Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:34:35 (2343382): wrapper (7.7.26015): starting
05:34:35 (2343382): wrapper: running run_atlas (--nthreads 2)
[2026-02-01 05:34:35] Arguments: --nthreads 2
[2026-02-01 05:34:35] Threads: 2
[2026-02-01 05:34:35] Checking for CVMFS
[2026-02-01 05:34:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 05:34:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 05:34:36] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 05:34:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 05:34:36] 2.9.2.0 1862690 5079 58256 155738 1 50 21971823 36864001 0 130560 0 1432230 99.980 158363 15944 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 05:34:36] CVMFS is ok
[2026-02-01 05:34:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 05:34:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 05:34:36] Further information can be found at the LHC@home message board.
[2026-02-01 05:34:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 05:34:36] Checking for apptainer binary...
[2026-02-01 05:34:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 05:34:36] Running /usr/bin/apptainer --version
[2026-02-01 05:34:36] apptainer version 1.4.1-1.1
[2026-02-01 05:34:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 05:34:36] thA337
[2026-02-01 05:34:36] apptainer works
[2026-02-01 05:34:36] Set ATHENA_PROC_NUMBER=2
[2026-02-01 05:34:36] Set ATHENA_CORE_NUMBER=2
[2026-02-01 05:34:36] Starting ATLAS job with PandaID=6978170896
[2026-02-01 05:34:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 07:30:22]  *** The last 200 lines of the pilot log: ***
[2026-02-01 07:30:22] 2026-02-01 06:29:50,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,906 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,906 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,906 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,906 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,906 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,907 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 07:30:22] 2026-02-01 06:29:50,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,907 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 07:30:22] 2026-02-01 06:29:50,907 | INFO     | job 6978170896 has completed (purged errors)
[2026-02-01 07:30:22] 2026-02-01 06:29:50,907 | INFO     | overall cleanup function is called
[2026-02-01 07:30:22] 2026-02-01 06:29:51,914 | INFO     | --- collectZombieJob: --- 10, [2351819]
[2026-02-01 07:30:22] 2026-02-01 06:29:51,914 | INFO     | zombie collector waiting for pid 2351819
[2026-02-01 07:30:22] 2026-02-01 06:29:51,915 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 07:30:22] 2026-02-01 06:29:51,915 | INFO     | collected zombie processes
[2026-02-01 07:30:22] 2026-02-01 06:29:51,915 | INFO     | will attempt to kill all subprocesses of pid=2351819
[2026-02-01 07:30:22] 2026-02-01 06:29:51,947 | INFO     | process IDs to be killed: [2351819] (in reverse order)
[2026-02-01 07:30:22] 2026-02-01 06:29:51,967 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 07:30:22] 2026-02-01 06:29:51,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 07:30:22] 2026-02-01 06:29:51,968 | INFO     | did not find any defunct processes belonging to 2351819
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | did not find any defunct processes belonging to 2351819
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | ready for new job
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | **************************************
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | **************************************
[2026-02-01 07:30:22] 2026-02-01 06:29:51,969 | INFO     | 
[2026-02-01 07:30:22] 2026-02-01 06:29:51,970 | INFO     | architecture information:
[2026-02-01 07:30:22] 2026-02-01 06:29:51,970 | INFO     | executing command: cat /etc/os-release
[2026-02-01 07:30:22] 2026-02-01 06:29:51,978 | INFO     | cat /etc/os-release:
[2026-02-01 07:30:22] NAME="CentOS Linux"
[2026-02-01 07:30:22] VERSION="7 (Core)"
[2026-02-01 07:30:22] ID="centos"
[2026-02-01 07:30:22] ID_LIKE="rhel fedora"
[2026-02-01 07:30:22] VERSION_ID="7"
[2026-02-01 07:30:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 07:30:22] ANSI_COLOR="0;31"
[2026-02-01 07:30:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 07:30:22] HOME_URL="https://www.centos.org/"
[2026-02-01 07:30:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 07:30:22] 
[2026-02-01 07:30:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 07:30:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 07:30:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 07:30:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 07:30:22] 
[2026-02-01 07:30:22] 2026-02-01 06:29:51,978 | INFO     | **************************************
[2026-02-01 07:30:22] 2026-02-01 06:29:52,482 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | INFO     | sufficient remaining disk space (487214546944 B)
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | INFO     | update_server=False
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 07:30:22] 2026-02-01 06:29:52,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 07:30:22] 2026-02-01 06:29:52,979 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 07:30:22] 2026-02-01 06:29:52,979 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 07:30:22] 2026-02-01 06:29:52,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 07:30:22] 2026-02-01 06:29:52,980 | INFO     | will abort loop
[2026-02-01 07:30:22] 2026-02-01 06:29:53,110 | INFO     | all job control threads have been joined
[2026-02-01 07:30:22] 2026-02-01 06:29:53,430 | INFO     | all data control threads have been joined
[2026-02-01 07:30:22] 2026-02-01 06:29:53,500 | INFO     | [job] queue monitor thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:53,501 | INFO     | [job] retrieve thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:53,502 | INFO     | [data] copytool_in thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:53,638 | INFO     | all payload control threads have been joined
[2026-02-01 07:30:22] 2026-02-01 06:29:53,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 07:30:22] 2026-02-01 06:29:53,985 | INFO     | [job] job monitor thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,116 | INFO     | [job] control thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,223 | INFO     | [payload] failed_post thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,397 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,436 | INFO     | [data] control thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,643 | INFO     | [payload] control thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,675 | INFO     | [payload] validate_post thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,689 | INFO     | [job] validate thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,824 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:54,858 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:55,767 | INFO     | [data] copytool_out thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:56,501 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:29:56,813 | INFO     | job.realtimelogging is not enabled
[2026-02-01 07:30:22] 2026-02-01 06:29:57,819 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 07:30:22] 2026-02-01 06:30:08,698 | INFO     | [monitor] cgroup control has ended
[2026-02-01 07:30:22] 2026-02-01 06:30:10,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640413218624)>', '<ExcThread(monitor, started 140640131495680)>']
[2026-02-01 07:30:22] 2026-02-01 06:30:15,828 | INFO     | all workflow threads have been joined
[2026-02-01 07:30:22] 2026-02-01 06:30:15,828 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 07:30:22] 2026-02-01 06:30:15,829 | INFO     | traces error code: 0
[2026-02-01 07:30:22] 2026-02-01 06:30:15,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 07:30:22] 2026-02-01 06:30:22,512 | INFO     | PID=2347408 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 07:30:22] 2026-02-01 06:30:22,512 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 07:30:22] 2026-02-01 06:30:22,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 07:30:22] 2026-02-01 06:30:22,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 07:30:22] 2026-02-01 06:30:22,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 07:30:22] 2026-02-01 06:30:22,512 | INFO     | [monitor] control thread has ended
[2026-02-01 07:30:22] 2026-02-01 06:30:22,551 [wrapper] ==== pilot stdout END ====
[2026-02-01 07:30:22] 2026-02-01 06:30:22,553 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 07:30:22] 2026-02-01 06:30:22,555 [wrapper] pilotpid: 2347408
[2026-02-01 07:30:22] 2026-02-01 06:30:22,557 [wrapper] Pilot exit status: 0
[2026-02-01 07:30:22] 2026-02-01 06:30:22,563 [wrapper] pandaids: 6978170896
[2026-02-01 07:30:22] 2026-02-01 06:30:22,576 [wrapper] cleanup supervisor_pilot 2356747 2347409
[2026-02-01 07:30:22] 2026-02-01 06:30:22,578 [wrapper] Test setup, not cleaning
[2026-02-01 07:30:22] 2026-02-01 06:30:22,580 [wrapper] apfmon messages muted
[2026-02-01 07:30:22] 2026-02-01 06:30:22,582 [wrapper] ==== wrapper stdout END ====
[2026-02-01 07:30:22] 2026-02-01 06:30:22,584 [wrapper] ==== wrapper stderr END ====
[2026-02-01 07:30:22]  *** Error codes and diagnostics ***
[2026-02-01 07:30:22]     "exeErrorCode": 0,
[2026-02-01 07:30:22]     "exeErrorDiag": "",
[2026-02-01 07:30:22]     "pilotErrorCode": 0,
[2026-02-01 07:30:22]     "pilotErrorDiag": "",
[2026-02-01 07:30:22]  *** Listing of results directory ***
[2026-02-01 07:30:22] total 662376
[2026-02-01 07:30:22] -rwx------ 1 boinc boinc     36322 Jan 23 08:45 runpilot2-wrapper.sh
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc    584422 Jan 23 08:46 pilot3.tar.gz
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc      5111 Jan 23 08:47 queuedata.json
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc       100 Feb  1 05:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 07:30:22] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 05:34 run_atlas
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc       105 Feb  1 05:34 job.xml
[2026-02-01 07:30:22] -rw-r--r-- 2 boinc boinc 493109155 Feb  1 05:34 EVNT.48310665._000101.pool.root.1
[2026-02-01 07:30:22] -rw-r--r-- 2 boinc boinc    597759 Feb  1 05:34 input.tar.gz
[2026-02-01 07:30:22] -rw-r--r-- 2 boinc boinc     15845 Feb  1 05:34 start_atlas.sh
[2026-02-01 07:30:22] drwxrwx--x 2 boinc boinc      4096 Feb  1 05:34 shared
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc         0 Feb  1 05:34 boinc_setup_complete
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc      6206 Feb  1 05:34 init_data.xml
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc         0 Feb  1 05:34 boinc_lockfile
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc      2523 Feb  1 05:34 pandaJob.out
[2026-02-01 07:30:22] -rw------- 1 boinc boinc   1010520 Feb  1 05:34 agis_schedconf.cvmfs.json
[2026-02-01 07:30:22] -rw------- 1 boinc boinc   1511668 Feb  1 05:34 agis_ddmendpoints.agis.ALL.json
[2026-02-01 07:30:22] -rw------- 1 boinc boinc       416 Feb  1 05:34 workernode_map.json
[2026-02-01 07:30:22] drwx------ 5 boinc boinc      4096 Feb  1 05:34 pilot3
[2026-02-01 07:30:22] -rw------- 1 boinc boinc 178740838 Feb  1 07:29 HITS.48310670._005008.pool.root.1
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc       530 Feb  1 07:29 boinc_task_state.xml
[2026-02-01 07:30:22] -rw------- 1 boinc boinc      1016 Feb  1 07:29 memory_monitor_summary.json
[2026-02-01 07:30:22] -rw------- 1 boinc boinc        95 Feb  1 07:29 pilot_heartbeat.json
[2026-02-01 07:30:22] -rw------- 1 boinc boinc    259701 Feb  1 07:29 log.48310670._005008.job.log.tgz.1
[2026-02-01 07:30:22] -rw------- 1 boinc boinc      6294 Feb  1 07:29 heartbeat.json
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc        27 Feb  1 07:30 wrapper_checkpoint.txt
[2026-02-01 07:30:22] -rw------- 1 boinc boinc       747 Feb  1 07:30 pilotlog.txt
[2026-02-01 07:30:22] -rw------- 1 boinc boinc    990100 Feb  1 07:30 log.48310670._005008.job.log.1
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc      8192 Feb  1 07:30 boinc_mmap_file
[2026-02-01 07:30:22] -rw------- 1 boinc boinc       357 Feb  1 07:30 output.list
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc       620 Feb  1 07:30 runtime_log
[2026-02-01 07:30:22] -rw------- 1 boinc boinc   1269760 Feb  1 07:30 result.tar.gz
[2026-02-01 07:30:22] -rw------- 1 boinc boinc       657 Feb  1 07:30 wl7NDmF2Q38n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdavKDm9mf48m.diag
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc      8896 Feb  1 07:30 runtime_log.err
[2026-02-01 07:30:22] -rw-r--r-- 1 boinc boinc     12150 Feb  1 07:30 stderr.txt
[2026-02-01 07:30:22] HITS file was successfully produced:
[2026-02-01 07:30:22] -rw------- 1 boinc boinc 178740838 Feb  1 07:29 shared/HITS.pool.root.1
[2026-02-01 07:30:22]  *** Contents of shared directory: ***
[2026-02-01 07:30:22] total 657952
[2026-02-01 07:30:22] -rw-r--r-- 2 boinc boinc 493109155 Feb  1 05:34 ATLAS.root_0
[2026-02-01 07:30:22] -rw-r--r-- 2 boinc boinc    597759 Feb  1 05:34 input.tar.gz
[2026-02-01 07:30:22] -rw-r--r-- 2 boinc boinc     15845 Feb  1 05:34 start_atlas.sh
[2026-02-01 07:30:22] -rw------- 1 boinc boinc 178740838 Feb  1 07:29 HITS.pool.root.1
[2026-02-01 07:30:22] -rw------- 1 boinc boinc   1269760 Feb  1 07:30 result.tar.gz
07:30:24 (2343382): run_atlas exited; CPU time 13379.886236
07:30:24 (2343382): called boinc_finish(0)

</stderr_txt>
]]>

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