Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:41:41 (14653): wrapper (7.7.26015): starting
04:41:41 (14653): wrapper: running run_atlas (--nthreads 8)
[2026-02-01 04:41:41] Arguments: --nthreads 8
[2026-02-01 04:41:41] Threads: 8
[2026-02-01 04:41:41] Checking for CVMFS
[2026-02-01 04:41:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 04:41:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 04:41:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 04:41:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 04:41:46] 2.11.2.0 26158 68008 132924 155736 3 93 15814800 25165824 937 130560 0 14406569 99.732 16690006 2136 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-01 04:41:46] CVMFS is ok
[2026-02-01 04:41:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 04:41:46] Checking for apptainer binary...
[2026-02-01 04:41:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 04:41:46] Running /usr/bin/apptainer --version
[2026-02-01 04:41:46] apptainer version 1.3.2-1.el7
[2026-02-01 04:41:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 04:42:01] cg-vwn378.simple-grid.lan
[2026-02-01 04:42:01] apptainer works
[2026-02-01 04:42:01] Set ATHENA_PROC_NUMBER=8
[2026-02-01 04:42:01] Set ATHENA_CORE_NUMBER=8
[2026-02-01 04:42:01] Starting ATLAS job with PandaID=6994680000
[2026-02-01 04:42:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 08:49:36]  *** The last 200 lines of the pilot log: ***
[2026-02-01 08:49:36] 2026-02-01 07:48:49,411 | INFO     | total number of processed events: 400 (read)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,413 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6994680000/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,414 | INFO     | extracted standard info from prmon json
[2026-02-01 08:49:36] 2026-02-01 07:48:49,414 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 08:49:36] 2026-02-01 07:48:49,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 08:49:36] 2026-02-01 07:48:49,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 08:49:36] 2026-02-01 07:48:49,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 08:49:36] 2026-02-01 07:48:49,420 | INFO     | fitting pss+swap vs Time
[2026-02-01 08:49:36] 2026-02-01 07:48:49,421 | INFO     | sum of square deviations: 3822136780.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,423 | INFO     | sum of deviations: 92347917323.99998
[2026-02-01 08:49:36] 2026-02-01 07:48:49,424 | INFO     | mean x: 1769925079.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,424 | INFO     | mean y: 2419027.5974025973
[2026-02-01 08:49:36] 2026-02-01 07:48:49,424 | INFO     | intersect: -42761329177.448814
[2026-02-01 08:49:36] 2026-02-01 07:48:49,424 | INFO     | chi2: 7.009862910621516
[2026-02-01 08:49:36] 2026-02-01 07:48:49,425 | INFO     | sum of square deviations: 3579276412.5
[2026-02-01 08:49:36] 2026-02-01 07:48:49,427 | INFO     | sum of deviations: 106008036229.49997
[2026-02-01 08:49:36] 2026-02-01 07:48:49,427 | INFO     | mean x: 1769924926.5
[2026-02-01 08:49:36] 2026-02-01 07:48:49,427 | INFO     | mean y: 2427430.0663716816
[2026-02-01 08:49:36] 2026-02-01 07:48:49,428 | INFO     | intersect: -52417739136.74445
[2026-02-01 08:49:36] 2026-02-01 07:48:49,428 | INFO     | chi2: 6.233964059463678
[2026-02-01 08:49:36] 2026-02-01 07:48:49,431 | INFO     | current chi2=6.233964059463678 (change=11.068673682365132 %)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,432 | INFO     | right removable region: 225
[2026-02-01 08:49:36] 2026-02-01 07:48:49,432 | INFO     | sum of square deviations: 3579276412.5
[2026-02-01 08:49:36] 2026-02-01 07:48:49,434 | INFO     | sum of deviations: 15031397014.499996
[2026-02-01 08:49:36] 2026-02-01 07:48:49,434 | INFO     | mean x: 1769925231.5
[2026-02-01 08:49:36] 2026-02-01 07:48:49,435 | INFO     | mean y: 2467534.384955752
[2026-02-01 08:49:36] 2026-02-01 07:48:49,435 | INFO     | intersect: -7430445092.24145
[2026-02-01 08:49:36] 2026-02-01 07:48:49,435 | INFO     | chi2: 2.4164766184089435
[2026-02-01 08:49:36] 2026-02-01 07:48:49,435 | INFO     | current chi2=2.4164766184089435 (change=65.52747679633737 %)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,436 | INFO     | sum of square deviations: 3346927870.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,438 | INFO     | sum of deviations: -24861093571.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,438 | INFO     | mean x: 1769925384.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,438 | INFO     | mean y: 2493552.0814479636
[2026-02-01 08:49:36] 2026-02-01 07:48:49,438 | INFO     | intersect: 13149559247.677721
[2026-02-01 08:49:36] 2026-02-01 07:48:49,439 | INFO     | chi2: 0.9597321243494064
[2026-02-01 08:49:36] 2026-02-01 07:48:49,439 | INFO     | current chi2=0.9597321243494064 (change=60.28382327235953 %)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,439 | INFO     | sum of square deviations: 3124858590.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,441 | INFO     | sum of deviations: -23146680763.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,441 | INFO     | mean x: 1769925536.5
[2026-02-01 08:49:36] 2026-02-01 07:48:49,442 | INFO     | mean y: 2492323.4814814813
[2026-02-01 08:49:36] 2026-02-01 07:48:49,442 | INFO     | intersect: 13112814018.917627
[2026-02-01 08:49:36] 2026-02-01 07:48:49,442 | INFO     | chi2: 0.9317266582647502
[2026-02-01 08:49:36] 2026-02-01 07:48:49,442 | INFO     | current chi2=0.9317266582647502 (change=2.918050294882106 %)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,442 | INFO     | left removable region: 30
[2026-02-01 08:49:36] 2026-02-01 07:48:49,443 | INFO     | sum of square deviations: 2299168690.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,444 | INFO     | sum of deviations: 3087201887.000002
[2026-02-01 08:49:36] 2026-02-01 07:48:49,445 | INFO     | mean x: 1769925811.0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,445 | INFO     | mean y: 2494617.394871795
[2026-02-01 08:49:36] 2026-02-01 07:48:49,445 | INFO     | intersect: -2374067975.5696354
[2026-02-01 08:49:36] 2026-02-01 07:48:49,445 | INFO     | chi2: 0.0002781531095781795
[2026-02-01 08:49:36] 2026-02-01 07:48:49,446 | INFO     | current memory leak: 1.34 B/s (using 195 data points, chi2=0.00)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,446 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | ..............................
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . Timing measurements:
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . get job = 0 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . initial setup = 117 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . payload setup = 167 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . stage-in = 0 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . payload execution = 14197 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,447 | INFO     | . stage-out = 4 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,448 | INFO     | . log creation = 1 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,448 | INFO     | ..............................
[2026-02-01 08:49:36] 2026-02-01 07:48:49,582 | INFO     | 
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | job summary report
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | --------------------------------------------------
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | PanDA job id: 6994680000
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | task id: 48310589
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | errors: (none)
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | pilot state: finished 
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | transexitcode: 0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,583 | INFO     | exeerrorcode: 0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | exeerrordiag: 
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | exitcode: 0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | exitmsg: OK
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | cpuconsumptiontime: 51707 s
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | nevents: 400
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | neventsw: 0
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | pid: 23172
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | pgrp: 23172
[2026-02-01 08:49:36] 2026-02-01 07:48:49,584 | INFO     | corecount: 8
[2026-02-01 08:49:36] 2026-02-01 07:48:49,585 | INFO     | event service: False
[2026-02-01 08:49:36] 2026-02-01 07:48:49,585 | INFO     | sizes: {0: 2277187, 1: 2277873, 2: 2278334, 12: 2278334, 14370: 2309019, 14375: 2318019, 14376: 2318397}
[2026-02-01 08:49:36] 2026-02-01 07:48:49,585 | INFO     | --------------------------------------------------
[2026-02-01 08:49:36] 2026-02-01 07:48:49,585 | INFO     | 
[2026-02-01 08:49:36] 2026-02-01 07:48:49,585 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-02-01 08:49:36] 2026-02-01 07:48:50,222 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,222 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,222 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,222 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,222 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,224 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 08:49:36] 2026-02-01 07:48:50,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,224 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 08:49:36] 2026-02-01 07:48:50,224 | INFO     | job 6994680000 has completed (purged errors)
[2026-02-01 08:49:36] 2026-02-01 07:48:50,224 | INFO     | overall cleanup function is called
[2026-02-01 08:49:36] 2026-02-01 07:48:51,233 | INFO     | --- collectZombieJob: --- 10, [23172]
[2026-02-01 08:49:36] 2026-02-01 07:48:51,234 | INFO     | zombie collector waiting for pid 23172
[2026-02-01 08:49:36] 2026-02-01 07:48:51,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 08:49:36] 2026-02-01 07:48:51,234 | INFO     | collected zombie processes
[2026-02-01 08:49:36] 2026-02-01 07:48:51,234 | INFO     | will attempt to kill all subprocesses of pid=23172
[2026-02-01 08:49:36] 2026-02-01 07:48:51,312 | INFO     | process IDs to be killed: [23172] (in reverse order)
[2026-02-01 08:49:36] 2026-02-01 07:48:51,379 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 08:49:36] 2026-02-01 07:48:51,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 08:49:36] 2026-02-01 07:48:51,381 | INFO     | did not find any defunct processes belonging to 23172
[2026-02-01 08:49:36] 2026-02-01 07:48:51,384 | INFO     | did not find any defunct processes belonging to 23172
[2026-02-01 08:49:36] 2026-02-01 07:48:51,384 | INFO     | ready for new job
[2026-02-01 08:49:36] 2026-02-01 07:48:51,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 08:49:36] 2026-02-01 07:48:51,387 | INFO     | **************************************
[2026-02-01 08:49:36] 2026-02-01 07:48:51,387 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 08:49:36] 2026-02-01 07:48:51,387 | INFO     | **************************************
[2026-02-01 08:49:36] 2026-02-01 07:48:51,387 | INFO     | 
[2026-02-01 08:49:36] 2026-02-01 07:48:51,388 | INFO     | pilot is running in a VM
[2026-02-01 08:49:36] 2026-02-01 07:48:51,388 | INFO     | architecture information:
[2026-02-01 08:49:36] 2026-02-01 07:48:51,388 | INFO     | executing command: cat /etc/os-release
[2026-02-01 08:49:36] 2026-02-01 07:48:51,669 | INFO     | cat /etc/os-release:
[2026-02-01 08:49:36] NAME="CentOS Linux"
[2026-02-01 08:49:36] VERSION="7 (Core)"
[2026-02-01 08:49:36] ID="centos"
[2026-02-01 08:49:36] ID_LIKE="rhel fedora"
[2026-02-01 08:49:36] VERSION_ID="7"
[2026-02-01 08:49:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 08:49:36] ANSI_COLOR="0;31"
[2026-02-01 08:49:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 08:49:36] HOME_URL="https://www.centos.org/"
[2026-02-01 08:49:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 08:49:36] 
[2026-02-01 08:49:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 08:49:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 08:49:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 08:49:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 08:49:36] 
[2026-02-01 08:49:36] 2026-02-01 07:48:51,669 | INFO     | **************************************
[2026-02-01 08:49:36] 2026-02-01 07:48:52,172 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-02-01 08:49:36] 2026-02-01 07:48:52,434 | INFO     | sufficient remaining disk space (495867396096 B)
[2026-02-01 08:49:36] 2026-02-01 07:48:52,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 08:49:36] 2026-02-01 07:48:52,434 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 08:49:36] 2026-02-01 07:48:52,435 | INFO     | update_server=False
[2026-02-01 08:49:36] 2026-02-01 07:48:52,435 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 08:49:36] 2026-02-01 07:48:52,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 08:49:36] 2026-02-01 07:48:52,792 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 08:49:36] 2026-02-01 07:48:52,793 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 08:49:36] 2026-02-01 07:48:52,793 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 08:49:36] 2026-02-01 07:48:52,793 | INFO     | will abort loop
[2026-02-01 08:49:36] 2026-02-01 07:48:53,231 | INFO     | all data control threads have been joined
[2026-02-01 08:49:36] 2026-02-01 07:48:53,332 | INFO     | all job control threads have been joined
[2026-02-01 08:49:36] 2026-02-01 07:48:53,352 | INFO     | all payload control threads have been joined
[2026-02-01 08:49:36] 2026-02-01 07:48:53,440 | INFO     | [job] retrieve thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:53,618 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:53,798 | INFO     | [job] job monitor thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:53,931 | INFO     | [payload] validate_post thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:53,940 | INFO     | [job] validate thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:53,960 | INFO     | [payload] failed_post thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,237 | INFO     | [data] control thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,338 | INFO     | [job] control thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,358 | INFO     | [payload] control thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,374 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,442 | INFO     | [data] copytool_out thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,545 | INFO     | [data] copytool_in thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 08:49:36] 2026-02-01 07:48:54,730 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:54,850 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:55,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 08:49:36] 2026-02-01 07:48:55,600 | INFO     | [job] queue monitor thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:48:59,316 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 08:49:36] 2026-02-01 07:49:21,444 | INFO     | PID=18725 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 08:49:36] 2026-02-01 07:49:21,444 | INFO     | .. there are 2 such processes running
[2026-02-01 08:49:36] 2026-02-01 07:49:21,445 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 08:49:36] 2026-02-01 07:49:21,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 08:49:36] 2026-02-01 07:49:21,450 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 08:49:36] 2026-02-01 07:49:25,552 | INFO     | [monitor] cgroup control has ended
[2026-02-01 08:49:36] 2026-02-01 07:49:26,710 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140299506288448)>', '<ExcThread(monitor, started 140299287963392)>']
[2026-02-01 08:49:36] 2026-02-01 07:49:27,485 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 08:49:36] 2026-02-01 07:49:27,486 | INFO     | [monitor] control thread has ended
[2026-02-01 08:49:36] 2026-02-01 07:49:31,736 | INFO     | all workflow threads have been joined
[2026-02-01 08:49:36] 2026-02-01 07:49:31,736 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 08:49:36] 2026-02-01 07:49:31,737 | INFO     | traces error code: 0
[2026-02-01 08:49:36] 2026-02-01 07:49:31,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 08:49:36] 2026-02-01 07:49:32,208 [wrapper] ==== pilot stdout END ====
[2026-02-01 08:49:36] 2026-02-01 07:49:32,331 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 08:49:36] 2026-02-01 07:49:32,439 [wrapper] pilotpid: 18725
[2026-02-01 08:49:36] 2026-02-01 07:49:32,540 [wrapper] Pilot exit status: 0
[2026-02-01 08:49:36] 2026-02-01 07:49:32,780 [wrapper] pandaids: 6994680000
[2026-02-01 08:49:36] 2026-02-01 07:49:33,790 [wrapper] cleanup supervisor_pilot 30120 18726
[2026-02-01 08:49:36] 2026-02-01 07:49:33,882 [wrapper] Test setup, not cleaning
[2026-02-01 08:49:36] 2026-02-01 07:49:33,997 [wrapper] apfmon messages muted
[2026-02-01 08:49:36] 2026-02-01 07:49:34,105 [wrapper] ==== wrapper stdout END ====
[2026-02-01 08:49:36] 2026-02-01 07:49:34,193 [wrapper] ==== wrapper stderr END ====
[2026-02-01 08:49:36]  *** Error codes and diagnostics ***
[2026-02-01 08:49:36]     "exeErrorCode": 0,
[2026-02-01 08:49:36]     "exeErrorDiag": "",
[2026-02-01 08:49:36]     "pilotErrorCode": 0,
[2026-02-01 08:49:36]     "pilotErrorDiag": "",
[2026-02-01 08:49:36]  *** Listing of results directory ***
[2026-02-01 08:49:36] total 665464
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc    584422 Jan 31 14:56 pilot3.tar.gz
[2026-02-01 08:49:36] -rwx------. 1 boinc boinc     36322 Jan 31 14:56 runpilot2-wrapper.sh
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc      5111 Jan 31 14:57 queuedata.json
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc       100 Feb  1 04:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 08:49:36] -rwxr-xr-x. 1 boinc boinc      7986 Feb  1 04:41 run_atlas
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc       105 Feb  1 04:41 job.xml
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc      6392 Feb  1 04:41 init_data.xml
[2026-02-01 08:49:36] -rw-r--r--. 2 boinc boinc 492037328 Feb  1 04:41 EVNT.48310585._000157.pool.root.1
[2026-02-01 08:49:36] -rw-r--r--. 2 boinc boinc     15845 Feb  1 04:41 start_atlas.sh
[2026-02-01 08:49:36] drwxrwx--x. 2 boinc boinc        68 Feb  1 04:41 shared
[2026-02-01 08:49:36] -rw-r--r--. 2 boinc boinc    597758 Feb  1 04:41 input.tar.gz
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc         0 Feb  1 04:41 boinc_lockfile
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc      2528 Feb  1 04:42 pandaJob.out
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc       415 Feb  1 04:48 workernode_map.json
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc   1010520 Feb  1 04:49 agis_schedconf.cvmfs.json
[2026-02-01 08:49:36] drwx------. 5 boinc boinc      4096 Feb  1 04:49 pilot3
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc 180464779 Feb  1 08:47 HITS.48310589._008209.pool.root.1
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc       532 Feb  1 08:47 boinc_task_state.xml
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc      1013 Feb  1 08:48 memory_monitor_summary.json
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc   1511668 Feb  1 08:48 agis_ddmendpoints.agis.ALL.json
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc    475075 Feb  1 08:48 log.48310589._008209.job.log.tgz.1
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc      6313 Feb  1 08:48 heartbeat.json
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc        95 Feb  1 08:49 pilot_heartbeat.json
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc        28 Feb  1 08:49 wrapper_checkpoint.txt
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc      8192 Feb  1 08:49 boinc_mmap_file
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc      5067 Feb  1 08:49 pilotlog.txt
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc   2029657 Feb  1 08:49 log.48310589._008209.job.log.1
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc       357 Feb  1 08:49 output.list
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc       620 Feb  1 08:49 runtime_log
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc   2519040 Feb  1 08:49 result.tar.gz
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc      8832 Feb  1 08:49 runtime_log.err
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc       655 Feb  1 08:49 3JLMDmAeQ68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8zNKDms0yeFm.diag
[2026-02-01 08:49:36] -rw-r--r--. 1 boinc boinc     20654 Feb  1 08:49 stderr.txt
[2026-02-01 08:49:36] HITS file was successfully produced:
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc 180464779 Feb  1 08:47 shared/HITS.pool.root.1
[2026-02-01 08:49:36]  *** Contents of shared directory: ***
[2026-02-01 08:49:36] total 659804
[2026-02-01 08:49:36] -rw-r--r--. 2 boinc boinc 492037328 Feb  1 04:41 ATLAS.root_0
[2026-02-01 08:49:36] -rw-r--r--. 2 boinc boinc     15845 Feb  1 04:41 start_atlas.sh
[2026-02-01 08:49:36] -rw-r--r--. 2 boinc boinc    597758 Feb  1 04:41 input.tar.gz
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc 180464779 Feb  1 08:47 HITS.pool.root.1
[2026-02-01 08:49:36] -rw-------. 1 boinc boinc   2519040 Feb  1 08:49 result.tar.gz
08:49:38 (14653): run_atlas exited; CPU time 51865.485905
08:49:38 (14653): called boinc_finish(0)

</stderr_txt>
]]>

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