb  1 20:57 pilot3
[2026-02-01 22:20:05] -rw------- 1 boinc boinc        95 Feb  1 22:19 pilot_heartbeat.json
[2026-02-01 22:20:05] -rw------- 1 boinc boinc 183502582 Feb  1 22:19 HITS.48317931._010740.pool.root.1
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc       530 Feb  1 22:19 boinc_task_state.xml
[2026-02-01 22:20:05] -rw------- 1 boinc boinc      1012 Feb  1 22:19 memory_monitor_summary.json
[2026-02-01 22:20:05] -rw------- 1 boinc boinc    269655 Feb  1 22:19 log.48317931._010740.job.log.tgz.1
[2026-02-01 22:20:05] -rw------- 1 boinc boinc      6311 Feb  1 22:19 heartbeat.json
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc      8192 Feb  1 22:19 boinc_mmap_file
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc        27 Feb  1 22:19 wrapper_checkpoint.txt
[2026-02-01 22:20:05] -rw------- 1 boinc boinc       747 Feb  1 22:20 pilotlog.txt
[2026-02-01 22:20:05] -rw------- 1 boinc boinc    719614 Feb  1 22:20 log.48317931._010740.job.log.1
[2026-02-01 22:20:05] -rw------- 1 boinc boinc       357 Feb  1 22:20 output.list
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc       620 Feb  1 22:20 runtime_log
[2026-02-01 22:20:05] -rw------- 1 boinc boinc   1003520 Feb  1 22:20 result.tar.gz
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc      8916 Feb  1 22:20 runtime_log.err
[2026-02-01 22:20:05] -rw------- 1 boinc boinc       661 Feb  1 22:20 GovNDm0Oe68n9Rq4apOajLDm4fhM0noT9bVooX4SDmGAPKDmLNDhin.diag
[2026-02-01 22:20:05] -rw-r--r-- 1 boinc boinc     12558 Feb  1 22:20 stderr.txt
[2026-02-01 22:20:05] HITS file was successfully produced:
[2026-02-01 22:20:05] -rw------- 1 boinc boinc 183502582 Feb  1 22:19 shared/HITS.pool.root.1
[2026-02-01 22:20:05]  *** Contents of shared directory: ***
[2026-02-01 22:20:05] total 661556
[2026-02-01 22:20:05] -rw-r--r-- 2 boinc boinc 492300032 Feb  1 20:57 ATLAS.root_0
[2026-02-01 22:20:05] -rw-r--r-- 2 boinc boinc    597765 Feb  1 20:57 input.tar.gz
[2026-02-01 22:20:05] -rw-r--r-- 2 boinc boinc     15845 Feb  1 20:57 start_atlas.sh
[2026-02-01 22:20:05] -rw------- 1 boinc boinc 183502582 Feb  1 22:19 HITS.pool.root.1
[2026-02-01 22:20:05] -rw------- 1 boinc boinc   1003520 Feb  1 22:20 result.tar.gz
22:20:07 (2340596): run_atlas exited; CPU time 14020.256618
22:20:07 (2340596): called boinc_finish(0)

</stderr_txt>
]]>

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