Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:08:48 (1084685): wrapper (7.7.26015): starting
17:08:48 (1084685): wrapper: running run_atlas (--nthreads 9)
[2026-01-31 17:08:49] Arguments: --nthreads 9
[2026-01-31 17:08:49] Threads: 9
[2026-01-31 17:08:49] Checking for CVMFS
[2026-01-31 17:08:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 17:08:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 17:08:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 17:08:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 17:08:49] 2.13.3.0 12977 125668 643608 155727 3 901 22679096 32935936 25143 16776704 0 521280664 99.540 643128966 33919 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-31 17:08:49] CVMFS is ok
[2026-01-31 17:08:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 17:08:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 17:08:49] Further information can be found at the LHC@home message board.
[2026-01-31 17:08:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 17:08:49] Checking for apptainer binary...
[2026-01-31 17:08:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 17:08:49] Running /usr/bin/apptainer --version
[2026-01-31 17:08:49] apptainer version 1.4.5-2.el9
[2026-01-31 17:08:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 17:08:50] c6-12-29-1.aglt2.org
[2026-01-31 17:08:50] apptainer works
[2026-01-31 17:08:50] Set ATHENA_PROC_NUMBER=9
[2026-01-31 17:08:50] Set ATHENA_CORE_NUMBER=9
[2026-01-31 17:08:50] Starting ATLAS job with PandaID=6994681036
[2026-01-31 17:08:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:40:04 (1084685): BOINC client no longer exists - exiting
17:40:04 (1084685): timer handler: client dead, exiting
17:47:34 (1234600): wrapper (7.7.26015): starting
17:47:34 (1234600): wrapper: running run_atlas (--nthreads 9)
[2026-01-31 17:47:34] Arguments: --nthreads 9
[2026-01-31 17:47:34] Threads: 9
[2026-01-31 17:47:34] This job has been restarted, cleaning up previous attempt
[2026-01-31 17:47:34] Checking for CVMFS
[2026-01-31 17:47:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 17:47:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 17:47:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 17:47:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 17:47:35] 2.13.3.0 12977 125707 636224 155729 1 925 24583043 32935937 20678 16776704 0 521535639 99.540 643751726 33912 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-31 17:47:35] CVMFS is ok
[2026-01-31 17:47:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 17:47:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 17:47:35] Further information can be found at the LHC@home message board.
[2026-01-31 17:47:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 17:47:35] Checking for apptainer binary...
[2026-01-31 17:47:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 17:47:35] Running /usr/bin/apptainer --version
[2026-01-31 17:47:35] apptainer version 1.4.5-2.el9
[2026-01-31 17:47:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 17:47:35] c6-12-29-1.aglt2.org
[2026-01-31 17:47:35] apptainer works
[2026-01-31 17:47:35] Set ATHENA_PROC_NUMBER=9
[2026-01-31 17:47:35] Set ATHENA_CORE_NUMBER=9
[2026-01-31 17:47:35] Starting ATLAS job with PandaID=6994681036
[2026-01-31 17:47:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 03:48:55]  *** The last 200 lines of the pilot log: ***
[2026-02-01 03:48:56] 2026-02-01 06:12:39,750 | INFO     | log transfer has been attempted: DONE
[2026-02-01 03:48:56] 2026-02-01 06:12:39,750 | INFO     | job 6994681036 has finished - writing final server update
[2026-02-01 03:48:56] 2026-02-01 06:12:39,766 | INFO     | total number of processed events: 400 (read)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,772 | INFO     | time since job start (26692s) is within the limit (349056.0s)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,864 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6994681036/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,884 | INFO     | extracted standard info from prmon json
[2026-02-01 03:48:56] 2026-02-01 06:12:39,885 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 03:48:56] 2026-02-01 06:12:39,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 03:48:56] 2026-02-01 06:12:39,885 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 03:48:56] 2026-02-01 06:12:39,885 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 03:48:56] 2026-02-01 06:12:39,893 | INFO     | fitting pss+swap vs Time
[2026-02-01 03:48:56] 2026-02-01 06:12:39,894 | INFO     | sum of square deviations: 25877473558.87394
[2026-02-01 03:48:56] 2026-02-01 06:12:39,898 | INFO     | sum of deviations: -38132922831.617905
[2026-02-01 03:48:56] 2026-02-01 06:12:39,899 | INFO     | mean x: 1769912987.361556
[2026-02-01 03:48:56] 2026-02-01 06:12:39,899 | INFO     | mean y: 2505549.3203661325
[2026-02-01 03:48:56] 2026-02-01 06:12:39,899 | INFO     | intersect: 2610640969.193768
[2026-02-01 03:48:56] 2026-02-01 06:12:39,900 | INFO     | chi2: 4.631938156294769
[2026-02-01 03:48:56] 2026-02-01 06:12:39,900 | INFO     | sum of square deviations: 24999402958.213184
[2026-02-01 03:48:56] 2026-02-01 06:12:39,905 | INFO     | sum of deviations: 80009745351.963
[2026-02-01 03:48:56] 2026-02-01 06:12:39,905 | INFO     | mean x: 1769912834.8657408
[2026-02-01 03:48:56] 2026-02-01 06:12:39,905 | INFO     | mean y: 2526023.2407407407
[2026-02-01 03:48:56] 2026-02-01 06:12:39,905 | INFO     | intersect: -5662020264.1038885
[2026-02-01 03:48:56] 2026-02-01 06:12:39,906 | INFO     | chi2: 1.4213965482450952
[2026-02-01 03:48:56] 2026-02-01 06:12:39,906 | INFO     | current chi2=1.4213965482450952 (change=69.31313630961527 %)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,906 | INFO     | sum of square deviations: 24141373175.007114
[2026-02-01 03:48:56] 2026-02-01 06:12:39,911 | INFO     | sum of deviations: 78881233843.33955
[2026-02-01 03:48:56] 2026-02-01 06:12:39,911 | INFO     | mean x: 1769912682.3653395
[2026-02-01 03:48:56] 2026-02-01 06:12:39,911 | INFO     | mean y: 2525822.658079625
[2026-02-01 03:48:56] 2026-02-01 06:12:39,911 | INFO     | intersect: -5780612326.438178
[2026-02-01 03:48:56] 2026-02-01 06:12:39,912 | INFO     | chi2: 1.421545998507863
[2026-02-01 03:48:56] 2026-02-01 06:12:39,912 | INFO     | current chi2=1.421545998507863 (change=-0.01051432571383463 %)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,912 | INFO     | right removable region: 426
[2026-02-01 03:48:56] 2026-02-01 06:12:39,913 | INFO     | sum of square deviations: 24999306578.213203
[2026-02-01 03:48:56] 2026-02-01 06:12:39,917 | INFO     | sum of deviations: -106675966235.43983
[2026-02-01 03:48:56] 2026-02-01 06:12:39,917 | INFO     | mean x: 1769913139.8657408
[2026-02-01 03:48:56] 2026-02-01 06:12:39,917 | INFO     | mean y: 2517396.733796296
[2026-02-01 03:48:56] 2026-02-01 06:12:39,917 | INFO     | intersect: 7555014653.298656
[2026-02-01 03:48:56] 2026-02-01 06:12:39,918 | INFO     | chi2: 3.273278514982936
[2026-02-01 03:48:56] 2026-02-01 06:12:39,918 | INFO     | current chi2=3.273278514982936 (change=29.332421881873028 %)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,919 | INFO     | sum of square deviations: 24141232997.536278
[2026-02-01 03:48:56] 2026-02-01 06:12:39,923 | INFO     | sum of deviations: -103997114467.66743
[2026-02-01 03:48:56] 2026-02-01 06:12:39,923 | INFO     | mean x: 1769913292.3700235
[2026-02-01 03:48:56] 2026-02-01 06:12:39,923 | INFO     | mean y: 2516916.7447306793
[2026-02-01 03:48:56] 2026-02-01 06:12:39,924 | INFO     | intersect: 7627060173.637874
[2026-02-01 03:48:56] 2026-02-01 06:12:39,924 | INFO     | chi2: 3.2715095479939262
[2026-02-01 03:48:56] 2026-02-01 06:12:39,924 | INFO     | current chi2=3.2715095479939262 (change=0.05404266642489448 %)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,924 | INFO     | left removable region: 20
[2026-02-01 03:48:56] 2026-02-01 06:12:39,925 | INFO     | sum of square deviations: 20751632360.3251
[2026-02-01 03:48:56] 2026-02-01 06:12:39,929 | INFO     | sum of deviations: 21824753601.70934
[2026-02-01 03:48:56] 2026-02-01 06:12:39,929 | INFO     | mean x: 1769913261.8817735
[2026-02-01 03:48:56] 2026-02-01 06:12:39,929 | INFO     | mean y: 2535988.0147783253
[2026-02-01 03:48:56] 2026-02-01 06:12:39,929 | INFO     | intersect: -1858904122.6350138
[2026-02-01 03:48:56] 2026-02-01 06:12:39,930 | INFO     | chi2: 0.009990440513293276
[2026-02-01 03:48:56] 2026-02-01 06:12:39,930 | INFO     | current memory leak: 1.05 B/s (using 406 data points, chi2=0.01)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | could have reported an average CPU frequency of 2526 MHz (18 samples)
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | ..............................
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . Timing measurements:
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . get job = 0 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . initial setup = 1 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . payload setup = 5 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . stage-in = 0 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . payload execution = 26660 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,931 | INFO     | . stage-out = 5 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,932 | INFO     | . log creation = 0 s
[2026-02-01 03:48:56] 2026-02-01 06:12:39,932 | INFO     | ..............................
[2026-02-01 03:48:56] 2026-02-01 06:12:40,468 | INFO     | 
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | job summary report
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | --------------------------------------------------
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | PanDA job id: 6994681036
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | task id: 48310589
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | errors: (none)
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | pilot state: finished 
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | transexitcode: 0
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | exeerrorcode: 0
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | exeerrordiag: 
[2026-02-01 03:48:56] 2026-02-01 06:12:40,469 | INFO     | exitcode: 0
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | exitmsg: OK
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | cpuconsumptiontime: 42843 s
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | nevents: 400
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | neventsw: 0
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | pid: 1259021
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | pgrp: 1259021
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | corecount: 9
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | event service: False
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | sizes: {0: 2278279, 11: 2278279, 26670: 2314830, 26677: 2323828, 26679: 2323884, 26681: 2324106}
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | --------------------------------------------------
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | 
[2026-02-01 03:48:56] 2026-02-01 06:12:40,470 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 03:48:56] 2026-02-01 06:12:40,531 | INFO     | job 6994681036 has completed (purged errors)
[2026-02-01 03:48:56] 2026-02-01 06:12:40,532 | INFO     | overall cleanup function is called
[2026-02-01 03:48:56] 2026-02-01 06:12:41,544 | INFO     | --- collectZombieJob: --- 10, [1259021]
[2026-02-01 03:48:56] 2026-02-01 06:12:41,545 | INFO     | zombie collector waiting for pid 1259021
[2026-02-01 03:48:56] 2026-02-01 06:12:41,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 03:48:56] 2026-02-01 06:12:41,545 | INFO     | collected zombie processes
[2026-02-01 03:48:56] 2026-02-01 06:12:41,545 | INFO     | will attempt to kill all subprocesses of pid=1259021
[2026-02-01 03:48:56] 2026-02-01 06:12:43,781 | INFO     | process IDs to be killed: [1259021] (in reverse order)
[2026-02-01 03:48:56] 2026-02-01 06:12:44,258 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 03:48:56] 2026-02-01 06:12:44,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 03:48:56] 2026-02-01 06:12:44,277 | INFO     | did not find any defunct processes belonging to 1259021
[2026-02-01 03:48:56] 2026-02-01 06:12:44,296 | INFO     | did not find any defunct processes belonging to 1259021
[2026-02-01 03:48:56] 2026-02-01 06:12:44,296 | INFO     | ready for new job
[2026-02-01 03:48:56] 2026-02-01 06:12:44,296 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 03:48:56] 2026-02-01 06:12:44,303 | INFO     | **************************************
[2026-02-01 03:48:56] 2026-02-01 06:12:44,303 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 03:48:56] 2026-02-01 06:12:44,303 | INFO     | **************************************
[2026-02-01 03:48:56] 2026-02-01 06:12:44,303 | INFO     | 
[2026-02-01 03:48:56] 2026-02-01 06:12:44,313 | INFO     | architecture information:
[2026-02-01 03:48:56] 2026-02-01 06:12:44,317 | INFO     | executing command: cat /etc/os-release
[2026-02-01 03:48:56] 2026-02-01 06:12:44,367 | INFO     | cat /etc/os-release:
[2026-02-01 03:48:56] NAME="CentOS Linux"
[2026-02-01 03:48:56] VERSION="7 (Core)"
[2026-02-01 03:48:56] ID="centos"
[2026-02-01 03:48:56] ID_LIKE="rhel fedora"
[2026-02-01 03:48:56] VERSION_ID="7"
[2026-02-01 03:48:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 03:48:56] ANSI_COLOR="0;31"
[2026-02-01 03:48:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 03:48:56] HOME_URL="https://www.centos.org/"
[2026-02-01 03:48:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 03:48:56] 
[2026-02-01 03:48:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 03:48:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 03:48:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 03:48:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 03:48:56] 
[2026-02-01 03:48:56] 2026-02-01 06:12:44,368 | INFO     | **************************************
[2026-02-01 03:48:56] 2026-02-01 06:12:44,871 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-01 03:48:56] 2026-02-01 06:12:44,964 | INFO     | sufficient remaining disk space (85476769792 B)
[2026-02-01 03:48:56] 2026-02-01 06:12:44,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 03:48:56] 2026-02-01 06:12:44,965 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 03:48:56] 2026-02-01 06:12:44,965 | INFO     | update_server=False
[2026-02-01 03:48:56] 2026-02-01 06:12:44,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 03:48:56] 2026-02-01 06:12:44,965 | INFO     | all payload control threads have been joined
[2026-02-01 03:48:56] 2026-02-01 06:12:44,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 03:48:56] 2026-02-01 06:12:45,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:48:56] 2026-02-01 06:12:45,035 | INFO     | aborting loop
[2026-02-01 03:48:56] 2026-02-01 06:12:45,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:48:56] 2026-02-01 06:12:45,944 | INFO     | all data control threads have been joined
[2026-02-01 03:48:56] 2026-02-01 06:12:45,971 | INFO     | [job] retrieve thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:45,971 | INFO     | [payload] control thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,040 | INFO     | [job] job monitor thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,413 | INFO     | [payload] failed_post thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,477 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,481 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,482 | INFO     | all job control threads have been joined
[2026-02-01 03:48:56] 2026-02-01 06:12:46,482 | INFO     | [payload] validate_post thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,504 | INFO     | [data] copytool_in thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,538 | INFO     | [job] queue monitor thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,616 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,950 | INFO     | [data] control thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:46,974 | INFO     | [data] copytool_out thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:47,142 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:47,153 | INFO     | [job] validate thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:47,503 | INFO     | [job] control thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:12:48,418 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 03:48:56] 2026-02-01 06:12:52,428 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 03:48:56] 2026-02-01 06:13:15,594 | INFO     | PID=1249344 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 03:48:56] 2026-02-01 06:13:15,595 | INFO     | .. there are 29 such processes running
[2026-02-01 03:48:56] 2026-02-01 06:13:15,595 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 03:48:56] 2026-02-01 06:13:15,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 03:48:56] 2026-02-01 06:13:15,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 03:48:56] 2026-02-01 06:13:34,304 | INFO     | [monitor] cgroup control has ended
[2026-02-01 03:48:56] 2026-02-01 06:13:36,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837510506304)>', '<ExcThread(monitor, started 139836879005440)>']
[2026-02-01 03:48:56] 2026-02-01 06:13:36,743 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 03:48:56] 2026-02-01 06:13:36,744 | INFO     | [monitor] control thread has ended
[2026-02-01 03:48:56] 2026-02-01 06:13:41,204 | INFO     | all workflow threads have been joined
[2026-02-01 03:48:56] 2026-02-01 06:13:41,205 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 03:48:56] 2026-02-01 06:13:41,205 | INFO     | traces error code: 0
[2026-02-01 03:48:56] 2026-02-01 06:13:41,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 03:48:56] 2026-02-01 06:13:41,835 [wrapper] ==== pilot stdout END ====
[2026-02-01 03:48:56] 2026-02-01 06:13:41,852 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 03:48:56] 2026-02-01 06:13:41,855 [wrapper] pilotpid: 1249344
[2026-02-01 03:48:56] 2026-02-01 06:13:41,860 [wrapper] Pilot exit status: 0
[2026-02-01 03:48:56] 2026-02-01 06:13:41,961 [wrapper] pandaids: 6994681036 6994681036
[2026-02-01 03:48:56] 2026-02-01 06:13:42,289 [wrapper] cleanup supervisor_pilot 2239433 1249345
[2026-02-01 03:48:56] 2026-02-01 06:13:42,314 [wrapper] Test setup, not cleaning
[2026-02-01 03:48:56] 2026-02-01 06:13:42,378 [wrapper] apfmon messages muted
[2026-02-01 03:48:56] 2026-02-01 06:13:42,411 [wrapper] ==== wrapper stdout END ====
[2026-02-01 03:48:56] 2026-02-01 06:13:42,427 [wrapper] ==== wrapper stderr END ====
[2026-02-01 03:48:56]  *** Error codes and diagnostics ***
[2026-02-01 03:48:56]     "exeErrorCode": 0,
[2026-02-01 03:48:56]     "exeErrorDiag": "",
[2026-02-01 03:48:56]     "pilotErrorCode": 0,
[2026-02-01 03:48:56]     "pilotErrorDiag": "",
[2026-02-01 03:48:56]  *** Listing of results directory ***
[2026-02-01 03:48:56] total 1159540
[2026-02-01 03:48:56] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas    584422 Jan 31 08:56 pilot3.tar.gz
[2026-02-01 03:48:56] -rwx------. 1 boincer umatlas     36322 Jan 31 08:57 runpilot2-wrapper.sh
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas      5111 Jan 31 08:59 queuedata.json
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas       100 Jan 31 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 03:48:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 31 17:08 run_atlas
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas       105 Jan 31 17:08 job.xml
[2026-02-01 03:48:56] -rw-r--r--. 3 boincer umatlas 495034876 Jan 31 17:08 EVNT.48310585._000171.pool.root.1
[2026-02-01 03:48:56] -rw-r--r--. 3 boincer umatlas 495034876 Jan 31 17:08 ATLAS.root_0
[2026-02-01 03:48:56] -rw-r--r--. 2 boincer umatlas     15845 Jan 31 17:08 start_atlas.sh
[2026-02-01 03:48:56] drwxrwx--x. 2 boincer umatlas      4096 Jan 31 17:08 shared
[2026-02-01 03:48:56] -rw-r--r--. 2 boincer umatlas    597760 Jan 31 17:08 input.tar.gz
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas         0 Jan 31 17:08 boinc_lockfile
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas      2529 Jan 31 17:47 pandaJob.out
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas        57 Jan 31 17:47 setup.sh.local
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas   1010520 Jan 31 17:47 agis_schedconf.cvmfs.json
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas       435 Jan 31 17:47 workernode_map.json
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas 185314775 Feb  1 01:07 HITS.48310589._008931.pool.root.1
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas       531 Feb  1 01:08 boinc_task_state.xml
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas      1052 Feb  1 01:12 memory_monitor_summary.json
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas        96 Feb  1 01:12 pilot_heartbeat.json
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas   1511668 Feb  1 01:12 agis_ddmendpoints.agis.ALL.json
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas    659246 Feb  1 01:12 log.48310589._008931.job.log.tgz.1
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas      6405 Feb  1 01:12 heartbeat.json
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas      4820 Feb  1 01:13 pilotlog.txt
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas   3355690 Feb  1 01:13 log.48310589._008931.job.log.1
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas       357 Feb  1 01:13 output.list
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas       620 Feb  1 01:13 runtime_log
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas   4034560 Feb  1 01:13 result.tar.gz
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas       787 Feb  1 01:13 SajMDmpeQ68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm33NKDm9QK7Fo.diag
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas      9437 Feb  1 01:13 runtime_log.err
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas      6880 Feb  1 03:48 init_data.xml
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas      8192 Feb  1 03:48 boinc_mmap_file
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas        28 Feb  1 03:48 wrapper_checkpoint.txt
[2026-02-01 03:48:56] -rw-r--r--. 1 boincer umatlas     23413 Feb  1 03:48 stderr.txt
[2026-02-01 03:48:56] HITS file was successfully produced:
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas 185314775 Feb  1 01:07 shared/HITS.pool.root.1
[2026-02-01 03:48:56]  *** Contents of shared directory: ***
[2026-02-01 03:48:56] total 668956
[2026-02-01 03:48:56] -rw-r--r--. 3 boincer umatlas 495034876 Jan 31 17:08 ATLAS.root_0
[2026-02-01 03:48:56] -rw-r--r--. 2 boincer umatlas     15845 Jan 31 17:08 start_atlas.sh
[2026-02-01 03:48:56] -rw-r--r--. 2 boincer umatlas    597760 Jan 31 17:08 input.tar.gz
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas 185314775 Feb  1 01:07 HITS.pool.root.1
[2026-02-01 03:48:56] -rw-------. 1 boincer umatlas   4034560 Feb  1 01:13 result.tar.gz
03:48:58 (1234600): run_atlas exited; CPU time 44193.438141
03:48:58 (1234600): called boinc_finish(0)

</stderr_txt>
]]>

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