Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:57:02 (2401515): wrapper (7.7.26015): starting
15:57:02 (2401515): wrapper: running run_atlas (--nthreads 8)
[2026-01-31 15:57:02] Arguments: --nthreads 8
[2026-01-31 15:57:02] Threads: 8
[2026-01-31 15:57:02] Checking for CVMFS
[2026-01-31 15:57:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 15:57:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 15:57:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 15:57:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 15:57:03] 2.13.3.0 16090 125550 442388 155726 3 720 29792399 32935937 30143 16776704 0 1289301288 99.560 1472273058 52746 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-31 15:57:03] CVMFS is ok
[2026-01-31 15:57:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 15:57:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 15:57:03] Further information can be found at the LHC@home message board.
[2026-01-31 15:57:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 15:57:03] Checking for apptainer binary...
[2026-01-31 15:57:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 15:57:03] Running /usr/bin/apptainer --version
[2026-01-31 15:57:03] apptainer version 1.4.5-2.el9
[2026-01-31 15:57:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 15:57:04] c7-9-15.aglt2.org
[2026-01-31 15:57:04] apptainer works
[2026-01-31 15:57:04] Set ATHENA_PROC_NUMBER=8
[2026-01-31 15:57:04] Set ATHENA_CORE_NUMBER=8
[2026-01-31 15:57:04] Starting ATLAS job with PandaID=6994681268
[2026-01-31 15:57:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 17:18:08]  *** The last 200 lines of the pilot log: ***
[2026-01-31 17:18:08]  filetype=log
[2026-01-31 17:18:08]  guid=75d69e56-69bb-49d0-82bb-63dcbec04101
[2026-01-31 17:18:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-31 17:18:08]  is_altstaged=None
[2026-01-31 17:18:08]  is_tar=False
[2026-01-31 17:18:08]  lfn=log.48310589._009134.job.log.tgz.1
[2026-01-31 17:18:08]  mtime=0
[2026-01-31 17:18:08]  protocol_id=None
[2026-01-31 17:18:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-31 17:18:08]  replicas=None
[2026-01-31 17:18:08]  scope=mc23_13p6TeV
[2026-01-31 17:18:08]  status=None
[2026-01-31 17:18:08]  status_code=0
[2026-01-31 17:18:08]  storage_token=
[2026-01-31 17:18:08]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6994681268/log.48310589._009134.job.log.tgz.1
[2026-01-31 17:18:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/09/log.48310589._009134.job.log.tgz.1
[2026-01-31 17:18:08]  workdir=None
[2026-01-31 17:18:08] ]
[2026-01-31 17:18:08] 2026-01-31 22:17:30,843 | INFO     | transferring file log.48310589._009134.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6994681268/log.48310589._009134.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-31 17:18:08] 2026-01-31 22:17:30,844 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6994681268/log.48310589._009134.job.log.tgz.1 /tmp/boinchome/slots/1/log.48310589._009134.job
[2026-01-31 17:18:08] 2026-01-31 22:17:30,984 | INFO     | adding to output.list: log.48310589._009134.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/09/log.48310589._009134.job.log.tg
[2026-01-31 17:18:08] 2026-01-31 22:17:30,985 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-31 17:18:08] 2026-01-31 22:17:30,985 | INFO     | summary of transferred files:
[2026-01-31 17:18:08] 2026-01-31 22:17:30,985 | INFO     |  -- lfn=log.48310589._009134.job.log.tgz.1, status_code=0, status=transferred
[2026-01-31 17:18:08] 2026-01-31 22:17:30,985 | INFO     | stage-out finished correctly
[2026-01-31 17:18:08] 2026-01-31 22:17:31,876 | WARNING  | process 2416463 can no longer be monitored (due to stat problems) - aborting
[2026-01-31 17:18:08] 2026-01-31 22:17:31,877 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6994681268/memory_monitor_summary.json (trf name=prmon)
[2026-01-31 17:18:08] 2026-01-31 22:17:31,892 | INFO     | time since job start (4720s) is within the limit (349056.0s)
[2026-01-31 17:18:08] 2026-01-31 22:17:32,605 | INFO     | number of running child processes to parent process 2416463: 1
[2026-01-31 17:18:08] 2026-01-31 22:17:32,605 | INFO     | maximum number of monitored processes: 6
[2026-01-31 17:18:08] 2026-01-31 22:17:32,941 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-31 17:18:08] 2026-01-31 22:17:33,091 | INFO     | job 6994681268 has state=finished
[2026-01-31 17:18:08] 2026-01-31 22:17:33,091 | INFO     | preparing for final server update for job 6994681268 in state='finished'
[2026-01-31 17:18:08] 2026-01-31 22:17:33,091 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-6994681268/jobReport.json
[2026-01-31 17:18:08] 2026-01-31 22:17:33,095 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-01-31 17:18:08] 2026-01-31 22:17:33,095 | INFO     | this job has now completed (state=finished)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,095 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,095 | INFO     | log transfer has been attempted: DONE
[2026-01-31 17:18:08] 2026-01-31 22:17:33,095 | INFO     | job 6994681268 has finished - writing final server update
[2026-01-31 17:18:08] 2026-01-31 22:17:33,095 | INFO     | total number of processed events: 400 (read)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,117 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6994681268/memory_monitor_summary.json (trf name=prmon)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,117 | INFO     | extracted standard info from prmon json
[2026-01-31 17:18:08] 2026-01-31 22:17:33,117 | INFO     | extracted standard memory fields from prmon json
[2026-01-31 17:18:08] 2026-01-31 22:17:33,117 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-31 17:18:08] 2026-01-31 22:17:33,118 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-31 17:18:08] 2026-01-31 22:17:33,118 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | fitting pss+swap vs Time
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | sum of square deviations: 101835841.94202887
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | sum of deviations: 10789382.95652179
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | mean x: 1769895602.0289855
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | mean y: 2514985.5217391304
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | intersect: -185003289.76511967
[2026-01-31 17:18:08] 2026-01-31 22:17:33,119 | INFO     | chi2: 0.01829253956134692
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | current memory leak: 0.11 B/s (using 69 data points, chi2=0.02)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | could have reported an average CPU frequency of 3787 MHz (6 samples)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | ..............................
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . Timing measurements:
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . get job = 0 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . initial setup = 35 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . payload setup = 55 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . stage-in = 0 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . payload execution = 4644 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . stage-out = 2 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | . log creation = 0 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,120 | INFO     | ..............................
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | 
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | job summary report
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | --------------------------------------------------
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | PanDA job id: 6994681268
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | task id: 48310589
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | errors: (none)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | pilot state: finished 
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | transexitcode: 0
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | exeerrorcode: 0
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | exeerrordiag: 
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | exitcode: 0
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | exitmsg: OK
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | cpuconsumptiontime: 21346 s
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | nevents: 400
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | neventsw: 0
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | pid: 2416463
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | pgrp: 2416463
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | corecount: 8
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | event service: False
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | sizes: {0: 2277790, 1: 2278247, 2: 2278307, 12: 2278335, 4703: 2304575, 4704: 2304574, 4707: 2313756, 4709: 2314006}
[2026-01-31 17:18:08] 2026-01-31 22:17:33,169 | INFO     | --------------------------------------------------
[2026-01-31 17:18:08] 2026-01-31 22:17:33,170 | INFO     | 
[2026-01-31 17:18:08] 2026-01-31 22:17:33,170 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-31 17:18:08] 2026-01-31 22:17:33,288 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,290 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 17:18:08] 2026-01-31 22:17:33,290 | INFO     | job 6994681268 has completed (purged errors)
[2026-01-31 17:18:08] 2026-01-31 22:17:33,290 | INFO     | overall cleanup function is called
[2026-01-31 17:18:08] 2026-01-31 22:17:34,298 | INFO     | --- collectZombieJob: --- 10, [2416463]
[2026-01-31 17:18:08] 2026-01-31 22:17:34,298 | INFO     | zombie collector waiting for pid 2416463
[2026-01-31 17:18:08] 2026-01-31 22:17:34,299 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 17:18:08] 2026-01-31 22:17:34,299 | INFO     | collected zombie processes
[2026-01-31 17:18:08] 2026-01-31 22:17:34,299 | INFO     | will attempt to kill all subprocesses of pid=2416463
[2026-01-31 17:18:08] 2026-01-31 22:17:35,053 | INFO     | process IDs to be killed: [2416463] (in reverse order)
[2026-01-31 17:18:08] 2026-01-31 22:17:35,555 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 17:18:08] 2026-01-31 22:17:35,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 17:18:08] 2026-01-31 22:17:35,637 | INFO     | did not find any defunct processes belonging to 2416463
[2026-01-31 17:18:08] 2026-01-31 22:17:35,731 | INFO     | did not find any defunct processes belonging to 2416463
[2026-01-31 17:18:08] 2026-01-31 22:17:35,731 | INFO     | ready for new job
[2026-01-31 17:18:08] 2026-01-31 22:17:35,731 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 17:18:08] 2026-01-31 22:17:35,732 | INFO     | **************************************
[2026-01-31 17:18:08] 2026-01-31 22:17:35,733 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 17:18:08] 2026-01-31 22:17:35,733 | INFO     | **************************************
[2026-01-31 17:18:08] 2026-01-31 22:17:35,733 | INFO     | 
[2026-01-31 17:18:08] 2026-01-31 22:17:35,759 | INFO     | architecture information:
[2026-01-31 17:18:08] 2026-01-31 22:17:35,769 | INFO     | executing command: cat /etc/os-release
[2026-01-31 17:18:08] 2026-01-31 22:17:35,901 | INFO     | cat /etc/os-release:
[2026-01-31 17:18:08] NAME="CentOS Linux"
[2026-01-31 17:18:08] VERSION="7 (Core)"
[2026-01-31 17:18:08] ID="centos"
[2026-01-31 17:18:08] ID_LIKE="rhel fedora"
[2026-01-31 17:18:08] VERSION_ID="7"
[2026-01-31 17:18:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 17:18:08] ANSI_COLOR="0;31"
[2026-01-31 17:18:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 17:18:08] HOME_URL="https://www.centos.org/"
[2026-01-31 17:18:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 17:18:08] 
[2026-01-31 17:18:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 17:18:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 17:18:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 17:18:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 17:18:08] 
[2026-01-31 17:18:08] 2026-01-31 22:17:35,902 | INFO     | **************************************
[2026-01-31 17:18:08] 2026-01-31 22:17:36,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | INFO     | sufficient remaining disk space (69929533440 B)
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | INFO     | update_server=False
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:18:08] 2026-01-31 22:17:36,517 | INFO     | aborting loop
[2026-01-31 17:18:08] 2026-01-31 22:17:36,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 17:18:08] 2026-01-31 22:17:37,459 | INFO     | all data control threads have been joined
[2026-01-31 17:18:08] 2026-01-31 22:17:37,523 | INFO     | [job] retrieve thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:37,524 | INFO     | [job] job monitor thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:37,538 | INFO     | all job control threads have been joined
[2026-01-31 17:18:08] 2026-01-31 22:17:37,638 | INFO     | all payload control threads have been joined
[2026-01-31 17:18:08] 2026-01-31 22:17:37,639 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:37,828 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,129 | INFO     | [job] validate thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,190 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:18:08] 2026-01-31 22:17:38,405 | INFO     | [payload] validate_post thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,465 | INFO     | [data] control thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,505 | INFO     | [payload] failed_post thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,544 | INFO     | [job] control thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,644 | INFO     | [payload] control thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,805 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,833 | INFO     | [data] copytool_out thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,834 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:38,834 | INFO     | [data] copytool_in thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:39,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 17:18:08] 2026-01-31 22:17:39,196 | INFO     | [job] queue monitor thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:43,147 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 17:18:08] 2026-01-31 22:17:58,750 | INFO     | [monitor] cgroup control has ended
[2026-01-31 17:18:08] 2026-01-31 22:17:59,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860965467968)>', '<ExcThread(monitor, started 139860601972480)>']
[2026-01-31 17:18:08] 2026-01-31 22:18:04,810 | INFO     | all workflow threads have been joined
[2026-01-31 17:18:08] 2026-01-31 22:18:04,810 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 17:18:08] 2026-01-31 22:18:04,811 | INFO     | traces error code: 0
[2026-01-31 17:18:08] 2026-01-31 22:18:04,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 17:18:08] 2026-01-31 22:18:06,527 | INFO     | PID=2407171 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-31 17:18:08] 2026-01-31 22:18:06,527 | INFO     | .. there are 29 such processes running
[2026-01-31 17:18:08] 2026-01-31 22:18:06,528 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 17:18:08] 2026-01-31 22:18:06,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 17:18:08] 2026-01-31 22:18:06,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 17:18:08] 2026-01-31 22:18:06,528 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 17:18:08] 2026-01-31 22:18:06,528 | INFO     | [monitor] control thread has ended
[2026-01-31 17:18:08] 2026-01-31 22:18:06,887 [wrapper] ==== pilot stdout END ====
[2026-01-31 17:18:08] 2026-01-31 22:18:06,919 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 17:18:08] 2026-01-31 22:18:06,949 [wrapper] pilotpid: 2407171
[2026-01-31 17:18:08] 2026-01-31 22:18:06,987 [wrapper] Pilot exit status: 0
[2026-01-31 17:18:08] 2026-01-31 22:18:07,214 [wrapper] pandaids: 6994681268
[2026-01-31 17:18:08] 2026-01-31 22:18:07,733 [wrapper] cleanup supervisor_pilot 2832959 2407172
[2026-01-31 17:18:08] 2026-01-31 22:18:07,775 [wrapper] Test setup, not cleaning
[2026-01-31 17:18:08] 2026-01-31 22:18:07,816 [wrapper] apfmon messages muted
[2026-01-31 17:18:08] 2026-01-31 22:18:07,857 [wrapper] ==== wrapper stdout END ====
[2026-01-31 17:18:08] 2026-01-31 22:18:07,901 [wrapper] ==== wrapper stderr END ====
[2026-01-31 17:18:08]  *** Error codes and diagnostics ***
[2026-01-31 17:18:08]     "exeErrorCode": 0,
[2026-01-31 17:18:08]     "exeErrorDiag": "",
[2026-01-31 17:18:08]     "pilotErrorCode": 0,
[2026-01-31 17:18:08]     "pilotErrorDiag": "",
[2026-01-31 17:18:08]  *** Listing of results directory ***
[2026-01-31 17:18:08] total 668408
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas    584422 Jan 31 08:56 pilot3.tar.gz
[2026-01-31 17:18:08] -rwx------. 1 boincer umatlas     36322 Jan 31 08:57 runpilot2-wrapper.sh
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas      5111 Jan 31 08:59 queuedata.json
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas       100 Jan 31 15:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 17:18:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 31 15:57 run_atlas
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas       105 Jan 31 15:57 job.xml
[2026-01-31 17:18:08] -rw-r--r--. 2 boincer umatlas 496519472 Jan 31 15:57 EVNT.48310585._000175.pool.root.1
[2026-01-31 17:18:08] -rw-r--r--. 2 boincer umatlas     15845 Jan 31 15:57 start_atlas.sh
[2026-01-31 17:18:08] drwxrwx--x. 2 boincer umatlas      4096 Jan 31 15:57 shared
[2026-01-31 17:18:08] -rw-r--r--. 2 boincer umatlas    597761 Jan 31 15:57 input.tar.gz
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas         0 Jan 31 15:57 boinc_lockfile
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas      2529 Jan 31 15:57 pandaJob.out
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas        57 Jan 31 15:57 setup.sh.local
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas   1010528 Jan 31 15:58 agis_schedconf.cvmfs.json
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas   1511668 Jan 31 15:58 agis_ddmendpoints.agis.ALL.json
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas       431 Jan 31 15:58 workernode_map.json
[2026-01-31 17:18:08] drwx------. 5 boincer umatlas      4096 Jan 31 15:58 pilot3
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas      7171 Jan 31 17:12 init_data.xml
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas 181928542 Jan 31 17:16 HITS.48310589._009134.pool.root.1
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas       530 Jan 31 17:16 boinc_task_state.xml
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas      1035 Jan 31 17:17 memory_monitor_summary.json
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas    364830 Jan 31 17:17 log.48310589._009134.job.log.tgz.1
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas      6331 Jan 31 17:17 heartbeat.json
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas        27 Jan 31 17:18 wrapper_checkpoint.txt
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas       823 Jan 31 17:18 pilotlog.txt
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas        95 Jan 31 17:18 pilot_heartbeat.json
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas      8192 Jan 31 17:18 boinc_mmap_file
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas    666602 Jan 31 17:18 log.48310589._009134.job.log.1
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas       357 Jan 31 17:18 output.list
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas       620 Jan 31 17:18 runtime_log
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas   1044480 Jan 31 17:18 result.tar.gz
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas      9336 Jan 31 17:18 runtime_log.err
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas       651 Jan 31 17:18 pHQODm2eQ68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDms5NKDmreluWn.diag
[2026-01-31 17:18:08] -rw-r--r--. 1 boincer umatlas     21364 Jan 31 17:18 stderr.txt
[2026-01-31 17:18:08] HITS file was successfully produced:
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas 181928542 Jan 31 17:16 shared/HITS.pool.root.1
[2026-01-31 17:18:08]  *** Contents of shared directory: ***
[2026-01-31 17:18:08] total 664180
[2026-01-31 17:18:08] -rw-r--r--. 2 boincer umatlas 496519472 Jan 31 15:57 ATLAS.root_0
[2026-01-31 17:18:08] -rw-r--r--. 2 boincer umatlas     15845 Jan 31 15:57 start_atlas.sh
[2026-01-31 17:18:08] -rw-r--r--. 2 boincer umatlas    597761 Jan 31 15:57 input.tar.gz
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas 181928542 Jan 31 17:16 HITS.pool.root.1
[2026-01-31 17:18:08] -rw-------. 1 boincer umatlas   1044480 Jan 31 17:18 result.tar.gz
17:18:10 (2401515): run_atlas exited; CPU time 21447.724114
17:18:10 (2401515): called boinc_finish(0)

</stderr_txt>
]]>

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