Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:24:54 (4134230): wrapper (7.7.26015): starting
10:24:54 (4134230): wrapper: running run_atlas (--nthreads 12)
[2026-02-01 10:24:54] Arguments: --nthreads 12
[2026-02-01 10:24:54] Threads: 12
[2026-02-01 10:24:54] Checking for CVMFS
[2026-02-01 10:24:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 10:24:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 10:24:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 10:24:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 10:24:56] 2.13.3.0 3937 4890 174160 155745 2 140 41107069 46080000 72807 130560 0 31435182 99.913 8149541 18683 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-01 10:24:56] CVMFS is ok
[2026-02-01 10:24:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 10:24:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 10:24:56] Further information can be found at the LHC@home message board.
[2026-02-01 10:24:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 10:24:56] Checking for apptainer binary...
[2026-02-01 10:24:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 10:24:56] Running /usr/bin/apptainer --version
[2026-02-01 10:24:56] apptainer version 1.4.5-2.el9
[2026-02-01 10:24:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 10:24:56] mff2104.farm.particle.cz
[2026-02-01 10:24:56] apptainer works
[2026-02-01 10:24:56] Set ATHENA_PROC_NUMBER=12
[2026-02-01 10:24:56] Set ATHENA_CORE_NUMBER=12
[2026-02-01 10:24:56] Starting ATLAS job with PandaID=6994860811
[2026-02-01 10:24:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 12:44:42]  *** The last 200 lines of the pilot log: ***
[2026-02-01 12:44:42] 2026-02-01 11:37:24,468 | INFO     | total number of processed events: 400 (read)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,504 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6994860811/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,505 | INFO     | extracted standard info from prmon json
[2026-02-01 12:44:42] 2026-02-01 11:37:24,509 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 12:44:42] 2026-02-01 11:37:24,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 12:44:42] 2026-02-01 11:37:24,510 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 12:44:42] 2026-02-01 11:37:24,510 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 12:44:42] 2026-02-01 11:37:24,512 | INFO     | fitting pss+swap vs Time
[2026-02-01 12:44:42] 2026-02-01 11:37:24,512 | INFO     | sum of square deviations: 650264149.96875
[2026-02-01 12:44:42] 2026-02-01 11:37:24,512 | INFO     | sum of deviations: 24956503555.5
[2026-02-01 12:44:42] 2026-02-01 11:37:24,513 | INFO     | mean x: 1769941930.515625
[2026-02-01 12:44:42] 2026-02-01 11:37:24,513 | INFO     | mean y: 2602886.25
[2026-02-01 12:44:42] 2026-02-01 11:37:24,513 | INFO     | intersect: -67926041317.90073
[2026-02-01 12:44:42] 2026-02-01 11:37:24,513 | INFO     | chi2: 3.4268969469446247
[2026-02-01 12:44:42] 2026-02-01 11:37:24,513 | INFO     | sum of square deviations: 576998269.9674811
[2026-02-01 12:44:42] 2026-02-01 11:37:24,526 | INFO     | sum of deviations: 32514682501.17074
[2026-02-01 12:44:42] 2026-02-01 11:37:24,526 | INFO     | mean x: 1769941778.0162601
[2026-02-01 12:44:42] 2026-02-01 11:37:24,526 | INFO     | mean y: 2618048.4146341463
[2026-02-01 12:44:42] 2026-02-01 11:37:24,526 | INFO     | intersect: -99736147131.93802
[2026-02-01 12:44:42] 2026-02-01 11:37:24,527 | INFO     | chi2: 2.7383936601131547
[2026-02-01 12:44:42] 2026-02-01 11:37:24,527 | INFO     | current chi2=2.7383936601131547 (change=20.09115819620226 %)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,527 | INFO     | right removable region: 122
[2026-02-01 12:44:42] 2026-02-01 11:37:24,527 | INFO     | sum of square deviations: 576997049.9674811
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | sum of deviations: -7542281545.186992
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | mean x: 1769942083.0162601
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | mean y: 2669951.5934959347
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | intersect: 23138666070.69968
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | chi2: 0.8943554839185152
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | current chi2=0.8943554839185152 (change=73.90188564859208 %)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,528 | INFO     | sum of square deviations: 509450987.46610177
[2026-02-01 12:44:42] 2026-02-01 11:37:24,529 | INFO     | sum of deviations: -14830697534.898308
[2026-02-01 12:44:42] 2026-02-01 11:37:24,529 | INFO     | mean x: 1769942235.5169492
[2026-02-01 12:44:42] 2026-02-01 11:37:24,529 | INFO     | mean y: 2686248.9491525423
[2026-02-01 12:44:42] 2026-02-01 11:37:24,542 | INFO     | intersect: 51527717301.99078
[2026-02-01 12:44:42] 2026-02-01 11:37:24,543 | INFO     | chi2: 0.7404389965863328
[2026-02-01 12:44:42] 2026-02-01 11:37:24,543 | INFO     | current chi2=0.7404389965863328 (change=17.209766150011742 %)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,543 | INFO     | left removable region: 20
[2026-02-01 12:44:42] 2026-02-01 11:37:24,544 | INFO     | sum of square deviations: 329041535.460785
[2026-02-01 12:44:42] 2026-02-01 11:37:24,545 | INFO     | sum of deviations: -4895984547.931373
[2026-02-01 12:44:42] 2026-02-01 11:37:24,545 | INFO     | mean x: 1769942357.5196078
[2026-02-01 12:44:42] 2026-02-01 11:37:24,545 | INFO     | mean y: 2702693.7156862747
[2026-02-01 12:44:42] 2026-02-01 11:37:24,545 | INFO     | intersect: 26338619285.552734
[2026-02-01 12:44:42] 2026-02-01 11:37:24,546 | INFO     | chi2: 0.0076499531917381385
[2026-02-01 12:44:42] 2026-02-01 11:37:24,546 | INFO     | current memory leak: -14.88 B/s (using 102 data points, chi2=0.01)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,547 | INFO     | could have reported an average CPU frequency of 2730 MHz (8 samples)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,547 | INFO     | ..............................
[2026-02-01 12:44:42] 2026-02-01 11:37:24,560 | INFO     | . Timing measurements:
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . get job = 0 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . initial setup = 26 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . payload setup = 32 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . stage-in = 0 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . payload execution = 7807 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . stage-out = 1 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | . log creation = 0 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,561 | INFO     | ..............................
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | 
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | job summary report
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | --------------------------------------------------
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | PanDA job id: 6994860811
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | task id: 48317892
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | errors: (none)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,751 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | pilot state: finished 
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | transexitcode: 0
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | exeerrorcode: 0
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | exeerrordiag: 
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | exitcode: 0
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | exitmsg: OK
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | cpuconsumptiontime: 44090 s
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | nevents: 400
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | neventsw: 0
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | pid: 4166505
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | pgrp: 4166505
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | corecount: 12
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | event service: False
[2026-02-01 12:44:42] 2026-02-01 11:37:24,752 | INFO     | sizes: {0: 2277127, 1: 2277813, 2: 2278274, 13: 2278274, 7843: 2306070, 7844: 2306069, 7846: 2315253, 7848: 2315309, 7851: 2315503}
[2026-02-01 12:44:42] 2026-02-01 11:37:24,753 | INFO     | --------------------------------------------------
[2026-02-01 12:44:42] 2026-02-01 11:37:24,753 | INFO     | 
[2026-02-01 12:44:42] 2026-02-01 11:37:24,753 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,946 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,947 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,947 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 12:44:42] 2026-02-01 11:37:24,947 | INFO     | job 6994860811 has completed (purged errors)
[2026-02-01 12:44:42] 2026-02-01 11:37:24,947 | INFO     | overall cleanup function is called
[2026-02-01 12:44:42] 2026-02-01 11:37:25,059 | WARNING  | process 4166505 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 12:44:42] 2026-02-01 11:37:25,924 | INFO     | using path: /scratch/.boinc/slots/4/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 12:44:42] 2026-02-01 11:37:25,925 | INFO     | skipping file size check of payload stdout file (/scratch/.boinc/slots/4/PanDA_Pilot-6994860811/payload.stdout) since it has not been created yet
[2026-02-01 12:44:42] 2026-02-01 11:37:25,925 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2026-02-01 12:44:42] 2026-02-01 11:37:25,962 | INFO     | --- collectZombieJob: --- 10, [4166505]
[2026-02-01 12:44:42] 2026-02-01 11:37:25,963 | INFO     | zombie collector waiting for pid 4166505
[2026-02-01 12:44:42] 2026-02-01 11:37:25,963 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 12:44:42] 2026-02-01 11:37:25,963 | INFO     | collected zombie processes
[2026-02-01 12:44:42] 2026-02-01 11:37:25,964 | INFO     | will attempt to kill all subprocesses of pid=4166505
[2026-02-01 12:44:42] 2026-02-01 11:37:26,058 | INFO     | sufficient remaining disk space (1061725143040 B)
[2026-02-01 12:44:42] 2026-02-01 11:37:26,059 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-01 12:44:42] 2026-02-01 11:37:26,059 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/4/PanDA_Pilot-6994860811/HITS.48317892._003421.pool.root.1 since it does not exist
[2026-02-01 12:44:42] 2026-02-01 11:37:28,294 | INFO     | process IDs to be killed: [4166505] (in reverse order)
[2026-02-01 12:44:42] 2026-02-01 11:37:28,485 | INFO     | number of running child processes to parent process 4166505: 1
[2026-02-01 12:44:42] 2026-02-01 11:37:28,485 | INFO     | maximum number of monitored processes: 6
[2026-02-01 12:44:42] 2026-02-01 11:37:28,485 | INFO     | aborting job monitoring since job object (job id=6994860811) has expired
[2026-02-01 12:44:42] 2026-02-01 11:37:28,979 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 12:44:42] 2026-02-01 11:37:28,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 12:44:42] 2026-02-01 11:37:29,021 | INFO     | did not find any defunct processes belonging to 4166505
[2026-02-01 12:44:42] 2026-02-01 11:37:29,089 | INFO     | did not find any defunct processes belonging to 4166505
[2026-02-01 12:44:42] 2026-02-01 11:37:29,089 | INFO     | ready for new job
[2026-02-01 12:44:42] 2026-02-01 11:37:29,089 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 12:44:42] 2026-02-01 11:37:29,091 | INFO     | **************************************
[2026-02-01 12:44:42] 2026-02-01 11:37:29,091 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 12:44:42] 2026-02-01 11:37:29,091 | INFO     | **************************************
[2026-02-01 12:44:42] 2026-02-01 11:37:29,091 | INFO     | 
[2026-02-01 12:44:42] 2026-02-01 11:37:29,102 | INFO     | architecture information:
[2026-02-01 12:44:42] 2026-02-01 11:37:29,105 | INFO     | executing command: cat /etc/os-release
[2026-02-01 12:44:42] 2026-02-01 11:37:29,208 | INFO     | cat /etc/os-release:
[2026-02-01 12:44:42] NAME="CentOS Linux"
[2026-02-01 12:44:42] VERSION="7 (Core)"
[2026-02-01 12:44:42] ID="centos"
[2026-02-01 12:44:42] ID_LIKE="rhel fedora"
[2026-02-01 12:44:42] VERSION_ID="7"
[2026-02-01 12:44:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 12:44:42] ANSI_COLOR="0;31"
[2026-02-01 12:44:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 12:44:42] HOME_URL="https://www.centos.org/"
[2026-02-01 12:44:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 12:44:42] 
[2026-02-01 12:44:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 12:44:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 12:44:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 12:44:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 12:44:42] 
[2026-02-01 12:44:42] 2026-02-01 11:37:29,208 | INFO     | **************************************
[2026-02-01 12:44:42] 2026-02-01 11:37:29,712 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2026-02-01 12:44:42] 2026-02-01 11:37:29,855 | INFO     | sufficient remaining disk space (1061726191616 B)
[2026-02-01 12:44:42] 2026-02-01 11:37:29,855 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 12:44:42] 2026-02-01 11:37:29,855 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 12:44:42] 2026-02-01 11:37:29,855 | INFO     | update_server=False
[2026-02-01 12:44:42] 2026-02-01 11:37:29,855 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 12:44:42] 2026-02-01 11:37:29,856 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 12:44:42] 2026-02-01 11:37:29,856 | INFO     | aborting loop
[2026-02-01 12:44:42] 2026-02-01 11:37:29,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 12:44:42] 2026-02-01 11:37:30,125 | INFO     | all data control threads have been joined
[2026-02-01 12:44:42] 2026-02-01 11:37:30,231 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 12:44:42] 2026-02-01 11:37:30,253 | INFO     | all payload control threads have been joined
[2026-02-01 12:44:42] 2026-02-01 11:37:30,337 | INFO     | all job control threads have been joined
[2026-02-01 12:44:42] 2026-02-01 11:37:30,864 | INFO     | [job] queue monitor thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:30,864 | INFO     | [job] retrieve thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:30,865 | INFO     | [job] job monitor thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,090 | INFO     | [payload] validate_post thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,105 | INFO     | [data] copytool_in thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,133 | INFO     | [data] control thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,258 | INFO     | [payload] control thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,279 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,290 | INFO     | [payload] failed_post thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,342 | INFO     | [job] control thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,687 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,772 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:31,849 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:32,237 | INFO     | [data] copytool_out thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:32,255 | INFO     | [job] validate thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:32,566 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 12:44:42] 2026-02-01 11:37:33,418 | INFO     | [monitor] cgroup control has ended
[2026-02-01 12:44:42] 2026-02-01 11:37:36,579 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 12:44:42] 2026-02-01 11:37:36,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644054591296)>', '<ExcThread(monitor, started 139643706124032)>']
[2026-02-01 12:44:42] 2026-02-01 11:37:41,962 | INFO     | all workflow threads have been joined
[2026-02-01 12:44:42] 2026-02-01 11:37:41,963 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 12:44:42] 2026-02-01 11:37:41,963 | INFO     | traces error code: 0
[2026-02-01 12:44:42] 2026-02-01 11:37:41,963 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 12:44:42] 2026-02-01 11:37:57,888 | INFO     | PID=4146686 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-01 12:44:42] 2026-02-01 11:37:57,888 | INFO     | .. there are 73 such processes running
[2026-02-01 12:44:42] 2026-02-01 11:37:57,888 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 12:44:42] 2026-02-01 11:37:57,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 12:44:42] 2026-02-01 11:37:57,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 12:44:42] 2026-02-01 11:37:57,889 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 12:44:42] 2026-02-01 11:37:57,889 | INFO     | [monitor] control thread has ended
[2026-02-01 12:44:42] 2026-02-01 11:37:58,508 [wrapper] ==== pilot stdout END ====
[2026-02-01 12:44:42] 2026-02-01 11:37:58,522 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 12:44:42] 2026-02-01 11:37:58,538 [wrapper] pilotpid: 4146686
[2026-02-01 12:44:42] 2026-02-01 11:37:58,579 [wrapper] Pilot exit status: 0
[2026-02-01 12:44:42] 2026-02-01 11:37:58,747 [wrapper] pandaids: 6994860811
[2026-02-01 12:44:42] 2026-02-01 11:37:59,037 [wrapper] cleanup supervisor_pilot  430152 4146687
[2026-02-01 12:44:42] 2026-02-01 11:37:59,066 [wrapper] Test setup, not cleaning
[2026-02-01 12:44:42] 2026-02-01 11:37:59,089 [wrapper] apfmon messages muted
[2026-02-01 12:44:42] 2026-02-01 11:37:59,118 [wrapper] ==== wrapper stdout END ====
[2026-02-01 12:44:42] 2026-02-01 11:37:59,153 [wrapper] ==== wrapper stderr END ====
[2026-02-01 12:44:42]  *** Error codes and diagnostics ***
[2026-02-01 12:44:42]     "exeErrorCode": 0,
[2026-02-01 12:44:42]     "exeErrorDiag": "",
[2026-02-01 12:44:42]     "pilotErrorCode": 0,
[2026-02-01 12:44:42]     "pilotErrorDiag": "",
[2026-02-01 12:44:42]  *** Listing of results directory ***
[2026-02-01 12:44:42] total 672320
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc    584422 Jan 31 17:04 pilot3.tar.gz
[2026-02-01 12:44:42] -rwx------ 1 boinc boinc     36322 Jan 31 17:05 runpilot2-wrapper.sh
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc      5111 Jan 31 17:06 queuedata.json
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc       100 Feb  1 10:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 12:44:42] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 10:24 run_atlas
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc       105 Feb  1 10:24 job.xml
[2026-02-01 12:44:42] -rw-r--r-- 2 boinc boinc 492398614 Feb  1 10:24 EVNT.48317889._000066.pool.root.1
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc      6676 Feb  1 10:24 init_data.xml
[2026-02-01 12:44:42] drwxrwx--x 2 boinc boinc      4096 Feb  1 10:24 shared
[2026-02-01 12:44:42] -rw-r--r-- 2 boinc boinc    597750 Feb  1 10:24 input.tar.gz
[2026-02-01 12:44:42] -rw-r--r-- 2 boinc boinc     15845 Feb  1 10:24 start_atlas.sh
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc         0 Feb  1 10:24 boinc_lockfile
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc      2519 Feb  1 10:24 pandaJob.out
[2026-02-01 12:44:42] -rw------- 1 boinc boinc   1010520 Feb  1 10:25 agis_schedconf.cvmfs.json
[2026-02-01 12:44:42] -rw------- 1 boinc boinc   1511668 Feb  1 10:25 agis_ddmendpoints.agis.ALL.json
[2026-02-01 12:44:42] -rw------- 1 boinc boinc       435 Feb  1 10:26 workernode_map.json
[2026-02-01 12:44:42] drwx------ 5 boinc boinc      4096 Feb  1 10:26 pilot3
[2026-02-01 12:44:42] -rw------- 1 boinc boinc 189165464 Feb  1 12:36 HITS.48317892._003421.pool.root.1
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc       530 Feb  1 12:36 boinc_task_state.xml
[2026-02-01 12:44:42] -rw------- 1 boinc boinc        95 Feb  1 12:37 pilot_heartbeat.json
[2026-02-01 12:44:42] -rw------- 1 boinc boinc      1028 Feb  1 12:37 memory_monitor_summary.json
[2026-02-01 12:44:42] -rw------- 1 boinc boinc    415965 Feb  1 12:37 log.48317892._003421.job.log.tgz.1
[2026-02-01 12:44:42] -rw------- 1 boinc boinc      6346 Feb  1 12:37 heartbeat.json
[2026-02-01 12:44:42] -rw------- 1 boinc boinc       824 Feb  1 12:37 pilotlog.txt
[2026-02-01 12:44:42] -rw------- 1 boinc boinc   1064031 Feb  1 12:37 log.48317892._003421.job.log.1
[2026-02-01 12:44:42] -rw------- 1 boinc boinc       357 Feb  1 12:37 output.list
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc       620 Feb  1 12:37 runtime_log
[2026-02-01 12:44:42] -rw------- 1 boinc boinc   1495040 Feb  1 12:37 result.tar.gz
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc      8879 Feb  1 12:37 runtime_log.err
[2026-02-01 12:44:42] -rw------- 1 boinc boinc       664 Feb  1 12:37 3nAMDmKeS68n9Rq4apOajLDm4fhM0noT9bVooX4SDmMzNKDmvex7Ho.diag
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc        26 Feb  1 12:44 wrapper_checkpoint.txt
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc      8192 Feb  1 12:44 boinc_mmap_file
[2026-02-01 12:44:42] -rw-r--r-- 1 boinc boinc     21550 Feb  1 12:44 stderr.txt
[2026-02-01 12:44:43] HITS file was successfully produced:
[2026-02-01 12:44:43] -rw------- 1 boinc boinc 189165464 Feb  1 12:36 shared/HITS.pool.root.1
[2026-02-01 12:44:43]  *** Contents of shared directory: ***
[2026-02-01 12:44:43] total 667660
[2026-02-01 12:44:43] -rw-r--r-- 2 boinc boinc 492398614 Feb  1 10:24 ATLAS.root_0
[2026-02-01 12:44:43] -rw-r--r-- 2 boinc boinc    597750 Feb  1 10:24 input.tar.gz
[2026-02-01 12:44:43] -rw-r--r-- 2 boinc boinc     15845 Feb  1 10:24 start_atlas.sh
[2026-02-01 12:44:43] -rw------- 1 boinc boinc 189165464 Feb  1 12:36 HITS.pool.root.1
[2026-02-01 12:44:43] -rw------- 1 boinc boinc   1495040 Feb  1 12:37 result.tar.gz
12:44:45 (4134230): run_atlas exited; CPU time 44499.912708
12:44:45 (4134230): called boinc_finish(0)

</stderr_txt>
]]>

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