Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
21:23:36 (2604599): wrapper (7.7.26015): starting
21:23:36 (2604599): wrapper: running run_atlas (--nthreads 12)
[2026-02-01 21:23:36] Arguments: --nthreads 12
[2026-02-01 21:23:36] Threads: 12
[2026-02-01 21:23:36] Checking for CVMFS
[2026-02-01 21:23:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 21:23:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 21:23:37] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 21:23:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 21:23:38] 2.13.3.0 1749563 5888 51408 155763 0 50 2957301 4096000 2736 130560 0 6823517 99.994 197624 1003 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-02-01 21:23:38] CVMFS is ok
[2026-02-01 21:23:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 21:23:38] Checking for apptainer binary...
[2026-02-01 21:23:38] apptainer is not installed, using version from CVMFS
[2026-02-01 21:23:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 21:23:38] dualxeon2
[2026-02-01 21:23:38] apptainer works
[2026-02-01 21:23:38] Set ATHENA_PROC_NUMBER=12
[2026-02-01 21:23:38] Set ATHENA_CORE_NUMBER=12
[2026-02-01 21:23:38] Starting ATLAS job with PandaID=6994937328
[2026-02-01 21:23:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 23:40:34]  *** The last 200 lines of the pilot log: ***
[2026-02-01 23:40:34] 2026-02-01 23:39:33,570 | INFO     | log transfer has been attempted: DONE
[2026-02-01 23:40:34] 2026-02-01 23:39:33,570 | INFO     | job 6994937328 has finished - writing final server update
[2026-02-01 23:40:34] 2026-02-01 23:39:33,574 | INFO     | total number of processed events: 400 (read)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,589 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/11/PanDA_Pilot-6994937328/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,590 | INFO     | extracted standard info from prmon json
[2026-02-01 23:40:34] 2026-02-01 23:39:33,590 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 23:40:34] 2026-02-01 23:39:33,590 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 23:40:34] 2026-02-01 23:39:33,590 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 23:40:34] 2026-02-01 23:39:33,591 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 23:40:34] 2026-02-01 23:39:33,597 | INFO     | fitting pss+swap vs Time
[2026-02-01 23:40:34] 2026-02-01 23:39:33,597 | INFO     | sum of square deviations: 729472282.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,598 | INFO     | sum of deviations: -14804262324.999998
[2026-02-01 23:40:34] 2026-02-01 23:39:33,598 | INFO     | mean x: 1769985103.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,598 | INFO     | mean y: 2706266.796992481
[2026-02-01 23:40:34] 2026-02-01 23:39:33,599 | INFO     | intersect: 35923637634.21273
[2026-02-01 23:40:34] 2026-02-01 23:39:33,599 | INFO     | chi2: 2.7781638830037503
[2026-02-01 23:40:34] 2026-02-01 23:39:33,599 | INFO     | sum of square deviations: 650252192.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,600 | INFO     | sum of deviations: -4053432035.5
[2026-02-01 23:40:34] 2026-02-01 23:39:33,600 | INFO     | mean x: 1769984950.5
[2026-02-01 23:40:34] 2026-02-01 23:39:33,603 | INFO     | mean y: 2726393.0546875
[2026-02-01 23:40:34] 2026-02-01 23:39:33,604 | INFO     | intersect: 11036158942.728556
[2026-02-01 23:40:34] 2026-02-01 23:39:33,604 | INFO     | chi2: 1.9620417069643876
[2026-02-01 23:40:34] 2026-02-01 23:39:33,604 | INFO     | current chi2=1.9620417069643876 (change=29.376315091857414 %)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,604 | INFO     | sum of square deviations: 576985702.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,605 | INFO     | sum of deviations: -3222221848.999994
[2026-02-01 23:40:34] 2026-02-01 23:39:33,605 | INFO     | mean x: 1769984798.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,605 | INFO     | mean y: 2728124.024390244
[2026-02-01 23:40:34] 2026-02-01 23:39:33,605 | INFO     | intersect: 9887346874.097752
[2026-02-01 23:40:34] 2026-02-01 23:39:33,606 | INFO     | chi2: 1.9638002673839685
[2026-02-01 23:40:34] 2026-02-01 23:39:33,606 | INFO     | current chi2=1.9638002673839685 (change=-0.0896291048930699 %)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,606 | INFO     | right removable region: 122
[2026-02-01 23:40:34] 2026-02-01 23:39:33,606 | INFO     | sum of square deviations: 650252192.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,607 | INFO     | sum of deviations: -40354108085.5
[2026-02-01 23:40:34] 2026-02-01 23:39:33,607 | INFO     | mean x: 1769985255.5
[2026-02-01 23:40:34] 2026-02-01 23:39:33,607 | INFO     | mean y: 2754815.6484375
[2026-02-01 23:40:34] 2026-02-01 23:39:33,613 | INFO     | intersect: 109846561863.03526
[2026-02-01 23:40:34] 2026-02-01 23:39:33,614 | INFO     | chi2: 1.0574728264681912
[2026-02-01 23:40:34] 2026-02-01 23:39:33,614 | INFO     | current chi2=1.0574728264681912 (change=61.9362690251069 %)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,614 | INFO     | sum of square deviations: 576985702.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,615 | INFO     | sum of deviations: -41857889937.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,615 | INFO     | mean x: 1769985408.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,615 | INFO     | mean y: 2757770.8943089433
[2026-02-01 23:40:34] 2026-02-01 23:39:33,615 | INFO     | intersect: 128407767013.49776
[2026-02-01 23:40:34] 2026-02-01 23:39:33,616 | INFO     | chi2: 0.988696898443188
[2026-02-01 23:40:34] 2026-02-01 23:39:33,616 | INFO     | current chi2=0.988696898443188 (change=6.50380097753481 %)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,616 | INFO     | left removable region: 20
[2026-02-01 23:40:34] 2026-02-01 23:39:33,616 | INFO     | sum of square deviations: 329031285.5
[2026-02-01 23:40:34] 2026-02-01 23:39:33,621 | INFO     | sum of deviations: -20129151673.0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,621 | INFO     | mean x: 1769985377.5
[2026-02-01 23:40:34] 2026-02-01 23:39:33,621 | INFO     | mean y: 2762049.568627451
[2026-02-01 23:40:34] 2026-02-01 23:39:33,621 | INFO     | intersect: 108285182879.39474
[2026-02-01 23:40:34] 2026-02-01 23:39:33,621 | INFO     | chi2: 0.09939754409187261
[2026-02-01 23:40:34] 2026-02-01 23:39:33,622 | INFO     | current memory leak: -61.18 B/s (using 102 data points, chi2=0.10)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,622 | INFO     | could have reported an average CPU frequency of 2594 MHz (8 samples)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,622 | INFO     | ..............................
[2026-02-01 23:40:34] 2026-02-01 23:39:33,622 | INFO     | . Timing measurements:
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . get job = 0 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . initial setup = 14 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . payload setup = 12 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . stage-in = 0 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . payload execution = 8095 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . stage-out = 1 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | . log creation = 0 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,623 | INFO     | ..............................
[2026-02-01 23:40:34] 2026-02-01 23:39:33,852 | INFO     | 
[2026-02-01 23:40:34] 2026-02-01 23:39:33,852 | INFO     | job summary report
[2026-02-01 23:40:34] 2026-02-01 23:39:33,852 | INFO     | --------------------------------------------------
[2026-02-01 23:40:34] 2026-02-01 23:39:33,852 | INFO     | PanDA job id: 6994937328
[2026-02-01 23:40:34] 2026-02-01 23:39:33,852 | INFO     | task id: 48317952
[2026-02-01 23:40:34] 2026-02-01 23:39:33,852 | INFO     | errors: (none)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | pilot state: finished 
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | transexitcode: 0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | exeerrorcode: 0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | exeerrordiag: 
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | exitcode: 0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | exitmsg: OK
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | cpuconsumptiontime: 60549 s
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | nevents: 400
[2026-02-01 23:40:34] 2026-02-01 23:39:33,853 | INFO     | neventsw: 0
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | pid: 2616029
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | pgrp: 2616029
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | corecount: 12
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | event service: False
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | sizes: {0: 2277182, 1: 2278324, 2: 2278352, 8111: 2305970, 8112: 2315016, 8116: 2315072, 8118: 2315394}
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | --------------------------------------------------
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | 
[2026-02-01 23:40:34] 2026-02-01 23:39:33,854 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/11
[2026-02-01 23:40:34] 2026-02-01 23:39:33,896 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,897 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,898 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,899 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,899 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 23:40:34] 2026-02-01 23:39:33,899 | INFO     | job 6994937328 has completed (purged errors)
[2026-02-01 23:40:34] 2026-02-01 23:39:33,899 | INFO     | overall cleanup function is called
[2026-02-01 23:40:34] 2026-02-01 23:39:34,915 | INFO     | --- collectZombieJob: --- 10, [2616029]
[2026-02-01 23:40:34] 2026-02-01 23:39:34,916 | INFO     | zombie collector waiting for pid 2616029
[2026-02-01 23:40:34] 2026-02-01 23:39:34,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 23:40:34] 2026-02-01 23:39:34,916 | INFO     | collected zombie processes
[2026-02-01 23:40:34] 2026-02-01 23:39:34,916 | INFO     | will attempt to kill all subprocesses of pid=2616029
[2026-02-01 23:40:34] 2026-02-01 23:39:35,278 | INFO     | process IDs to be killed: [2616029] (in reverse order)
[2026-02-01 23:40:34] 2026-02-01 23:39:35,374 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 23:40:34] 2026-02-01 23:39:35,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 23:40:34] 2026-02-01 23:39:35,384 | INFO     | did not find any defunct processes belonging to 2616029
[2026-02-01 23:40:34] 2026-02-01 23:39:35,391 | INFO     | did not find any defunct processes belonging to 2616029
[2026-02-01 23:40:34] 2026-02-01 23:39:35,391 | INFO     | ready for new job
[2026-02-01 23:40:34] 2026-02-01 23:39:35,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 23:40:34] 2026-02-01 23:39:35,397 | INFO     | **************************************
[2026-02-01 23:40:34] 2026-02-01 23:39:35,397 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 23:40:34] 2026-02-01 23:39:35,397 | INFO     | **************************************
[2026-02-01 23:40:34] 2026-02-01 23:39:35,398 | INFO     | 
[2026-02-01 23:40:34] 2026-02-01 23:39:35,403 | INFO     | architecture information:
[2026-02-01 23:40:34] 2026-02-01 23:39:35,403 | INFO     | executing command: cat /etc/os-release
[2026-02-01 23:40:34] 2026-02-01 23:39:35,428 | INFO     | cat /etc/os-release:
[2026-02-01 23:40:34] NAME="CentOS Linux"
[2026-02-01 23:40:34] VERSION="7 (Core)"
[2026-02-01 23:40:34] ID="centos"
[2026-02-01 23:40:34] ID_LIKE="rhel fedora"
[2026-02-01 23:40:34] VERSION_ID="7"
[2026-02-01 23:40:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 23:40:34] ANSI_COLOR="0;31"
[2026-02-01 23:40:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 23:40:34] HOME_URL="https://www.centos.org/"
[2026-02-01 23:40:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 23:40:34] 
[2026-02-01 23:40:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 23:40:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 23:40:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 23:40:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 23:40:34] 
[2026-02-01 23:40:34] 2026-02-01 23:39:35,428 | INFO     | **************************************
[2026-02-01 23:40:34] 2026-02-01 23:39:35,931 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/11
[2026-02-01 23:40:34] 2026-02-01 23:39:35,959 | INFO     | sufficient remaining disk space (74237083648 B)
[2026-02-01 23:40:34] 2026-02-01 23:39:35,960 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 23:40:34] 2026-02-01 23:39:35,960 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 23:40:34] 2026-02-01 23:39:35,960 | INFO     | update_server=False
[2026-02-01 23:40:34] 2026-02-01 23:39:35,960 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 23:40:34] 2026-02-01 23:39:36,320 | INFO     | all payload control threads have been joined
[2026-02-01 23:40:34] 2026-02-01 23:39:36,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 23:40:34] 2026-02-01 23:39:36,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 23:40:34] 2026-02-01 23:39:36,704 | INFO     | aborting loop
[2026-02-01 23:40:34] 2026-02-01 23:39:36,970 | INFO     | [job] retrieve thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,032 | INFO     | all data control threads have been joined
[2026-02-01 23:40:34] 2026-02-01 23:39:37,117 | INFO     | all job control threads have been joined
[2026-02-01 23:40:34] 2026-02-01 23:39:37,234 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,326 | INFO     | [payload] control thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,516 | INFO     | [payload] validate_post thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,619 | INFO     | [job] validate thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,682 | INFO     | [payload] failed_post thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,709 | INFO     | [job] job monitor thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:37,995 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 23:40:34] 2026-02-01 23:39:38,037 | INFO     | [data] control thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:38,124 | INFO     | [job] control thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:38,177 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:38,226 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:38,395 | INFO     | [data] copytool_in thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:38,502 | INFO     | [data] copytool_out thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:38,863 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 23:40:34] 2026-02-01 23:39:39,870 | INFO     | [job] queue monitor thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:42,000 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:39:46,268 | INFO     | job.realtimelogging is not enabled
[2026-02-01 23:40:34] 2026-02-01 23:39:47,273 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 23:40:34] 2026-02-01 23:40:05,593 | INFO     | PID=2609917 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 23:40:34] 2026-02-01 23:40:05,593 | INFO     | .. there are 4 such processes running
[2026-02-01 23:40:34] 2026-02-01 23:40:05,594 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 23:40:34] 2026-02-01 23:40:05,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 23:40:34] 2026-02-01 23:40:05,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 23:40:34] 2026-02-01 23:40:27,111 | INFO     | [monitor] cgroup control has ended
[2026-02-01 23:40:34] 2026-02-01 23:40:29,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128684519712576)>', '<ExcThread(monitor, started 128684149151488)>']
[2026-02-01 23:40:34] 2026-02-01 23:40:29,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 23:40:34] 2026-02-01 23:40:29,720 | INFO     | [monitor] control thread has ended
[2026-02-01 23:40:34] 2026-02-01 23:40:34,077 | INFO     | all workflow threads have been joined
[2026-02-01 23:40:34] 2026-02-01 23:40:34,078 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 23:40:34] 2026-02-01 23:40:34,078 | INFO     | traces error code: 0
[2026-02-01 23:40:34] 2026-02-01 23:40:34,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 23:40:34] 2026-02-01 23:40:34,340 [wrapper] ==== pilot stdout END ====
[2026-02-01 23:40:34] 2026-02-01 23:40:34,348 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 23:40:34] 2026-02-01 23:40:34,354 [wrapper] pilotpid: 2609917
[2026-02-01 23:40:34] 2026-02-01 23:40:34,359 [wrapper] Pilot exit status: 0
[2026-02-01 23:40:34] 2026-02-01 23:40:34,383 [wrapper] pandaids: 6994937328
[2026-02-01 23:40:34] 2026-02-01 23:40:34,454 [wrapper] cleanup supervisor_pilot 3019104 2609918
[2026-02-01 23:40:34] 2026-02-01 23:40:34,462 [wrapper] Test setup, not cleaning
[2026-02-01 23:40:34] 2026-02-01 23:40:34,470 [wrapper] apfmon messages muted
[2026-02-01 23:40:34] 2026-02-01 23:40:34,475 [wrapper] ==== wrapper stdout END ====
[2026-02-01 23:40:34] 2026-02-01 23:40:34,480 [wrapper] ==== wrapper stderr END ====
[2026-02-01 23:40:34]  *** Error codes and diagnostics ***
[2026-02-01 23:40:34]     "exeErrorCode": 0,
[2026-02-01 23:40:34]     "exeErrorDiag": "",
[2026-02-01 23:40:34]     "pilotErrorCode": 0,
[2026-02-01 23:40:34]     "pilotErrorDiag": "",
[2026-02-01 23:40:34]  *** Listing of results directory ***
[2026-02-01 23:40:34] total 673948
[2026-02-01 23:40:34] -rw-r--r-- 1 boinc boinc    584422 Jan 31 18:13 pilot3.tar.gz
[2026-02-01 23:40:34] -rwx------ 1 boinc boinc     36322 Jan 31 18:17 runpilot2-wrapper.sh
[2026-02-01 23:40:34] -rw-r--r-- 1 boinc boinc      5111 Jan 31 18:21 queuedata.json
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc       100 Feb  1 21:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 23:40:34] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 21:23 run_atlas
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc       105 Feb  1 21:23 job.xml
[2026-02-01 23:40:34] -rw-r--r-- 2 boinc boinc 496030394 Feb  1 21:23 EVNT.48317949._000098.pool.root.1
[2026-02-01 23:40:34] -rw-r--r-- 2 boinc boinc     15845 Feb  1 21:23 start_atlas.sh
[2026-02-01 23:40:34] drwxrwx--x 2 boinc boinc      4096 Feb  1 21:23 shared
[2026-02-01 23:40:34] -rw-r--r-- 2 boinc boinc    597756 Feb  1 21:23 input.tar.gz
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc      6156 Feb  1 21:23 init_data.xml
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc         0 Feb  1 21:23 boinc_setup_complete
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc         0 Feb  1 21:23 boinc_lockfile
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc      2522 Feb  1 21:23 pandaJob.out
[2026-02-01 23:40:34] -rw------- 1 boinc boinc   1009765 Feb  1 21:24 agis_schedconf.cvmfs.json
[2026-02-01 23:40:34] -rw------- 1 boinc boinc   1511668 Feb  1 21:24 agis_ddmendpoints.agis.ALL.json
[2026-02-01 23:40:34] -rw------- 1 boinc boinc       424 Feb  1 21:24 workernode_map.json
[2026-02-01 23:40:34] drwx------ 5 boinc boinc      4096 Feb  1 21:24 pilot3
[2026-02-01 23:40:34] -rw------- 1 boinc boinc 186866386 Feb  1 23:38 HITS.48317952._005277.pool.root.1
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc       531 Feb  1 23:39 boinc_task_state.xml
[2026-02-01 23:40:34] -rw------- 1 boinc boinc      1031 Feb  1 23:39 memory_monitor_summary.json
[2026-02-01 23:40:34] -rw------- 1 boinc boinc    457937 Feb  1 23:39 log.48317952._005277.job.log.tgz.1
[2026-02-01 23:40:34] -rw------- 1 boinc boinc      6334 Feb  1 23:39 heartbeat.json
[2026-02-01 23:40:34] -rw------- 1 boinc boinc        95 Feb  1 23:40 pilot_heartbeat.json
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc      8192 Feb  1 23:40 boinc_mmap_file
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc        27 Feb  1 23:40 wrapper_checkpoint.txt
[2026-02-01 23:40:34] -rw------- 1 boinc boinc      4915 Feb  1 23:40 pilotlog.txt
[2026-02-01 23:40:34] -rw------- 1 boinc boinc   1185637 Feb  1 23:40 log.48317952._005277.job.log.1
[2026-02-01 23:40:34] -rw------- 1 boinc boinc       357 Feb  1 23:40 output.list
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc       620 Feb  1 23:40 runtime_log
[2026-02-01 23:40:34] -rw------- 1 boinc boinc   1658880 Feb  1 23:40 result.tar.gz
[2026-02-01 23:40:34] -rw------- 1 boinc boinc       653 Feb  1 23:40 yPjLDmbiU68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYbOKDmi5AHln.diag
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc      9187 Feb  1 23:40 runtime_log.err
[2026-02-01 23:40:34] -rw-rw-r-- 1 boinc boinc     20802 Feb  1 23:40 stderr.txt
[2026-02-01 23:40:34] HITS file was successfully produced:
[2026-02-01 23:40:34] -rw------- 1 boinc boinc 186866386 Feb  1 23:38 shared/HITS.pool.root.1
[2026-02-01 23:40:34]  *** Contents of shared directory: ***
[2026-02-01 23:40:34] total 669124
[2026-02-01 23:40:34] -rw-r--r-- 2 boinc boinc 496030394 Feb  1 21:23 ATLAS.root_0
[2026-02-01 23:40:34] -rw-r--r-- 2 boinc boinc     15845 Feb  1 21:23 start_atlas.sh
[2026-02-01 23:40:34] -rw-r--r-- 2 boinc boinc    597756 Feb  1 21:23 input.tar.gz
[2026-02-01 23:40:34] -rw------- 1 boinc boinc 186866386 Feb  1 23:38 HITS.pool.root.1
[2026-02-01 23:40:34] -rw------- 1 boinc boinc   1658880 Feb  1 23:40 result.tar.gz
23:40:36 (2604599): run_atlas exited; CPU time 60665.130396
23:40:36 (2604599): called boinc_finish(0)

</stderr_txt>
]]>

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