Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:16:23 (784107): wrapper (7.7.26015): starting
08:16:23 (784107): wrapper: running run_atlas (--nthreads 3)
[2026-02-01 08:16:23] Arguments: --nthreads 3
[2026-02-01 08:16:23] Threads: 3
[2026-02-01 08:16:23] Checking for CVMFS
[2026-02-01 08:16:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 08:16:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 08:16:23] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 08:16:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 08:16:23] 2.9.2.0 4027610 5458 85540 155742 0 49 25015507 36864001 0 130560 0 2480747 99.987 167468 12301 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 08:16:23] CVMFS is ok
[2026-02-01 08:16:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 08:16:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 08:16:23] Further information can be found at the LHC@home message board.
[2026-02-01 08:16:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 08:16:23] Checking for apptainer binary...
[2026-02-01 08:16:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 08:16:23] Running /usr/bin/apptainer --version
[2026-02-01 08:16:23] apptainer version 1.4.1-1.1
[2026-02-01 08:16:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 08:16:23] magicA246a
[2026-02-01 08:16:23] apptainer works
[2026-02-01 08:16:23] Set ATHENA_PROC_NUMBER=3
[2026-02-01 08:16:23] Set ATHENA_CORE_NUMBER=3
[2026-02-01 08:16:23] Starting ATLAS job with PandaID=6994615661
[2026-02-01 08:16:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 10:06:52]  *** The last 200 lines of the pilot log: ***
[2026-02-01 10:06:52] 2026-02-01 09:06:20,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 10:06:52] 2026-02-01 09:06:20,361 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 10:06:52] 2026-02-01 09:06:20,361 | INFO     | job 6994615661 has completed (purged errors)
[2026-02-01 10:06:52] 2026-02-01 09:06:20,361 | INFO     | overall cleanup function is called
[2026-02-01 10:06:52] 2026-02-01 09:06:20,869 | WARNING  | process 792566 can no longer be monitored (due to stat problems) - aborting
[2026-02-01 10:06:52] 2026-02-01 09:06:20,910 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 10:06:52] 2026-02-01 09:06:20,961 | INFO     | number of running child processes to parent process 792566: 1
[2026-02-01 10:06:52] 2026-02-01 09:06:20,961 | INFO     | maximum number of monitored processes: 6
[2026-02-01 10:06:52] 2026-02-01 09:06:20,961 | INFO     | aborting job monitoring since job object (job id=6994615661) has expired
[2026-02-01 10:06:52] 2026-02-01 09:06:21,366 | INFO     | --- collectZombieJob: --- 10, [792566]
[2026-02-01 10:06:52] 2026-02-01 09:06:21,367 | INFO     | zombie collector waiting for pid 792566
[2026-02-01 10:06:52] 2026-02-01 09:06:21,367 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 10:06:52] 2026-02-01 09:06:21,367 | INFO     | collected zombie processes
[2026-02-01 10:06:52] 2026-02-01 09:06:21,367 | INFO     | will attempt to kill all subprocesses of pid=792566
[2026-02-01 10:06:52] 2026-02-01 09:06:21,422 | INFO     | process IDs to be killed: [792566] (in reverse order)
[2026-02-01 10:06:52] 2026-02-01 09:06:21,450 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 10:06:52] 2026-02-01 09:06:21,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 10:06:52] 2026-02-01 09:06:21,452 | INFO     | did not find any defunct processes belonging to 792566
[2026-02-01 10:06:52] 2026-02-01 09:06:21,453 | INFO     | did not find any defunct processes belonging to 792566
[2026-02-01 10:06:52] 2026-02-01 09:06:21,453 | INFO     | ready for new job
[2026-02-01 10:06:52] 2026-02-01 09:06:21,453 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 10:06:52] 2026-02-01 09:06:21,454 | INFO     | **************************************
[2026-02-01 10:06:52] 2026-02-01 09:06:21,454 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 10:06:52] 2026-02-01 09:06:21,454 | INFO     | **************************************
[2026-02-01 10:06:52] 2026-02-01 09:06:21,454 | INFO     | 
[2026-02-01 10:06:52] 2026-02-01 09:06:21,455 | INFO     | architecture information:
[2026-02-01 10:06:52] 2026-02-01 09:06:21,455 | INFO     | executing command: cat /etc/os-release
[2026-02-01 10:06:52] 2026-02-01 09:06:21,463 | INFO     | cat /etc/os-release:
[2026-02-01 10:06:52] NAME="CentOS Linux"
[2026-02-01 10:06:52] VERSION="7 (Core)"
[2026-02-01 10:06:52] ID="centos"
[2026-02-01 10:06:52] ID_LIKE="rhel fedora"
[2026-02-01 10:06:52] VERSION_ID="7"
[2026-02-01 10:06:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 10:06:52] ANSI_COLOR="0;31"
[2026-02-01 10:06:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 10:06:52] HOME_URL="https://www.centos.org/"
[2026-02-01 10:06:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 10:06:52] 
[2026-02-01 10:06:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 10:06:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 10:06:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 10:06:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 10:06:52] 
[2026-02-01 10:06:52] 2026-02-01 09:06:21,463 | INFO     | **************************************
[2026-02-01 10:06:52] 2026-02-01 09:06:21,966 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 10:06:52] 2026-02-01 09:06:21,977 | INFO     | sufficient remaining disk space (275964231680 B)
[2026-02-01 10:06:52] 2026-02-01 09:06:21,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 10:06:52] 2026-02-01 09:06:21,978 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 10:06:52] 2026-02-01 09:06:21,978 | INFO     | update_server=False
[2026-02-01 10:06:52] 2026-02-01 09:06:21,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 10:06:52] 2026-02-01 09:06:21,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 10:06:52] 2026-02-01 09:06:21,978 | INFO     | aborting loop
[2026-02-01 10:06:52] 2026-02-01 09:06:22,037 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 10:06:52] 2026-02-01 09:06:22,329 | INFO     | all payload control threads have been joined
[2026-02-01 10:06:52] 2026-02-01 09:06:22,937 | INFO     | all data control threads have been joined
[2026-02-01 10:06:52] 2026-02-01 09:06:22,982 | INFO     | [job] job monitor thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:22,983 | INFO     | [job] retrieve thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,006 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,013 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,134 | INFO     | [data] copytool_in thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,335 | INFO     | [payload] control thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,525 | INFO     | all job control threads have been joined
[2026-02-01 10:06:52] 2026-02-01 09:06:23,839 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,885 | INFO     | [payload] failed_post thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:23,943 | INFO     | [data] control thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:24,043 | INFO     | [data] copytool_out thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:24,391 | INFO     | [payload] validate_post thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:24,440 | INFO     | [job] validate thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:24,530 | INFO     | [job] control thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:24,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 10:06:52] 2026-02-01 09:06:24,978 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 10:06:52] 2026-02-01 09:06:25,984 | INFO     | [job] queue monitor thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:28,538 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:32,461 | INFO     | job.realtimelogging is not enabled
[2026-02-01 10:06:52] 2026-02-01 09:06:33,467 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 10:06:52] 2026-02-01 09:06:40,751 | INFO     | [monitor] cgroup control has ended
[2026-02-01 10:06:52] 2026-02-01 09:06:41,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140705851447104)>', '<ExcThread(monitor, started 140705141880576)>']
[2026-02-01 10:06:52] 2026-02-01 09:06:46,119 | INFO     | all workflow threads have been joined
[2026-02-01 10:06:52] 2026-02-01 09:06:46,119 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 10:06:52] 2026-02-01 09:06:46,119 | INFO     | traces error code: 0
[2026-02-01 10:06:52] 2026-02-01 09:06:46,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 10:06:52] 2026-02-01 09:06:52,809 | INFO     | PID=788147 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-01 10:06:52] 2026-02-01 09:06:52,809 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 10:06:52] 2026-02-01 09:06:52,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 10:06:52] 2026-02-01 09:06:52,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 10:06:52] 2026-02-01 09:06:52,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 10:06:52] 2026-02-01 09:06:52,809 | INFO     | [monitor] control thread has ended
[2026-02-01 10:06:52] 2026-02-01 09:06:52,859 [wrapper] ==== pilot stdout END ====
[2026-02-01 10:06:52] 2026-02-01 09:06:52,861 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 10:06:52] 2026-02-01 09:06:52,863 [wrapper] pilotpid: 788147
[2026-02-01 10:06:52] 2026-02-01 09:06:52,866 [wrapper] Pilot exit status: 0
[2026-02-01 10:06:52] 2026-02-01 09:06:52,873 [wrapper] pandaids: 6994615661
[2026-02-01 10:06:52] 2026-02-01 09:06:52,892 [wrapper] cleanup supervisor_pilot  799445 788148
[2026-02-01 10:06:52] 2026-02-01 09:06:52,895 [wrapper] Test setup, not cleaning
[2026-02-01 10:06:52] 2026-02-01 09:06:52,897 [wrapper] apfmon messages muted
[2026-02-01 10:06:52] 2026-02-01 09:06:52,899 [wrapper] ==== wrapper stdout END ====
[2026-02-01 10:06:52] 2026-02-01 09:06:52,901 [wrapper] ==== wrapper stderr END ====
[2026-02-01 10:06:52]  *** Error codes and diagnostics ***
[2026-02-01 10:06:52]     "exeErrorCode": 0,
[2026-02-01 10:06:52]     "exeErrorDiag": "",
[2026-02-01 10:06:52]     "pilotErrorCode": 0,
[2026-02-01 10:06:52]     "pilotErrorDiag": "",
[2026-02-01 10:06:52]  *** Listing of results directory ***
[2026-02-01 10:06:52] total 897104
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc    584422 Jan 31 13:07 pilot3.tar.gz
[2026-02-01 10:06:52] -rwx------ 1 boinc boinc     36322 Jan 31 13:07 runpilot2-wrapper.sh
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc      5111 Jan 31 13:11 queuedata.json
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc       100 Feb  1 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 10:06:52] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 08:16 run_atlas
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc       105 Feb  1 08:16 job.xml
[2026-02-01 10:06:52] -rw-r--r-- 2 boinc boinc 657297257 Feb  1 08:16 EVNT.48431078._000075.pool.root.1
[2026-02-01 10:06:52] -rw-r--r-- 2 boinc boinc    597770 Feb  1 08:16 input.tar.gz
[2026-02-01 10:06:52] -rw-r--r-- 2 boinc boinc     15845 Feb  1 08:16 start_atlas.sh
[2026-02-01 10:06:52] drwxrwx--x 2 boinc boinc      4096 Feb  1 08:16 shared
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc         0 Feb  1 08:16 boinc_setup_complete
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc      6447 Feb  1 08:16 init_data.xml
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc         0 Feb  1 08:16 boinc_lockfile
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc      2558 Feb  1 08:16 pandaJob.out
[2026-02-01 10:06:52] -rw------- 1 boinc boinc   1010520 Feb  1 08:16 agis_schedconf.cvmfs.json
[2026-02-01 10:06:52] -rw------- 1 boinc boinc   1511668 Feb  1 08:16 agis_ddmendpoints.agis.ALL.json
[2026-02-01 10:06:52] -rw------- 1 boinc boinc       428 Feb  1 08:16 workernode_map.json
[2026-02-01 10:06:52] drwx------ 5 boinc boinc      4096 Feb  1 08:16 pilot3
[2026-02-01 10:06:52] -rw------- 1 boinc boinc 254914227 Feb  1 10:05 HITS.48431080._003822.pool.root.1
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc       530 Feb  1 10:05 boinc_task_state.xml
[2026-02-01 10:06:52] -rw------- 1 boinc boinc        95 Feb  1 10:06 pilot_heartbeat.json
[2026-02-01 10:06:52] -rw------- 1 boinc boinc      1028 Feb  1 10:06 memory_monitor_summary.json
[2026-02-01 10:06:52] -rw------- 1 boinc boinc    300082 Feb  1 10:06 log.48431080._003822.job.log.tgz.1
[2026-02-01 10:06:52] -rw------- 1 boinc boinc      6313 Feb  1 10:06 heartbeat.json
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc      8192 Feb  1 10:06 boinc_mmap_file
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc        27 Feb  1 10:06 wrapper_checkpoint.txt
[2026-02-01 10:06:52] -rw------- 1 boinc boinc       746 Feb  1 10:06 pilotlog.txt
[2026-02-01 10:06:52] -rw------- 1 boinc boinc    949649 Feb  1 10:06 log.48431080._003822.job.log.1
[2026-02-01 10:06:52] -rw------- 1 boinc boinc       357 Feb  1 10:06 output.list
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc       620 Feb  1 10:06 runtime_log
[2026-02-01 10:06:52] -rw------- 1 boinc boinc   1269760 Feb  1 10:06 result.tar.gz
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc      8916 Feb  1 10:06 runtime_log.err
[2026-02-01 10:06:52] -rw------- 1 boinc boinc       661 Feb  1 10:06 FztMDmUwO68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvtNKDmLKAWFm.diag
[2026-02-01 10:06:52] -rw-r--r-- 1 boinc boinc     11731 Feb  1 10:06 stderr.txt
[2026-02-01 10:06:52] HITS file was successfully produced:
[2026-02-01 10:06:52] -rw------- 1 boinc boinc 254914227 Feb  1 10:05 shared/HITS.pool.root.1
[2026-02-01 10:06:52]  *** Contents of shared directory: ***
[2026-02-01 10:06:52] total 892680
[2026-02-01 10:06:52] -rw-r--r-- 2 boinc boinc 657297257 Feb  1 08:16 ATLAS.root_0
[2026-02-01 10:06:52] -rw-r--r-- 2 boinc boinc    597770 Feb  1 08:16 input.tar.gz
[2026-02-01 10:06:52] -rw-r--r-- 2 boinc boinc     15845 Feb  1 08:16 start_atlas.sh
[2026-02-01 10:06:52] -rw------- 1 boinc boinc 254914227 Feb  1 10:05 HITS.pool.root.1
[2026-02-01 10:06:52] -rw------- 1 boinc boinc   1269760 Feb  1 10:06 result.tar.gz
10:06:54 (784107): run_atlas exited; CPU time 19115.453125
10:06:54 (784107): called boinc_finish(0)

</stderr_txt>
]]>

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