Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:01:50 (2853926): wrapper (7.7.26015): starting
14:01:50 (2853926): wrapper: running run_atlas (--nthreads 4)
[2026-02-01 14:01:51] Arguments: --nthreads 4
[2026-02-01 14:01:51] Threads: 4
[2026-02-01 14:01:51] Checking for CVMFS
[2026-02-01 14:01:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 14:01:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 14:01:51] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 14:01:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 14:01:51] 2.9.2.0 1839157 5781 98396 155751 1 50 23567429 36864001 0 130560 0 2833329 99.988 181131 15634 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 14:01:51] CVMFS is ok
[2026-02-01 14:01:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 14:01:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 14:01:51] Further information can be found at the LHC@home message board.
[2026-02-01 14:01:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 14:01:51] Checking for apptainer binary...
[2026-02-01 14:01:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 14:01:51] Running /usr/bin/apptainer --version
[2026-02-01 14:01:51] apptainer version 1.4.1-1.1
[2026-02-01 14:01:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 14:01:51] thA332a
[2026-02-01 14:01:51] apptainer works
[2026-02-01 14:01:51] Set ATHENA_PROC_NUMBER=4
[2026-02-01 14:01:51] Set ATHENA_CORE_NUMBER=4
[2026-02-01 14:01:51] Starting ATLAS job with PandaID=6994861109
[2026-02-01 14:01:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 15:15:17]  *** The last 200 lines of the pilot log: ***
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | job 6994861109 has completed (purged errors)
[2026-02-01 15:15:17] 2026-02-01 14:14:45,289 | INFO     | overall cleanup function is called
[2026-02-01 15:15:17] 2026-02-01 14:14:46,296 | INFO     | --- collectZombieJob: --- 10, [2862553]
[2026-02-01 15:15:17] 2026-02-01 14:14:46,297 | INFO     | zombie collector waiting for pid 2862553
[2026-02-01 15:15:17] 2026-02-01 14:14:46,297 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 15:15:17] 2026-02-01 14:14:46,297 | INFO     | collected zombie processes
[2026-02-01 15:15:17] 2026-02-01 14:14:46,297 | INFO     | will attempt to kill all subprocesses of pid=2862553
[2026-02-01 15:15:17] 2026-02-01 14:14:46,339 | INFO     | process IDs to be killed: [2862553] (in reverse order)
[2026-02-01 15:15:17] 2026-02-01 14:14:46,373 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 15:15:17] 2026-02-01 14:14:46,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 15:15:17] 2026-02-01 14:14:46,375 | INFO     | did not find any defunct processes belonging to 2862553
[2026-02-01 15:15:17] 2026-02-01 14:14:46,377 | INFO     | did not find any defunct processes belonging to 2862553
[2026-02-01 15:15:17] 2026-02-01 14:14:46,377 | INFO     | ready for new job
[2026-02-01 15:15:17] 2026-02-01 14:14:46,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 15:15:17] 2026-02-01 14:14:46,377 | INFO     | **************************************
[2026-02-01 15:15:17] 2026-02-01 14:14:46,377 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 15:15:17] 2026-02-01 14:14:46,378 | INFO     | **************************************
[2026-02-01 15:15:17] 2026-02-01 14:14:46,378 | INFO     | 
[2026-02-01 15:15:17] 2026-02-01 14:14:46,378 | INFO     | architecture information:
[2026-02-01 15:15:17] 2026-02-01 14:14:46,378 | INFO     | executing command: cat /etc/os-release
[2026-02-01 15:15:17] 2026-02-01 14:14:46,393 | INFO     | cat /etc/os-release:
[2026-02-01 15:15:17] NAME="CentOS Linux"
[2026-02-01 15:15:17] VERSION="7 (Core)"
[2026-02-01 15:15:17] ID="centos"
[2026-02-01 15:15:17] ID_LIKE="rhel fedora"
[2026-02-01 15:15:17] VERSION_ID="7"
[2026-02-01 15:15:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 15:15:17] ANSI_COLOR="0;31"
[2026-02-01 15:15:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 15:15:17] HOME_URL="https://www.centos.org/"
[2026-02-01 15:15:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 15:15:17] 
[2026-02-01 15:15:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 15:15:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 15:15:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 15:15:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 15:15:17] 
[2026-02-01 15:15:17] 2026-02-01 14:14:46,393 | INFO     | **************************************
[2026-02-01 15:15:17] 2026-02-01 14:14:46,896 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | INFO     | sufficient remaining disk space (333137838080 B)
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | INFO     | update_server=False
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 15:15:17] 2026-02-01 14:14:46,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 15:15:17] 2026-02-01 14:14:46,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 15:15:17] 2026-02-01 14:14:47,138 | INFO     | all payload control threads have been joined
[2026-02-01 15:15:17] 2026-02-01 14:14:47,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 15:15:17] 2026-02-01 14:14:47,381 | INFO     | aborting loop
[2026-02-01 15:15:17] 2026-02-01 14:14:47,395 | INFO     | all data control threads have been joined
[2026-02-01 15:15:17] 2026-02-01 14:14:47,908 | INFO     | all job control threads have been joined
[2026-02-01 15:15:17] 2026-02-01 14:14:47,920 | INFO     | [job] queue monitor thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:47,920 | INFO     | [job] retrieve thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:47,943 | INFO     | [data] copytool_in thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,144 | INFO     | [payload] control thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,387 | INFO     | [job] job monitor thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,400 | INFO     | [data] control thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,757 | INFO     | [payload] failed_post thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,763 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,914 | INFO     | [job] control thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:48,920 | INFO     | [data] copytool_out thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:49,117 | INFO     | [job] validate thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:49,220 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:49,239 | INFO     | [payload] validate_post thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:49,302 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:50,922 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:14:57,316 | INFO     | job.realtimelogging is not enabled
[2026-02-01 15:15:17] 2026-02-01 14:14:58,322 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 15:15:17] 2026-02-01 14:15:09,509 | INFO     | [monitor] cgroup control has ended
[2026-02-01 15:15:17] 2026-02-01 14:15:10,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140228764096320)>', '<ExcThread(monitor, started 140227972679424)>']
[2026-02-01 15:15:17] 2026-02-01 14:15:15,970 | INFO     | all workflow threads have been joined
[2026-02-01 15:15:17] 2026-02-01 14:15:15,971 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 15:15:17] 2026-02-01 14:15:15,971 | INFO     | traces error code: 0
[2026-02-01 15:15:17] 2026-02-01 14:15:15,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 15:15:17] 2026-02-01 14:15:16,933 | INFO     | PID=2858038 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 15:15:17] 2026-02-01 14:15:16,933 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 15:15:17] 2026-02-01 14:15:16,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 15:15:17] 2026-02-01 14:15:16,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 15:15:17] 2026-02-01 14:15:16,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 15:15:17] 2026-02-01 14:15:16,933 | INFO     | [monitor] control thread has ended
[2026-02-01 15:15:17] 2026-02-01 14:15:17,010 [wrapper] ==== pilot stdout END ====
[2026-02-01 15:15:17] 2026-02-01 14:15:17,014 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 15:15:17] 2026-02-01 14:15:17,018 [wrapper] pilotpid: 2858038
[2026-02-01 15:15:17] 2026-02-01 14:15:17,023 [wrapper] Pilot exit status: 0
[2026-02-01 15:15:17] 2026-02-01 14:15:17,035 [wrapper] pandaids: 6994861109
[2026-02-01 15:15:17] 2026-02-01 14:15:17,057 [wrapper] cleanup supervisor_pilot 2867641 2858039
[2026-02-01 15:15:17] 2026-02-01 14:15:17,061 [wrapper] Test setup, not cleaning
[2026-02-01 15:15:17] 2026-02-01 14:15:17,066 [wrapper] apfmon messages muted
[2026-02-01 15:15:17] 2026-02-01 14:15:17,070 [wrapper] ==== wrapper stdout END ====
[2026-02-01 15:15:17] 2026-02-01 14:15:17,074 [wrapper] ==== wrapper stderr END ====
[2026-02-01 15:15:17]  *** Error codes and diagnostics ***
[2026-02-01 15:15:17]     "exeErrorCode": 0,
[2026-02-01 15:15:17]     "exeErrorDiag": "",
[2026-02-01 15:15:17]     "pilotErrorCode": 0,
[2026-02-01 15:15:17]     "pilotErrorDiag": "",
[2026-02-01 15:15:17]  *** Listing of results directory ***
[2026-02-01 15:15:17] total 664508
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc    584422 Jan 31 17:25 pilot3.tar.gz
[2026-02-01 15:15:17] -rwx------ 1 boinc boinc     36322 Jan 31 17:25 runpilot2-wrapper.sh
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc      5111 Jan 31 17:25 queuedata.json
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc       100 Feb  1 14:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 15:15:17] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 14:01 run_atlas
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc       105 Feb  1 14:01 job.xml
[2026-02-01 15:15:17] -rw-r--r-- 2 boinc boinc 494894460 Feb  1 14:01 EVNT.48317929._000163.pool.root.1
[2026-02-01 15:15:17] -rw-r--r-- 2 boinc boinc    597757 Feb  1 14:01 input.tar.gz
[2026-02-01 15:15:17] -rw-r--r-- 2 boinc boinc     15845 Feb  1 14:01 start_atlas.sh
[2026-02-01 15:15:17] drwxrwx--x 2 boinc boinc      4096 Feb  1 14:01 shared
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc         0 Feb  1 14:01 boinc_setup_complete
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc      6370 Feb  1 14:01 init_data.xml
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc         0 Feb  1 14:01 boinc_lockfile
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc      2511 Feb  1 14:01 pandaJob.out
[2026-02-01 15:15:17] -rw------- 1 boinc boinc   1010528 Feb  1 14:01 agis_schedconf.cvmfs.json
[2026-02-01 15:15:17] -rw------- 1 boinc boinc   1511668 Feb  1 14:01 agis_ddmendpoints.agis.ALL.json
[2026-02-01 15:15:17] -rw------- 1 boinc boinc       420 Feb  1 14:02 workernode_map.json
[2026-02-01 15:15:17] drwx------ 5 boinc boinc      4096 Feb  1 14:02 pilot3
[2026-02-01 15:15:17] -rw------- 1 boinc boinc        95 Feb  1 15:14 pilot_heartbeat.json
[2026-02-01 15:15:17] -rw------- 1 boinc boinc 179766375 Feb  1 15:14 HITS.48317931._009157.pool.root.1
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc       530 Feb  1 15:14 boinc_task_state.xml
[2026-02-01 15:15:17] -rw------- 1 boinc boinc      1020 Feb  1 15:14 memory_monitor_summary.json
[2026-02-01 15:15:17] -rw------- 1 boinc boinc    284243 Feb  1 15:14 log.48317931._009157.job.log.tgz.1
[2026-02-01 15:15:17] -rw------- 1 boinc boinc      6302 Feb  1 15:14 heartbeat.json
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc        27 Feb  1 15:14 wrapper_checkpoint.txt
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc      8192 Feb  1 15:14 boinc_mmap_file
[2026-02-01 15:15:17] -rw------- 1 boinc boinc       747 Feb  1 15:15 pilotlog.txt
[2026-02-01 15:15:17] -rw------- 1 boinc boinc    645535 Feb  1 15:15 log.48317931._009157.job.log.1
[2026-02-01 15:15:17] -rw------- 1 boinc boinc       357 Feb  1 15:15 output.list
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc       620 Feb  1 15:15 runtime_log
[2026-02-01 15:15:17] -rw------- 1 boinc boinc    952320 Feb  1 15:15 result.tar.gz
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc      8901 Feb  1 15:15 runtime_log.err
[2026-02-01 15:15:17] -rw------- 1 boinc boinc       658 Feb  1 15:15 1ZmKDm3xS68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmwNOKDmXlOxan.diag
[2026-02-01 15:15:17] -rw-r--r-- 1 boinc boinc     12735 Feb  1 15:15 stderr.txt
[2026-02-01 15:15:17] HITS file was successfully produced:
[2026-02-01 15:15:17] -rw------- 1 boinc boinc 179766375 Feb  1 15:14 shared/HITS.pool.root.1
[2026-02-01 15:15:17]  *** Contents of shared directory: ***
[2026-02-01 15:15:17] total 660392
[2026-02-01 15:15:17] -rw-r--r-- 2 boinc boinc 494894460 Feb  1 14:01 ATLAS.root_0
[2026-02-01 15:15:17] -rw-r--r-- 2 boinc boinc    597757 Feb  1 14:01 input.tar.gz
[2026-02-01 15:15:17] -rw-r--r-- 2 boinc boinc     15845 Feb  1 14:01 start_atlas.sh
[2026-02-01 15:15:17] -rw------- 1 boinc boinc 179766375 Feb  1 15:14 HITS.pool.root.1
[2026-02-01 15:15:17] -rw------- 1 boinc boinc    952320 Feb  1 15:15 result.tar.gz
15:15:18 (2853926): run_atlas exited; CPU time 16489.810102
15:15:18 (2853926): called boinc_finish(0)

</stderr_txt>
]]>

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