Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:50:32 (4075914): wrapper (7.7.26015): starting
01:50:32 (4075914): wrapper: running run_atlas (--nthreads 4)
[2026-02-01 01:50:32] Arguments: --nthreads 4
[2026-02-01 01:50:32] Threads: 4
[2026-02-01 01:50:32] Checking for CVMFS
[2026-02-01 01:50:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 01:50:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 01:50:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 01:50:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 01:50:33] 2.13.1.0 1468929 4891 98488 155732 4 50 8202144 10240001 1822 130560 0 5688370 99.994 155334 334 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-01 01:50:33] CVMFS is ok
[2026-02-01 01:50:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 01:50:33] Checking for apptainer binary...
[2026-02-01 01:50:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 01:50:33] Running /usr/bin/apptainer --version
[2026-02-01 01:50:33] apptainer version 1.4.5
[2026-02-01 01:50:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 01:50:33] ellievl
[2026-02-01 01:50:33] apptainer works
[2026-02-01 01:50:33] Set ATHENA_PROC_NUMBER=4
[2026-02-01 01:50:33] Set ATHENA_CORE_NUMBER=4
[2026-02-01 01:50:33] Starting ATLAS job with PandaID=6994405134
[2026-02-01 01:50:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 03:13:12]  *** The last 200 lines of the pilot log: ***
[2026-02-01 03:13:12]  direct_access_lan=False
[2026-02-01 03:13:12]  direct_access_wan=False
[2026-02-01 03:13:12]  domain=
[2026-02-01 03:13:12]  filesize=275630
[2026-02-01 03:13:12]  filetype=log
[2026-02-01 03:13:12]  guid=b23a3803-0396-4dea-9923-8c027493905f
[2026-02-01 03:13:12]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-01 03:13:12]  is_altstaged=None
[2026-02-01 03:13:12]  is_tar=False
[2026-02-01 03:13:12]  lfn=log.48310589._006833.job.log.tgz.1
[2026-02-01 03:13:12]  mtime=0
[2026-02-01 03:13:12]  protocol_id=None
[2026-02-01 03:13:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-01 03:13:12]  replicas=None
[2026-02-01 03:13:12]  scope=mc23_13p6TeV
[2026-02-01 03:13:12]  status=None
[2026-02-01 03:13:12]  status_code=0
[2026-02-01 03:13:12]  storage_token=
[2026-02-01 03:13:12]  surl=/var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6994405134/log.48310589._006833.job.log.tgz.1
[2026-02-01 03:13:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/a0/log.48310589._006833.job.log.tgz.1
[2026-02-01 03:13:12]  workdir=None
[2026-02-01 03:13:12] ]
[2026-02-01 03:13:12] 2026-02-01 02:12:33,826 | INFO     | transferring file log.48310589._006833.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6994405134/log.48310589._006833.job.log.tgz.1 to /var/li
[2026-02-01 03:13:12] 2026-02-01 02:12:33,826 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6994405134/log.48310589._006833.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-01 03:13:12] 2026-02-01 02:12:33,857 | INFO     | adding to output.list: log.48310589._006833.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c2/a0/log.48310589._006833.job.log.tg
[2026-02-01 03:13:12] 2026-02-01 02:12:33,859 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-01 03:13:12] 2026-02-01 02:12:33,859 | INFO     | summary of transferred files:
[2026-02-01 03:13:12] 2026-02-01 02:12:33,859 | INFO     |  -- lfn=log.48310589._006833.job.log.tgz.1, status_code=0, status=transferred
[2026-02-01 03:13:12] 2026-02-01 02:12:33,860 | INFO     | stage-out finished correctly
[2026-02-01 03:13:12] 2026-02-01 02:12:34,109 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-01 03:13:12] 2026-02-01 02:12:34,308 | INFO     | job 6994405134 has state=finished
[2026-02-01 03:13:12] 2026-02-01 02:12:34,308 | INFO     | preparing for final server update for job 6994405134 in state='finished'
[2026-02-01 03:13:12] 2026-02-01 02:12:34,308 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6994405134/jobReport.json
[2026-02-01 03:13:12] 2026-02-01 02:12:34,310 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/2/workernode_map.json
[2026-02-01 03:13:12] 2026-02-01 02:12:34,311 | INFO     | this job has now completed (state=finished)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,311 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,311 | INFO     | log transfer has been attempted: DONE
[2026-02-01 03:13:12] 2026-02-01 02:12:34,311 | INFO     | job 6994405134 has finished - writing final server update
[2026-02-01 03:13:12] 2026-02-01 02:12:34,311 | INFO     | total number of processed events: 400 (read)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,314 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/2/PanDA_Pilot-6994405134/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,314 | INFO     | extracted standard info from prmon json
[2026-02-01 03:13:12] 2026-02-01 02:12:34,314 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 03:13:12] 2026-02-01 02:12:34,314 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 03:13:12] 2026-02-01 02:12:34,314 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 03:13:12] 2026-02-01 02:12:34,315 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | fitting pss+swap vs Time
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | sum of square deviations: 120605052.0
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | sum of deviations: -6146297780.000004
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | mean x: 1769909590.0
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | mean y: 2373435.4383561644
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | intersect: 90200845252.50383
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | chi2: 0.0558677417466217
[2026-02-01 03:13:12] 2026-02-01 02:12:34,316 | INFO     | current memory leak: -50.96 B/s (using 73 data points, chi2=0.06)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | could have reported an average CPU frequency of 3700 MHz (6 samples)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | ..............................
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . Timing measurements:
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . get job = 0 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . initial setup = 9 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . payload setup = 10 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . stage-in = 0 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . payload execution = 4868 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . stage-out = 0 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | . log creation = 0 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,317 | INFO     | ..............................
[2026-02-01 03:13:12] 2026-02-01 02:12:34,357 | INFO     | 
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | job summary report
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | --------------------------------------------------
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | PanDA job id: 6994405134
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | task id: 48310589
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | errors: (none)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | pilot state: finished 
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | transexitcode: 0
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | exeerrorcode: 0
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | exeerrordiag: 
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | exitcode: 0
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | exitmsg: OK
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | cpuconsumptiontime: 18351 s
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | nevents: 400
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | neventsw: 0
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | pid: 4084500
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | pgrp: 4084500
[2026-02-01 03:13:12] 2026-02-01 02:12:34,358 | INFO     | corecount: 4
[2026-02-01 03:13:12] 2026-02-01 02:12:34,359 | INFO     | event service: False
[2026-02-01 03:13:12] 2026-02-01 02:12:34,359 | INFO     | sizes: {0: 2278291, 11: 2278291, 4881: 2304521, 4883: 2313603, 4884: 2313741}
[2026-02-01 03:13:12] 2026-02-01 02:12:34,359 | INFO     | --------------------------------------------------
[2026-02-01 03:13:12] 2026-02-01 02:12:34,359 | INFO     | 
[2026-02-01 03:13:12] 2026-02-01 02:12:34,359 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/2
[2026-02-01 03:13:12] 2026-02-01 02:12:34,388 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,390 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 03:13:12] 2026-02-01 02:12:34,391 | INFO     | job 6994405134 has completed (purged errors)
[2026-02-01 03:13:12] 2026-02-01 02:12:34,391 | INFO     | overall cleanup function is called
[2026-02-01 03:13:12] 2026-02-01 02:12:35,399 | INFO     | --- collectZombieJob: --- 10, [4084500]
[2026-02-01 03:13:12] 2026-02-01 02:12:35,399 | INFO     | zombie collector waiting for pid 4084500
[2026-02-01 03:13:12] 2026-02-01 02:12:35,399 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 03:13:12] 2026-02-01 02:12:35,399 | INFO     | collected zombie processes
[2026-02-01 03:13:12] 2026-02-01 02:12:35,399 | INFO     | will attempt to kill all subprocesses of pid=4084500
[2026-02-01 03:13:12] 2026-02-01 02:12:35,609 | INFO     | process IDs to be killed: [4084500] (in reverse order)
[2026-02-01 03:13:12] 2026-02-01 02:12:35,703 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 03:13:12] 2026-02-01 02:12:35,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 03:13:12] 2026-02-01 02:12:35,709 | INFO     | did not find any defunct processes belonging to 4084500
[2026-02-01 03:13:12] 2026-02-01 02:12:35,714 | INFO     | did not find any defunct processes belonging to 4084500
[2026-02-01 03:13:12] 2026-02-01 02:12:35,714 | INFO     | ready for new job
[2026-02-01 03:13:12] 2026-02-01 02:12:35,715 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 03:13:12] 2026-02-01 02:12:35,717 | INFO     | **************************************
[2026-02-01 03:13:12] 2026-02-01 02:12:35,717 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 03:13:12] 2026-02-01 02:12:35,717 | INFO     | **************************************
[2026-02-01 03:13:12] 2026-02-01 02:12:35,718 | INFO     | 
[2026-02-01 03:13:12] 2026-02-01 02:12:35,718 | INFO     | pilot is running in a VM
[2026-02-01 03:13:12] 2026-02-01 02:12:35,718 | INFO     | architecture information:
[2026-02-01 03:13:12] 2026-02-01 02:12:35,719 | INFO     | executing command: cat /etc/os-release
[2026-02-01 03:13:12] 2026-02-01 02:12:35,738 | INFO     | cat /etc/os-release:
[2026-02-01 03:13:12] NAME="CentOS Linux"
[2026-02-01 03:13:12] VERSION="7 (Core)"
[2026-02-01 03:13:12] ID="centos"
[2026-02-01 03:13:12] ID_LIKE="rhel fedora"
[2026-02-01 03:13:12] VERSION_ID="7"
[2026-02-01 03:13:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 03:13:12] ANSI_COLOR="0;31"
[2026-02-01 03:13:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 03:13:12] HOME_URL="https://www.centos.org/"
[2026-02-01 03:13:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 03:13:12] 
[2026-02-01 03:13:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 03:13:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 03:13:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 03:13:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 03:13:12] 
[2026-02-01 03:13:12] 2026-02-01 02:12:35,739 | INFO     | **************************************
[2026-02-01 03:13:12] 2026-02-01 02:12:36,243 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/2
[2026-02-01 03:13:12] 2026-02-01 02:12:36,263 | INFO     | sufficient remaining disk space (47008710656 B)
[2026-02-01 03:13:12] 2026-02-01 02:12:36,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 03:13:12] 2026-02-01 02:12:36,264 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 03:13:12] 2026-02-01 02:12:36,264 | INFO     | update_server=False
[2026-02-01 03:13:12] 2026-02-01 02:12:36,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 03:13:12] 2026-02-01 02:12:36,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:13:12] 2026-02-01 02:12:36,265 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 03:13:12] 2026-02-01 02:12:36,265 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 03:13:12] 2026-02-01 02:12:36,266 | INFO     | aborting loop
[2026-02-01 03:13:12] 2026-02-01 02:12:36,852 | INFO     | all job control threads have been joined
[2026-02-01 03:13:12] 2026-02-01 02:12:36,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 03:13:12] 2026-02-01 02:12:37,129 | INFO     | all data control threads have been joined
[2026-02-01 03:13:12] 2026-02-01 02:12:37,270 | INFO     | [job] retrieve thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,272 | INFO     | [job] queue monitor thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,272 | INFO     | [job] job monitor thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,462 | INFO     | [job] validate thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,552 | INFO     | all payload control threads have been joined
[2026-02-01 03:13:12] 2026-02-01 02:12:37,591 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,597 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,762 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,836 | INFO     | [data] copytool_in thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:37,857 | INFO     | [job] control thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:38,121 | INFO     | [payload] validate_post thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:38,135 | INFO     | [data] control thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:38,213 | INFO     | [payload] failed_post thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:38,557 | INFO     | [payload] control thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:38,601 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:38,920 | INFO     | [data] copytool_out thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:12:40,273 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 03:13:12] 2026-02-01 02:13:05,775 | INFO     | [monitor] cgroup control has ended
[2026-02-01 03:13:12] 2026-02-01 02:13:05,921 | INFO     | PID=4079949 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 03:13:12] 2026-02-01 02:13:05,921 | INFO     | .. there are 3 such processes running
[2026-02-01 03:13:12] 2026-02-01 02:13:05,921 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 03:13:12] 2026-02-01 02:13:05,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 03:13:12] 2026-02-01 02:13:05,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 03:13:12] 2026-02-01 02:13:07,427 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133529156659008)>', '<ExcThread(monitor, started 133528419284736)>']
[2026-02-01 03:13:12] 2026-02-01 02:13:07,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 03:13:12] 2026-02-01 02:13:07,932 | INFO     | [monitor] control thread has ended
[2026-02-01 03:13:12] 2026-02-01 02:13:12,454 | INFO     | all workflow threads have been joined
[2026-02-01 03:13:12] 2026-02-01 02:13:12,454 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 03:13:12] 2026-02-01 02:13:12,454 | INFO     | traces error code: 0
[2026-02-01 03:13:12] 2026-02-01 02:13:12,454 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 03:13:12] 2026-02-01 02:13:12,561 [wrapper] ==== pilot stdout END ====
[2026-02-01 03:13:12] 2026-02-01 02:13:12,568 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 03:13:12] 2026-02-01 02:13:12,573 [wrapper] pilotpid: 4079949
[2026-02-01 03:13:12] 2026-02-01 02:13:12,580 [wrapper] Pilot exit status: 0
[2026-02-01 03:13:12] 2026-02-01 02:13:12,602 [wrapper] pandaids: 6994405134
[2026-02-01 03:13:12] 2026-02-01 02:13:12,673 [wrapper] cleanup supervisor_pilot 4124225 4079950
[2026-02-01 03:13:12] 2026-02-01 02:13:12,681 [wrapper] Test setup, not cleaning
[2026-02-01 03:13:12] 2026-02-01 02:13:12,687 [wrapper] apfmon messages muted
[2026-02-01 03:13:12] 2026-02-01 02:13:12,693 [wrapper] ==== wrapper stdout END ====
[2026-02-01 03:13:12] 2026-02-01 02:13:12,700 [wrapper] ==== wrapper stderr END ====
[2026-02-01 03:13:12]  *** Error codes and diagnostics ***
[2026-02-01 03:13:12]     "exeErrorCode": 0,
[2026-02-01 03:13:12]     "exeErrorDiag": "",
[2026-02-01 03:13:12]     "pilotErrorCode": 0,
[2026-02-01 03:13:12]     "pilotErrorDiag": "",
[2026-02-01 03:13:12]  *** Listing of results directory ***
[2026-02-01 03:13:12] insgesamt 667468
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc    584422 Jan 31 05:35 pilot3.tar.gz
[2026-02-01 03:13:12] -rwx------ 1 yeti boinc     36322 Jan 31 06:30 runpilot2-wrapper.sh
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc      5111 Jan 31 06:32 queuedata.json
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc       100 Feb  1 01:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 03:13:12] -rwxr-xr-x 1 yeti boinc      7986 Feb  1 01:50 run_atlas
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc       105 Feb  1 01:50 job.xml
[2026-02-01 03:13:12] -rw-r--r-- 2 yeti boinc 497553569 Feb  1 01:50 EVNT.48310585._000130.pool.root.1
[2026-02-01 03:13:12] -rw-r--r-- 2 yeti boinc     15845 Feb  1 01:50 start_atlas.sh
[2026-02-01 03:13:12] drwxrwx--x 2 yeti boinc      4096 Feb  1 01:50 shared
[2026-02-01 03:13:12] -rw-r--r-- 2 yeti boinc    597762 Feb  1 01:50 input.tar.gz
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc      6558 Feb  1 01:50 init_data.xml
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc         0 Feb  1 01:50 boinc_setup_complete
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc         0 Feb  1 01:50 boinc_lockfile
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc      2528 Feb  1 01:50 pandaJob.out
[2026-02-01 03:13:12] -rw------- 1 yeti boinc        52 Feb  1 01:50 setup.sh.local
[2026-02-01 03:13:12] -rw------- 1 yeti boinc   1010520 Feb  1 01:50 agis_schedconf.cvmfs.json
[2026-02-01 03:13:12] -rw------- 1 yeti boinc   1511668 Feb  1 01:50 agis_ddmendpoints.agis.ALL.json
[2026-02-01 03:13:12] -rw------- 1 yeti boinc       419 Feb  1 01:50 workernode_map.json
[2026-02-01 03:13:12] drwx------ 5 yeti boinc      4096 Feb  1 01:50 pilot3
[2026-02-01 03:13:12] -rw------- 1 yeti boinc 179975049 Feb  1 03:12 HITS.48310589._006833.pool.root.1
[2026-02-01 03:13:12] -rw------- 1 yeti boinc        95 Feb  1 03:12 pilot_heartbeat.json
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc       530 Feb  1 03:12 boinc_task_state.xml
[2026-02-01 03:13:12] -rw------- 1 yeti boinc      1021 Feb  1 03:12 memory_monitor_summary.json
[2026-02-01 03:13:12] -rw------- 1 yeti boinc    275630 Feb  1 03:12 log.48310589._006833.job.log.tgz.1
[2026-02-01 03:13:12] -rw------- 1 yeti boinc      6273 Feb  1 03:12 heartbeat.json
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc        27 Feb  1 03:12 wrapper_checkpoint.txt
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc      8192 Feb  1 03:12 boinc_mmap_file
[2026-02-01 03:13:12] -rw------- 1 yeti boinc      4895 Feb  1 03:13 pilotlog.txt
[2026-02-01 03:13:12] -rw------- 1 yeti boinc    726617 Feb  1 03:13 log.48310589._006833.job.log.1
[2026-02-01 03:13:12] -rw------- 1 yeti boinc       357 Feb  1 03:13 output.list
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc       620 Feb  1 03:13 runtime_log
[2026-02-01 03:13:12] -rw------- 1 yeti boinc   1024000 Feb  1 03:13 result.tar.gz
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc      9536 Feb  1 03:13 runtime_log.err
[2026-02-01 03:13:12] -rw------- 1 yeti boinc       637 Feb  1 03:13 8wlNDmfjI68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvFNKDm258Min.diag
[2026-02-01 03:13:12] -rw-r--r-- 1 yeti boinc     20684 Feb  1 03:13 stderr.txt
[2026-02-01 03:13:12] HITS file was successfully produced:
[2026-02-01 03:13:12] -rw------- 1 yeti boinc 179975049 Feb  1 03:12 shared/HITS.pool.root.1
[2026-02-01 03:13:12]  *** Contents of shared directory: ***
[2026-02-01 03:13:12] insgesamt 663264
[2026-02-01 03:13:12] -rw-r--r-- 2 yeti boinc 497553569 Feb  1 01:50 ATLAS.root_0
[2026-02-01 03:13:12] -rw-r--r-- 2 yeti boinc     15845 Feb  1 01:50 start_atlas.sh
[2026-02-01 03:13:12] -rw-r--r-- 2 yeti boinc    597762 Feb  1 01:50 input.tar.gz
[2026-02-01 03:13:12] -rw------- 1 yeti boinc 179975049 Feb  1 03:12 HITS.pool.root.1
[2026-02-01 03:13:12] -rw------- 1 yeti boinc   1024000 Feb  1 03:13 result.tar.gz
03:13:14 (4075914): run_atlas exited; CPU time 18556.586421
03:13:14 (4075914): called boinc_finish(0)

</stderr_txt>
]]>

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