Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-02-01 04:54:47 (67089): vboxwrapper version 26210
2026-02-01 04:54:47 (67089): BOINC client version: 8.2.8
2026-02-01 04:54:47 (67089): Detected: VirtualBox VboxManage Interface (Version: 7.2.6)
2026-02-01 04:54:47 (67089): Successfully copied 'init_data.xml' to the shared directory.
2026-02-01 04:54:47 (67089): Create VM. (boinc_6ba332b0338b66ce, slot#4)
2026-02-01 04:54:55 (67089): Setting Memory Size for VM. (4100MB)
2026-02-01 04:54:55 (67089): Setting CPU Count for VM. (1)
2026-02-01 04:54:55 (67089): Setting Chipset Options for VM.
2026-02-01 04:54:55 (67089): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-02-01 04:54:55 (67089): Setting Boot Options for VM.
2026-02-01 04:54:55 (67089): Setting Network Configuration for NAT. (Driver: virtio)
2026-02-01 04:54:55 (67089): Enabling VM Network Access.
2026-02-01 04:54:55 (67089): Disabling USB Support for VM.
2026-02-01 04:54:55 (67089): Disabling COM Port Support for VM.
2026-02-01 04:54:55 (67089): Disabling LPT Port Support for VM.
2026-02-01 04:54:55 (67089): Disabling Audio Support for VM.
2026-02-01 04:54:55 (67089): Disabling Clipboard Support for VM.
2026-02-01 04:54:55 (67089): Disabling Drag and Drop Support for VM.
2026-02-01 04:54:55 (67089): Adding storage controller(s) to VM.
2026-02-01 04:54:55 (67089): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-02-01 04:54:56 (67089): Adding VirtualBox Guest Additions to VM.
2026-02-01 04:54:56 (67089): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-02-01 04:54:56 (67089): forwarding host port 46755 to guest port 80
2026-02-01 04:54:56 (67089): Enabling remote desktop for VM.
2026-02-01 04:54:56 (67089): Required extension pack not installed, remote desktop not enabled.
2026-02-01 04:54:56 (67089): Enabling shared directory for VM.
2026-02-01 04:54:56 (67089): Starting VM using VBoxManage interface. (boinc_6ba332b0338b66ce, slot#4)
2026-02-01 04:54:57 (67089): Successfully started VM. (PID = '67696')
2026-02-01 04:54:57 (67089): Reporting VM Process ID to BOINC.
2026-02-01 04:54:57 (67089): Guest Log: BIOS: VirtualBox 7.2.6
2026-02-01 04:54:57 (67089): Guest Log: CPUID EDX: 0x178bfbff
2026-02-01 04:54:57 (67089): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-02-01 04:54:57 (67089): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-02-01 04:54:57 (67089): VM state change detected. (old = 'poweredoff', new = 'running')
2026-02-01 04:54:57 (67089): Detected: Web Application Enabled (http://localhost:46755)
2026-02-01 04:54:57 (67089): Preference change detected
2026-02-01 04:54:57 (67089): Setting CPU throttle for VM. (100%)
2026-02-01 04:54:57 (67089): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-02-01 04:54:59 (67089): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-02-01 04:54:59 (67089): Guest Log: BIOS: Booting from Hard Disk...
2026-02-01 04:55:02 (67089): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-02-01 04:55:02 (67089): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-02-01 04:55:02 (67089): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-02-01 04:55:05 (67089): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-02-01 04:55:05 (67089): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-02-01 04:55:13 (67089): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000167 main     Log opened 2026-02-01T04:55:10.886871000Z
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000299 main     OS Product: Linux
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000346 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000373 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000393 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000394 main     Process ID: 1247
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.000394 main     Package type: LINUX_64BITS_GENERIC
2026-02-01 04:55:13 (67089): Guest Log: 00:00:00.001892 main     5.2.32 r132073 started. Verbose level = 0
2026-02-01 04:55:13 (67089): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-02-01 04:55:13 (67089): Guest Log: [INFO] Mounting shared directory
2026-02-01 04:55:13 (67089): Guest Log: [INFO] Checking for init_data.xml
2026-02-01 04:55:17 (67089): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-02-01 04:55:17 (67089): Guest Log: [INFO] Detected branch: prod
2026-02-01 04:55:17 (67089): Guest Log: This is the prod version of the ATLAS job wrapper
2026-02-01 04:55:17 (67089): Guest Log: Copying input files
2026-02-01 04:56:17 (67089): Guest Log: Copied input files into RunAtlas.
2026-02-01 04:56:17 (67089): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-02-01 04:56:17 (67089): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-02-01 04:56:17 (67089): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-02-01 04:56:17 (67089): Guest Log: Further information can be found at the LHC@home message board.
2026-02-01 04:56:45 (67089): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-02-01 04:56:46 (67089): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-02-01 04:56:46 (67089): Guest Log: 2.6.3.0 1516 1 32124 155738 4 1 3117739 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-02-01 04:56:49 (67089): Guest Log: copied the webapp to /var/www
2026-02-01 04:56:49 (67089): Guest Log: core_number=1
2026-02-01 04:57:01 (67089): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-02-01 04:57:01 (67089): Guest Log:  *** Starting ATLAS job. (PandaID=6995182005 taskID=48431080) ***
2026-02-01 06:33:59 (67089): Status Report: Elapsed Time: '6000.908190'
2026-02-01 06:33:59 (67089): Status Report: CPU Time: '4163.440000'
2026-02-01 08:12:59 (67089): Status Report: Elapsed Time: '12000.931373'
2026-02-01 08:12:59 (67089): Status Report: CPU Time: '10109.760000'
2026-02-01 09:52:00 (67089): Status Report: Elapsed Time: '18000.931373'
2026-02-01 09:52:00 (67089): Status Report: CPU Time: '16051.880000'
2026-02-01 11:31:01 (67089): Status Report: Elapsed Time: '24001.320814'
2026-02-01 11:31:01 (67089): Status Report: CPU Time: '21994.520000'
2026-02-01 13:10:01 (67089): Status Report: Elapsed Time: '30001.647428'
2026-02-01 13:10:01 (67089): Status Report: CPU Time: '27923.110000'
2026-02-01 14:32:41 (67089): Guest Log:  *** Job finished ***
2026-02-01 14:32:41 (67089): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:44,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:44,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:44,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:44,517 | INFO     | [monitor] control thread has ended
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,360 | INFO     | all workflow threads have been joined
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,361 | INFO     | end of generic workflow (traces error code: 0)
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,361 | INFO     | traces error code: 0
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,442 [wrapper] ==== pilot stdout END ====
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,446 [wrapper] ==== wrapper stdout RESUME ====
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,449 [wrapper] pilotpid: 5952
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:29:46,452 [wrapper] Pilot exit status: 0
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:31:15,172 [wrapper] supervise_pilot (15 min periods counter: 39)
2026-02-01 14:32:41 (67089): Guest Log: ./runpilot2-wrapper.sh: line 1019: /usr/bin/xargs: Input/output error
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:32:35,642 [wrapper] pandaids: 
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:32:35,666 [wrapper] cleanup supervisor_pilot  1879 5953
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:32:35,669 [wrapper] Test setup, not cleaning
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:32:35,672 [wrapper] apfmon messages muted
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:32:35,675 [wrapper] ==== wrapper stdout END ====
2026-02-01 14:32:41 (67089): Guest Log: 2026-02-01 14:32:35,679 [wrapper] ==== wrapper stderr END ====
2026-02-01 14:32:41 (67089): Guest Log:  *** Error codes and diagnostics ***
2026-02-01 14:32:41 (67089): Guest Log:     "exeErrorCode": 68,
2026-02-01 14:32:41 (67089): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc::::ExcNoDictForClass: Can't find dictionary information for class: EventStreamInfo_p1\"\"",
2026-02-01 14:32:41 (67089): Guest Log:     "pilotErrorCode": 1305,
2026-02-01 14:32:41 (67089): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"AthenaPoolCnvSvc                                                 FATAL AthenaPoolCnvSvc:",
2026-02-01 14:32:41 (67089): Guest Log:  *** Listing of results directory ***
2026-02-01 14:32:41 (67089): Guest Log: total 14284
2026-02-01 14:32:41 (67089): Guest Log: -rwx------. 1 atlas atlas   36322 Feb  1 00:40 runpilot2-wrapper.sh
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas  584422 Feb  1 00:41 pilot3.tar.gz
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Feb  1 00:42 queuedata.json
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas   15845 Feb  1 04:55 start_atlas.sh
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas    9222 Feb  1 04:55 init_data.xml
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas  597771 Feb  1 04:55 input.tar.gz
2026-02-01 14:32:41 (67089): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb  1 04:56 EVNT.48431078._000084.pool.root.1 -> /data/./ATLAS.root_0
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas    2559 Feb  1 04:56 pandaJob.out
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas     428 Feb  1 05:05 workernode_map.json
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas 1010520 Feb  1 05:06 agis_schedconf.cvmfs.json
2026-02-01 14:32:41 (67089): Guest Log: drwx------. 5 atlas atlas    4096 Feb  1 05:06 pilot3
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas    1040 Feb  1 14:24 memory_monitor_summary.json
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas  657266 Feb  1 14:27 log.48431080._004329.job.log.tgz.1
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas 1511668 Feb  1 14:27 agis_ddmendpoints.agis.ALL.json
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas      95 Feb  1 14:28 pilot_heartbeat.json
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas    8859 Feb  1 14:29 heartbeat.json
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas    4801 Feb  1 14:29 pilotlog.txt
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas 4715086 Feb  1 14:32 log.48431080._004329.job.log.1
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas     188 Feb  1 14:32 output.list
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas     659 Feb  1 14:32 YHVNDm8ga68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmr8OKDmyOhS8n.diag
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas    8485 Feb  1 14:32 runtime_log.err
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb  1 14:32 runtime_log
2026-02-01 14:32:41 (67089): Guest Log: -rw-------. 1 atlas atlas 5396480 Feb  1 14:32 result.tar.gz
2026-02-01 14:32:41 (67089): Guest Log: Looking for outputfile HITS.48431080._004329.pool.root.1
2026-02-01 14:32:41 (67089): Guest Log: No HITS file was produced
2026-02-01 14:32:41 (67089): Guest Log: Successfully finished the ATLAS job!
2026-02-01 14:32:41 (67089): Guest Log: Copying the results back to the shared directory!
2026-02-01 14:32:41 (67089): Guest Log:  *** Contents of shared directory: ***
2026-02-01 14:32:41 (67089): Guest Log: total 640648
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 root root 649990197 Feb  1 04:54 ATLAS.root_0
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 root root      9222 Feb  1 04:54 init_data.xml
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 root root    597771 Feb  1 04:54 input.tar.gz
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 root root   5396480 Feb  1 14:32 result.tar.gz
2026-02-01 14:32:41 (67089): Guest Log: -rw-r--r--. 1 root root     15845 Feb  1 04:54 start_atlas.sh
2026-02-01 14:32:41 (67089): Guest Log:  *** Success! Shutting down the machine. ***
2026-02-01 14:32:41 (67089): VM Completion File Detected.
2026-02-01 14:32:41 (67089): Powering off VM.
2026-02-01 14:32:41 (67089): Successfully stopped VM.
2026-02-01 14:32:41 (67089): Deregistering VM. (boinc_6ba332b0338b66ce, slot#4)
2026-02-01 14:32:41 (67089): Removing network bandwidth throttle group from VM.
2026-02-01 14:32:41 (67089): Removing VM from VirtualBox.
2026-02-01 14:32:46 (67089): called boinc_finish(0)

</stderr_txt>
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