Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:40:11 (7743): wrapper (7.7.26015): starting
13:40:11 (7743): wrapper: running run_atlas (--nthreads 8)
[2026-02-01 13:40:11] Arguments: --nthreads 8
[2026-02-01 13:40:11] Threads: 8
[2026-02-01 13:40:11] Checking for CVMFS
[2026-02-01 13:40:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 13:40:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 13:40:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 13:40:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 13:40:16] 2.11.2.0 5583 68548 135676 155751 2 94 16813291 25165824 937 130560 0 21706836 99.847 15304040 3506 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-01 13:40:16] CVMFS is ok
[2026-02-01 13:40:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 13:40:16] Checking for apptainer binary...
[2026-02-01 13:40:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 13:40:16] Running /usr/bin/apptainer --version
[2026-02-01 13:40:16] apptainer version 1.3.2-1.el7
[2026-02-01 13:40:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 13:40:46] cg-vwn382.simple-grid.lan
[2026-02-01 13:40:46] apptainer works
[2026-02-01 13:40:46] Set ATHENA_PROC_NUMBER=8
[2026-02-01 13:40:46] Set ATHENA_CORE_NUMBER=8
[2026-02-01 13:40:46] Starting ATLAS job with PandaID=6994937801
[2026-02-01 13:40:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 18:47:09]  *** The last 200 lines of the pilot log: ***
[2026-02-01 18:47:09] 2026-02-01 17:45:54,231 | INFO     | total number of processed events: 400 (read)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,234 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6994937801/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,234 | INFO     | extracted standard info from prmon json
[2026-02-01 18:47:09] 2026-02-01 17:45:54,235 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 18:47:09] 2026-02-01 17:45:54,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 18:47:09] 2026-02-01 17:45:54,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 18:47:09] 2026-02-01 17:45:54,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 18:47:09] 2026-02-01 17:45:54,241 | INFO     | fitting pss+swap vs Time
[2026-02-01 18:47:09] 2026-02-01 17:45:54,242 | INFO     | sum of square deviations: 7484568240.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,245 | INFO     | sum of deviations: 159462051878.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,245 | INFO     | mean x: 1769959133.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,245 | INFO     | mean y: 2497014.84083045
[2026-02-01 18:47:09] 2026-02-01 17:45:54,245 | INFO     | intersect: -37707268737.57696
[2026-02-01 18:47:09] 2026-02-01 17:45:54,246 | INFO     | chi2: 7.551882597550838
[2026-02-01 18:47:09] 2026-02-01 17:45:54,246 | INFO     | sum of square deviations: 7102775035.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,252 | INFO     | sum of deviations: 175827484701.99997
[2026-02-01 18:47:09] 2026-02-01 17:45:54,252 | INFO     | mean x: 1769958980.5
[2026-02-01 18:47:09] 2026-02-01 17:45:54,252 | INFO     | mean y: 2503441.971830986
[2026-02-01 18:47:09] 2026-02-01 17:45:54,252 | INFO     | intersect: -43812404679.643936
[2026-02-01 18:47:09] 2026-02-01 17:45:54,253 | INFO     | chi2: 6.834168155143155
[2026-02-01 18:47:09] 2026-02-01 17:45:54,253 | INFO     | current chi2=6.834168155143155 (change=9.503781780723735 %)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,253 | INFO     | right removable region: 283
[2026-02-01 18:47:09] 2026-02-01 17:45:54,254 | INFO     | sum of square deviations: 7102775035.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,257 | INFO     | sum of deviations: 57539445325.49997
[2026-02-01 18:47:09] 2026-02-01 17:45:54,257 | INFO     | mean x: 1769959285.5
[2026-02-01 18:47:09] 2026-02-01 17:45:54,257 | INFO     | mean y: 2537703.63028169
[2026-02-01 18:47:09] 2026-02-01 17:45:54,257 | INFO     | intersect: -14335868769.12776
[2026-02-01 18:47:09] 2026-02-01 17:45:54,258 | INFO     | chi2: 2.8270326780923583
[2026-02-01 18:47:09] 2026-02-01 17:45:54,258 | INFO     | current chi2=2.8270326780923583 (change=62.56519296249127 %)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,258 | INFO     | sum of square deviations: 6734191380.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,261 | INFO     | sum of deviations: -6593132967.000002
[2026-02-01 18:47:09] 2026-02-01 17:45:54,261 | INFO     | mean x: 1769959438.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,261 | INFO     | mean y: 2564147.440860215
[2026-02-01 18:47:09] 2026-02-01 17:45:54,262 | INFO     | intersect: 1735448953.118984
[2026-02-01 18:47:09] 2026-02-01 17:45:54,262 | INFO     | chi2: 0.872193367094401
[2026-02-01 18:47:09] 2026-02-01 17:45:54,262 | INFO     | current chi2=0.872193367094401 (change=69.14809744318397 %)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,263 | INFO     | sum of square deviations: 6378584712.5
[2026-02-01 18:47:09] 2026-02-01 17:45:54,266 | INFO     | sum of deviations: -12132534365.999996
[2026-02-01 18:47:09] 2026-02-01 17:45:54,266 | INFO     | mean x: 1769959590.5
[2026-02-01 18:47:09] 2026-02-01 17:45:54,266 | INFO     | mean y: 2566494.4890510947
[2026-02-01 18:47:09] 2026-02-01 17:45:54,266 | INFO     | intersect: 3369159010.8649993
[2026-02-01 18:47:09] 2026-02-01 17:45:54,267 | INFO     | chi2: 0.8370444190625491
[2026-02-01 18:47:09] 2026-02-01 17:45:54,267 | INFO     | current chi2=0.8370444190625491 (change=4.029949017950689 %)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,267 | INFO     | left removable region: 30
[2026-02-01 18:47:09] 2026-02-01 17:45:54,267 | INFO     | sum of square deviations: 5021496942.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,270 | INFO     | sum of deviations: 13683990859.000002
[2026-02-01 18:47:09] 2026-02-01 17:45:54,270 | INFO     | mean x: 1769959865.0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,270 | INFO     | mean y: 2571141.537549407
[2026-02-01 18:47:09] 2026-02-01 17:45:54,270 | INFO     | intersect: -4820714602.376556
[2026-02-01 18:47:09] 2026-02-01 17:45:54,271 | INFO     | chi2: 0.0018784658307931957
[2026-02-01 18:47:09] 2026-02-01 17:45:54,271 | INFO     | current memory leak: 2.73 B/s (using 253 data points, chi2=0.00)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,271 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | ..............................
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . Timing measurements:
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . get job = 0 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . initial setup = 128 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . payload setup = 145 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . stage-in = 0 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . payload execution = 17735 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,272 | INFO     | . stage-out = 3 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,273 | INFO     | . log creation = 1 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,273 | INFO     | ..............................
[2026-02-01 18:47:09] 2026-02-01 17:45:54,402 | INFO     | 
[2026-02-01 18:47:09] 2026-02-01 17:45:54,402 | INFO     | job summary report
[2026-02-01 18:47:09] 2026-02-01 17:45:54,402 | INFO     | --------------------------------------------------
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | PanDA job id: 6994937801
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | task id: 48431096
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | errors: (none)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | pilot state: finished 
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | transexitcode: 0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | exeerrorcode: 0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | exeerrordiag: 
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | exitcode: 0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,403 | INFO     | exitmsg: OK
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | cpuconsumptiontime: 86915 s
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | nevents: 400
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | neventsw: 0
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | pid: 16291
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | pgrp: 16291
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | corecount: 8
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | event service: False
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | sizes: {0: 2277172, 1: 2277858, 2: 2278319, 13: 2278319, 17885: 2310677, 17889: 2319677, 17891: 2319861, 17894: 2320055}
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | --------------------------------------------------
[2026-02-01 18:47:09] 2026-02-01 17:45:54,404 | INFO     | 
[2026-02-01 18:47:09] 2026-02-01 17:45:54,405 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-02-01 18:47:09] 2026-02-01 17:45:54,523 | INFO     | PID=11821 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 18:47:09] 2026-02-01 17:45:54,524 | INFO     | .. there are 2 such processes running
[2026-02-01 18:47:09] 2026-02-01 17:45:54,857 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,857 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,857 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,857 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | job 6994937801 has completed (purged errors)
[2026-02-01 18:47:09] 2026-02-01 17:45:54,859 | INFO     | overall cleanup function is called
[2026-02-01 18:47:09] 2026-02-01 17:45:55,868 | INFO     | --- collectZombieJob: --- 10, [16291]
[2026-02-01 18:47:09] 2026-02-01 17:45:55,868 | INFO     | zombie collector waiting for pid 16291
[2026-02-01 18:47:09] 2026-02-01 17:45:55,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 18:47:09] 2026-02-01 17:45:55,868 | INFO     | collected zombie processes
[2026-02-01 18:47:09] 2026-02-01 17:45:55,868 | INFO     | will attempt to kill all subprocesses of pid=16291
[2026-02-01 18:47:09] 2026-02-01 17:45:55,958 | INFO     | process IDs to be killed: [16291] (in reverse order)
[2026-02-01 18:47:09] 2026-02-01 17:45:56,973 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 18:47:09] 2026-02-01 17:45:56,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 18:47:09] 2026-02-01 17:45:56,976 | INFO     | did not find any defunct processes belonging to 16291
[2026-02-01 18:47:09] 2026-02-01 17:45:56,978 | INFO     | did not find any defunct processes belonging to 16291
[2026-02-01 18:47:09] 2026-02-01 17:45:56,978 | INFO     | ready for new job
[2026-02-01 18:47:09] 2026-02-01 17:45:56,978 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 18:47:09] 2026-02-01 17:45:56,980 | INFO     | **************************************
[2026-02-01 18:47:09] 2026-02-01 17:45:56,981 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 18:47:09] 2026-02-01 17:45:56,981 | INFO     | **************************************
[2026-02-01 18:47:09] 2026-02-01 17:45:56,981 | INFO     | 
[2026-02-01 18:47:09] 2026-02-01 17:45:56,982 | INFO     | pilot is running in a VM
[2026-02-01 18:47:09] 2026-02-01 17:45:56,982 | INFO     | architecture information:
[2026-02-01 18:47:09] 2026-02-01 17:45:56,993 | INFO     | executing command: cat /etc/os-release
[2026-02-01 18:47:09] 2026-02-01 17:45:57,299 | INFO     | cat /etc/os-release:
[2026-02-01 18:47:09] NAME="CentOS Linux"
[2026-02-01 18:47:09] VERSION="7 (Core)"
[2026-02-01 18:47:09] ID="centos"
[2026-02-01 18:47:09] ID_LIKE="rhel fedora"
[2026-02-01 18:47:09] VERSION_ID="7"
[2026-02-01 18:47:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 18:47:09] ANSI_COLOR="0;31"
[2026-02-01 18:47:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 18:47:09] HOME_URL="https://www.centos.org/"
[2026-02-01 18:47:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 18:47:09] 
[2026-02-01 18:47:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 18:47:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 18:47:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 18:47:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 18:47:09] 
[2026-02-01 18:47:09] 2026-02-01 17:45:57,300 | INFO     | **************************************
[2026-02-01 18:47:09] 2026-02-01 17:45:57,803 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-02-01 18:47:09] 2026-02-01 17:45:58,008 | INFO     | sufficient remaining disk space (495875784704 B)
[2026-02-01 18:47:09] 2026-02-01 17:45:58,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 18:47:09] 2026-02-01 17:45:58,009 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 18:47:09] 2026-02-01 17:45:58,009 | INFO     | update_server=False
[2026-02-01 18:47:09] 2026-02-01 17:45:58,009 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 18:47:09] 2026-02-01 17:45:58,010 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 18:47:09] 2026-02-01 17:45:58,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 18:47:09] 2026-02-01 17:45:58,382 | INFO     | all data control threads have been joined
[2026-02-01 18:47:09] 2026-02-01 17:45:58,583 | INFO     | all payload control threads have been joined
[2026-02-01 18:47:09] 2026-02-01 17:45:58,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 18:47:09] 2026-02-01 17:45:58,876 | INFO     | aborting loop
[2026-02-01 18:47:09] 2026-02-01 17:45:59,016 | INFO     | [job] retrieve thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,135 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,272 | INFO     | all job control threads have been joined
[2026-02-01 18:47:09] 2026-02-01 17:45:59,300 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,380 | INFO     | [job] validate thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,388 | INFO     | [data] control thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,421 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 18:47:09] 2026-02-01 17:45:59,569 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,589 | INFO     | [payload] control thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:45:59,882 | INFO     | [job] job monitor thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,014 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,218 | INFO     | [payload] validate_post thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,278 | INFO     | [job] control thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,292 | INFO     | [data] copytool_out thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,382 | INFO     | [payload] failed_post thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,424 | INFO     | [data] copytool_in thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:00,428 | INFO     | [job] queue monitor thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:02,024 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 18:47:09] 2026-02-01 17:46:26,720 | INFO     | PID=11821 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 18:47:09] 2026-02-01 17:46:26,720 | INFO     | .. there are 2 such processes running
[2026-02-01 18:47:09] 2026-02-01 17:46:26,721 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 18:47:09] 2026-02-01 17:46:26,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 18:47:09] 2026-02-01 17:46:26,722 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 18:47:09] 2026-02-01 17:46:57,454 | INFO     | [monitor] cgroup control has ended
[2026-02-01 18:47:09] 2026-02-01 17:46:58,771 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140056977098560)>', '<ExcThread(monitor, started 140056249489152)>']
[2026-02-01 18:47:09] 2026-02-01 17:46:58,913 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 18:47:09] 2026-02-01 17:46:58,913 | INFO     | [monitor] control thread has ended
[2026-02-01 18:47:09] 2026-02-01 17:47:03,797 | INFO     | all workflow threads have been joined
[2026-02-01 18:47:09] 2026-02-01 17:47:03,797 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 18:47:09] 2026-02-01 17:47:03,797 | INFO     | traces error code: 0
[2026-02-01 18:47:09] 2026-02-01 17:47:03,798 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 18:47:09] 2026-02-01 17:47:04,351 [wrapper] ==== pilot stdout END ====
[2026-02-01 18:47:09] 2026-02-01 17:47:04,489 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 18:47:09] 2026-02-01 17:47:04,553 [wrapper] pilotpid: 11821
[2026-02-01 18:47:09] 2026-02-01 17:47:04,664 [wrapper] Pilot exit status: 0
[2026-02-01 18:47:09] 2026-02-01 17:47:05,124 [wrapper] pandaids: 6994937801
[2026-02-01 18:47:09] 2026-02-01 17:47:06,141 [wrapper] cleanup supervisor_pilot 10818 11822
[2026-02-01 18:47:09] 2026-02-01 17:47:06,215 [wrapper] Test setup, not cleaning
[2026-02-01 18:47:09] 2026-02-01 17:47:06,313 [wrapper] apfmon messages muted
[2026-02-01 18:47:09] 2026-02-01 17:47:06,443 [wrapper] ==== wrapper stdout END ====
[2026-02-01 18:47:09] 2026-02-01 17:47:06,586 [wrapper] ==== wrapper stderr END ====
[2026-02-01 18:47:09]  *** Error codes and diagnostics ***
[2026-02-01 18:47:09]     "exeErrorCode": 0,
[2026-02-01 18:47:09]     "exeErrorDiag": "",
[2026-02-01 18:47:09]     "pilotErrorCode": 0,
[2026-02-01 18:47:09]     "pilotErrorDiag": "",
[2026-02-01 18:47:09]  *** Listing of results directory ***
[2026-02-01 18:47:09] total 945060
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc    584422 Feb  1 00:05 pilot3.tar.gz
[2026-02-01 18:47:09] -rwx------. 1 boinc boinc     36322 Feb  1 00:09 runpilot2-wrapper.sh
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc      5111 Feb  1 00:11 queuedata.json
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc       100 Feb  1 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 18:47:09] -rwxr-xr-x. 1 boinc boinc      7986 Feb  1 13:40 run_atlas
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc       105 Feb  1 13:40 job.xml
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc      6392 Feb  1 13:40 init_data.xml
[2026-02-01 18:47:09] -rw-r--r--. 2 boinc boinc 675145394 Feb  1 13:40 EVNT.48431094._000034.pool.root.1
[2026-02-01 18:47:09] -rw-r--r--. 2 boinc boinc     15845 Feb  1 13:40 start_atlas.sh
[2026-02-01 18:47:09] drwxrwx--x. 2 boinc boinc        68 Feb  1 13:40 shared
[2026-02-01 18:47:09] -rw-r--r--. 2 boinc boinc    597772 Feb  1 13:40 input.tar.gz
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc         0 Feb  1 13:40 boinc_lockfile
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc      2552 Feb  1 13:40 pandaJob.out
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc       415 Feb  1 13:47 workernode_map.json
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc   1010528 Feb  1 13:47 agis_schedconf.cvmfs.json
[2026-02-01 18:47:09] drwx------. 5 boinc boinc      4096 Feb  1 13:47 pilot3
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc 282603559 Feb  1 18:44 HITS.48431096._001710.pool.root.1
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc       532 Feb  1 18:44 boinc_task_state.xml
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc      1020 Feb  1 18:45 memory_monitor_summary.json
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc   1511668 Feb  1 18:45 agis_ddmendpoints.agis.ALL.json
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc    504905 Feb  1 18:45 log.48431096._001710.job.log.tgz.1
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc      6322 Feb  1 18:45 heartbeat.json
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc        95 Feb  1 18:46 pilot_heartbeat.json
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc      8192 Feb  1 18:46 boinc_mmap_file
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc        28 Feb  1 18:46 wrapper_checkpoint.txt
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc      4881 Feb  1 18:47 pilotlog.txt
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc   2526784 Feb  1 18:47 log.48431096._001710.job.log.1
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc       357 Feb  1 18:47 output.list
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc       620 Feb  1 18:47 runtime_log
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc   3051520 Feb  1 18:47 result.tar.gz
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc      8832 Feb  1 18:47 runtime_log.err
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc       655 Feb  1 18:47 oDnNDmjGZ68n9Rq4apOajLDm4fhM0noT9bVooX4SDmqcOKDmg8bu3n.diag
[2026-02-01 18:47:09] -rw-r--r--. 1 boinc boinc     20814 Feb  1 18:47 stderr.txt
[2026-02-01 18:47:09] HITS file was successfully produced:
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc 282603559 Feb  1 18:44 shared/HITS.pool.root.1
[2026-02-01 18:47:09]  *** Contents of shared directory: ***
[2026-02-01 18:47:09] total 938888
[2026-02-01 18:47:09] -rw-r--r--. 2 boinc boinc 675145394 Feb  1 13:40 ATLAS.root_0
[2026-02-01 18:47:09] -rw-r--r--. 2 boinc boinc     15845 Feb  1 13:40 start_atlas.sh
[2026-02-01 18:47:09] -rw-r--r--. 2 boinc boinc    597772 Feb  1 13:40 input.tar.gz
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc 282603559 Feb  1 18:44 HITS.pool.root.1
[2026-02-01 18:47:09] -rw-------. 1 boinc boinc   3051520 Feb  1 18:47 result.tar.gz
18:47:11 (7743): run_atlas exited; CPU time 87114.046599
18:47:11 (7743): called boinc_finish(0)

</stderr_txt>
]]>

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