Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:35:55 (1912729): wrapper (7.7.26015): starting
20:35:55 (1912729): wrapper: running run_atlas (--nthreads 4)
[2026-02-01 20:35:55] Arguments: --nthreads 4
[2026-02-01 20:35:55] Threads: 4
[2026-02-01 20:35:55] Checking for CVMFS
[2026-02-01 20:35:55] No cvmfs_config command found, will try listing directly
[2026-02-01 20:35:55] CVMFS is ok
[2026-02-01 20:35:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 20:35:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 20:35:55] Further information can be found at the LHC@home message board.
[2026-02-01 20:35:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 20:35:55] Checking for apptainer binary...
[2026-02-01 20:35:55] which: no apptainer in ((null))
[2026-02-01 20:35:55] apptainer is not installed, using version from CVMFS
[2026-02-01 20:35:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 20:35:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-02-01 20:35:55] apptainer works
[2026-02-01 20:35:55] Set ATHENA_PROC_NUMBER=4
[2026-02-01 20:35:55] Set ATHENA_CORE_NUMBER=4
[2026-02-01 20:35:55] Starting ATLAS job with PandaID=6994779157
[2026-02-01 20:35:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 23:20:05]  *** The last 200 lines of the pilot log: ***
[2026-02-01 23:20:05] 2026-02-01 22:17:42,315 | INFO     | total number of processed events: 400 (read)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,340 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6994779157/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,341 | INFO     | extracted standard info from prmon json
[2026-02-01 23:20:05] 2026-02-01 22:17:42,341 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 23:20:05] 2026-02-01 22:17:42,341 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 23:20:05] 2026-02-01 22:17:42,342 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 23:20:05] 2026-02-01 22:17:42,342 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 23:20:05] 2026-02-01 22:17:42,345 | INFO     | fitting pss+swap vs Time
[2026-02-01 23:20:05] 2026-02-01 22:17:42,345 | INFO     | sum of square deviations: 1246386160.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,346 | INFO     | sum of deviations: -4835937870.000003
[2026-02-01 23:20:05] 2026-02-01 22:17:42,346 | INFO     | mean x: 1769979423.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,347 | INFO     | mean y: 2318961.2075471696
[2026-02-01 23:20:05] 2026-02-01 22:17:42,347 | INFO     | intersect: 6869781707.108428
[2026-02-01 23:20:05] 2026-02-01 22:17:42,347 | INFO     | chi2: 1.9927061021507657
[2026-02-01 23:20:05] 2026-02-01 22:17:42,347 | INFO     | sum of square deviations: 1132458442.5
[2026-02-01 23:20:05] 2026-02-01 22:17:42,348 | INFO     | sum of deviations: 4426538627.000002
[2026-02-01 23:20:05] 2026-02-01 22:17:42,348 | INFO     | mean x: 1769979270.5
[2026-02-01 23:20:05] 2026-02-01 22:17:42,348 | INFO     | mean y: 2331051.064935065
[2026-02-01 23:20:05] 2026-02-01 22:17:42,349 | INFO     | intersect: -6916140581.820203
[2026-02-01 23:20:05] 2026-02-01 22:17:42,349 | INFO     | chi2: 1.33151994761312
[2026-02-01 23:20:05] 2026-02-01 22:17:42,349 | INFO     | current chi2=1.33151994761312 (change=33.180314639675906 %)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,349 | INFO     | sum of square deviations: 1025693650.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,350 | INFO     | sum of deviations: 4474903025.999998
[2026-02-01 23:20:05] 2026-02-01 22:17:42,350 | INFO     | mean x: 1769979118.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,350 | INFO     | mean y: 2331120.2147651007
[2026-02-01 23:20:05] 2026-02-01 22:17:42,350 | INFO     | intersect: -7719745458.006234
[2026-02-01 23:20:05] 2026-02-01 22:17:42,351 | INFO     | chi2: 1.332614735761214
[2026-02-01 23:20:05] 2026-02-01 22:17:42,351 | INFO     | current chi2=1.332614735761214 (change=-0.08222093480885083 %)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,351 | INFO     | right removable region: 148
[2026-02-01 23:20:05] 2026-02-01 22:17:42,351 | INFO     | sum of square deviations: 1132458442.5
[2026-02-01 23:20:05] 2026-02-01 22:17:42,352 | INFO     | sum of deviations: -23420434062.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,352 | INFO     | mean x: 1769979575.5
[2026-02-01 23:20:05] 2026-02-01 22:17:42,352 | INFO     | mean y: 2343389.922077922
[2026-02-01 23:20:05] 2026-02-01 22:17:42,352 | INFO     | intersect: 36607386350.76742
[2026-02-01 23:20:05] 2026-02-01 22:17:42,353 | INFO     | chi2: 0.7161493251417973
[2026-02-01 23:20:05] 2026-02-01 22:17:42,353 | INFO     | current chi2=0.7161493251417973 (change=64.0614677513737 %)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,353 | INFO     | sum of square deviations: 1025693650.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,354 | INFO     | sum of deviations: -21676540625.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,354 | INFO     | mean x: 1769979728.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,354 | INFO     | mean y: 2340890.348993289
[2026-02-01 23:20:05] 2026-02-01 22:17:42,354 | INFO     | intersect: 37408283180.640495
[2026-02-01 23:20:05] 2026-02-01 22:17:42,354 | INFO     | chi2: 0.716391910977685
[2026-02-01 23:20:05] 2026-02-01 22:17:42,355 | INFO     | current chi2=0.716391910977685 (change=-0.03387363883078747 %)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,355 | INFO     | left removable region: 20
[2026-02-01 23:20:05] 2026-02-01 22:17:42,355 | INFO     | sum of square deviations: 650252192.0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,356 | INFO     | sum of deviations: -8050604228.5
[2026-02-01 23:20:05] 2026-02-01 22:17:42,356 | INFO     | mean x: 1769979697.5
[2026-02-01 23:20:05] 2026-02-01 22:17:42,356 | INFO     | mean y: 2348694.1640625
[2026-02-01 23:20:05] 2026-02-01 22:17:42,356 | INFO     | intersect: 21916009597.36737
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | chi2: 0.029092445380618524
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | current memory leak: -12.38 B/s (using 128 data points, chi2=0.03)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | could have reported an average CPU frequency of 2682 MHz (9 samples)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | ..............................
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | . Timing measurements:
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | . get job = 0 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,357 | INFO     | . initial setup = 8 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,358 | INFO     | . payload setup = 8 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,358 | INFO     | . stage-in = 0 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,358 | INFO     | . payload execution = 9660 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,358 | INFO     | . stage-out = 0 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,358 | INFO     | . log creation = 0 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,358 | INFO     | ..............................
[2026-02-01 23:20:05] 2026-02-01 22:17:42,453 | INFO     | 
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | job summary report
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | --------------------------------------------------
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | PanDA job id: 6994779157
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | task id: 48317872
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | errors: (none)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | pilot state: finished 
[2026-02-01 23:20:05] 2026-02-01 22:17:42,454 | INFO     | transexitcode: 0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | exeerrorcode: 0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | exeerrordiag: 
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | exitcode: 0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | exitmsg: OK
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | cpuconsumptiontime: 36975 s
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | nevents: 400
[2026-02-01 23:20:05] 2026-02-01 22:17:42,455 | INFO     | neventsw: 0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | pid: 1921822
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | pgrp: 1921822
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | corecount: 4
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | event service: False
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | sizes: {0: 2277848, 1: 2278309, 11: 2278309, 9673: 2307271, 9674: 2316293, 9675: 2316735}
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | --------------------------------------------------
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | 
[2026-02-01 23:20:05] 2026-02-01 22:17:42,456 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2026-02-01 23:20:05] 2026-02-01 22:17:42,487 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,487 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,487 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,487 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,489 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,489 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 23:20:05] 2026-02-01 22:17:42,489 | INFO     | job 6994779157 has completed (purged errors)
[2026-02-01 23:20:05] 2026-02-01 22:17:42,489 | INFO     | overall cleanup function is called
[2026-02-01 23:20:05] 2026-02-01 22:17:43,498 | INFO     | --- collectZombieJob: --- 10, [1921822]
[2026-02-01 23:20:05] 2026-02-01 22:17:43,499 | INFO     | zombie collector waiting for pid 1921822
[2026-02-01 23:20:05] 2026-02-01 22:17:43,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 23:20:05] 2026-02-01 22:17:43,499 | INFO     | collected zombie processes
[2026-02-01 23:20:05] 2026-02-01 22:17:43,499 | INFO     | will attempt to kill all subprocesses of pid=1921822
[2026-02-01 23:20:05] 2026-02-01 22:17:44,324 | INFO     | process IDs to be killed: [1921822] (in reverse order)
[2026-02-01 23:20:05] 2026-02-01 22:17:44,589 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 23:20:05] 2026-02-01 22:17:44,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 23:20:05] 2026-02-01 22:17:44,620 | INFO     | did not find any defunct processes belonging to 1921822
[2026-02-01 23:20:05] 2026-02-01 22:17:44,648 | INFO     | did not find any defunct processes belonging to 1921822
[2026-02-01 23:20:05] 2026-02-01 22:17:44,648 | INFO     | ready for new job
[2026-02-01 23:20:05] 2026-02-01 22:17:44,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 23:20:05] 2026-02-01 22:17:44,651 | INFO     | **************************************
[2026-02-01 23:20:05] 2026-02-01 22:17:44,651 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 23:20:05] 2026-02-01 22:17:44,651 | INFO     | **************************************
[2026-02-01 23:20:05] 2026-02-01 22:17:44,651 | INFO     | 
[2026-02-01 23:20:05] 2026-02-01 22:17:44,659 | INFO     | architecture information:
[2026-02-01 23:20:05] 2026-02-01 22:17:44,659 | INFO     | executing command: cat /etc/os-release
[2026-02-01 23:20:05] 2026-02-01 22:17:44,684 | INFO     | cat /etc/os-release:
[2026-02-01 23:20:05] NAME="CentOS Linux"
[2026-02-01 23:20:05] VERSION="7 (Core)"
[2026-02-01 23:20:05] ID="centos"
[2026-02-01 23:20:05] ID_LIKE="rhel fedora"
[2026-02-01 23:20:05] VERSION_ID="7"
[2026-02-01 23:20:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 23:20:05] ANSI_COLOR="0;31"
[2026-02-01 23:20:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 23:20:05] HOME_URL="https://www.centos.org/"
[2026-02-01 23:20:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 23:20:05] 
[2026-02-01 23:20:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 23:20:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 23:20:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 23:20:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 23:20:05] 
[2026-02-01 23:20:05] 2026-02-01 22:17:44,685 | INFO     | **************************************
[2026-02-01 23:20:05] 2026-02-01 22:17:45,188 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2026-02-01 23:20:05] 2026-02-01 22:17:45,217 | INFO     | sufficient remaining disk space (3245671972864 B)
[2026-02-01 23:20:05] 2026-02-01 22:17:45,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 23:20:05] 2026-02-01 22:17:45,217 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 23:20:05] 2026-02-01 22:17:45,217 | INFO     | update_server=False
[2026-02-01 23:20:05] 2026-02-01 22:17:45,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 23:20:05] 2026-02-01 22:17:45,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 23:20:05] 2026-02-01 22:17:45,585 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 23:20:05] 2026-02-01 22:17:45,585 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 23:20:05] 2026-02-01 22:17:45,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 23:20:05] 2026-02-01 22:17:45,585 | INFO     | will abort loop
[2026-02-01 23:20:05] 2026-02-01 22:17:45,688 | INFO     | all data control threads have been joined
[2026-02-01 23:20:05] 2026-02-01 22:17:46,007 | INFO     | all job control threads have been joined
[2026-02-01 23:20:05] 2026-02-01 22:17:46,223 | INFO     | [job] retrieve thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:46,229 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:46,365 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:46,472 | INFO     | [payload] validate_post thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:46,591 | INFO     | [job] job monitor thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:46,683 | INFO     | all payload control threads have been joined
[2026-02-01 23:20:05] 2026-02-01 22:17:46,693 | INFO     | [data] control thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:46,999 | INFO     | [data] copytool_in thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:47,012 | INFO     | [job] control thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:47,223 | INFO     | [data] copytool_out thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:47,328 | INFO     | [payload] failed_post thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:47,465 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 23:20:05] 2026-02-01 22:17:47,500 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:47,500 | INFO     | [job] validate thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:47,689 | INFO     | [payload] control thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:48,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 23:20:05] 2026-02-01 22:17:48,470 | INFO     | [job] queue monitor thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:52,319 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:17:55,870 | INFO     | job.realtimelogging is not enabled
[2026-02-01 23:20:05] 2026-02-01 22:17:56,875 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 23:20:05] 2026-02-01 22:18:15,535 | INFO     | PID=1916770 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 23:20:05] 2026-02-01 22:18:15,536 | INFO     | .. there are 10 such processes running
[2026-02-01 23:20:05] 2026-02-01 22:18:15,536 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 23:20:05] 2026-02-01 22:18:15,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 23:20:05] 2026-02-01 22:18:15,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 23:20:05] 2026-02-01 22:18:32,146 | INFO     | [monitor] cgroup control has ended
[2026-02-01 23:20:05] 2026-02-01 22:18:32,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22598939207488)>', '<ExcThread(monitor, started 22598494689024)>']
[2026-02-01 23:20:05] 2026-02-01 22:18:32,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 23:20:05] 2026-02-01 22:18:32,622 | INFO     | [monitor] control thread has ended
[2026-02-01 23:20:05] 2026-02-01 22:18:37,602 | INFO     | all workflow threads have been joined
[2026-02-01 23:20:05] 2026-02-01 22:18:37,603 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 23:20:05] 2026-02-01 22:18:37,603 | INFO     | traces error code: 0
[2026-02-01 23:20:05] 2026-02-01 22:18:37,603 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 23:20:05] 2026-02-01 22:18:37,771 [wrapper] ==== pilot stdout END ====
[2026-02-01 23:20:05] 2026-02-01 22:18:37,776 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 23:20:05] 2026-02-01 22:18:37,780 [wrapper] pilotpid: 1916770
[2026-02-01 23:20:05] 2026-02-01 22:18:37,783 [wrapper] Pilot exit status: 0
[2026-02-01 23:20:05] 2026-02-01 22:18:37,799 [wrapper] pandaids: 6994779157
[2026-02-01 23:20:05] 2026-02-01 22:18:37,974 [wrapper] cleanup supervisor_pilot 2130531 1916771
[2026-02-01 23:20:05] 2026-02-01 22:18:37,979 [wrapper] Test setup, not cleaning
[2026-02-01 23:20:05] 2026-02-01 22:18:37,983 [wrapper] apfmon messages muted
[2026-02-01 23:20:05] 2026-02-01 22:18:37,986 [wrapper] ==== wrapper stdout END ====
[2026-02-01 23:20:05] 2026-02-01 22:18:37,989 [wrapper] ==== wrapper stderr END ====
[2026-02-01 23:20:05]  *** Error codes and diagnostics ***
[2026-02-01 23:20:05]     "exeErrorCode": 0,
[2026-02-01 23:20:05]     "exeErrorDiag": "",
[2026-02-01 23:20:05]     "pilotErrorCode": 0,
[2026-02-01 23:20:05]     "pilotErrorDiag": "",
[2026-02-01 23:20:05]  *** Listing of results directory ***
[2026-02-01 23:20:05] total 668716
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc      5111 Jan 31 17:04 queuedata.json
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc    584422 Jan 31 17:04 pilot3.tar.gz
[2026-02-01 23:20:05] -rwx------ 1 boinc boinc     36322 Jan 31 17:04 runpilot2-wrapper.sh
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc       100 Feb  1 20:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 23:20:05] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 20:35 run_atlas
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc       105 Feb  1 20:35 job.xml
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc      6692 Feb  1 20:35 init_data.xml
[2026-02-01 23:20:05] -rw-r--r-- 2 boinc boinc 490021989 Feb  1 20:35 EVNT.48317869._000282.pool.root.1
[2026-02-01 23:20:05] -rw-r--r-- 2 boinc boinc     15845 Feb  1 20:35 start_atlas.sh
[2026-02-01 23:20:05] drwxrwx--x 2 boinc boinc      4096 Feb  1 20:35 shared
[2026-02-01 23:20:05] -rw-r--r-- 2 boinc boinc    597755 Feb  1 20:35 input.tar.gz
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc         0 Feb  1 20:35 boinc_lockfile
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc      2518 Feb  1 20:35 pandaJob.out
[2026-02-01 23:20:05] -rw------- 1 boinc boinc   1009765 Feb  1 20:36 agis_schedconf.cvmfs.json
[2026-02-01 23:20:05] -rw------- 1 boinc boinc   1511668 Feb  1 20:36 agis_ddmendpoints.agis.ALL.json
[2026-02-01 23:20:05] -rw------- 1 boinc boinc       444 Feb  1 20:36 workernode_map.json
[2026-02-01 23:20:05] drwx------ 5 boinc boinc      4096 Feb  1 20:36 pilot3
[2026-02-01 23:20:05] -rw------- 1 boinc boinc 187396631 Feb  1 23:17 HITS.48317872._015505.pool.root.1
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc       529 Feb  1 23:17 boinc_task_state.xml
[2026-02-01 23:20:05] -rw------- 1 boinc boinc        95 Feb  1 23:17 pilot_heartbeat.json
[2026-02-01 23:20:05] -rw------- 1 boinc boinc      1027 Feb  1 23:17 memory_monitor_summary.json
[2026-02-01 23:20:05] -rw------- 1 boinc boinc    346187 Feb  1 23:17 log.48317872._015505.job.log.tgz.1
[2026-02-01 23:20:05] -rw------- 1 boinc boinc      6370 Feb  1 23:17 heartbeat.json
[2026-02-01 23:20:05] -rw------- 1 boinc boinc      5090 Feb  1 23:18 pilotlog.txt
[2026-02-01 23:20:05] -rw------- 1 boinc boinc   1354706 Feb  1 23:18 log.48317872._015505.job.log.1
[2026-02-01 23:20:05] -rw------- 1 boinc boinc       357 Feb  1 23:18 output.list
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc       620 Feb  1 23:18 runtime_log
[2026-02-01 23:20:05] -rw------- 1 boinc boinc   1720320 Feb  1 23:18 result.tar.gz
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc      9221 Feb  1 23:18 runtime_log.err
[2026-02-01 23:20:05] -rw------- 1 boinc boinc       663 Feb  1 23:18 8EYLDmQdS68n9Rq4apOajLDm4fhM0noT9bVooX4SDmBtNKDmFLodQm.diag
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc        27 Feb  1 23:19 wrapper_checkpoint.txt
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc      8192 Feb  1 23:20 boinc_mmap_file
[2026-02-01 23:20:05] -rw-r--r-- 1 boinc boinc     20802 Feb  1 23:20 stderr.txt
[2026-02-01 23:20:05] HITS file was successfully produced:
[2026-02-01 23:20:05] -rw------- 1 boinc boinc 187396631 Feb  1 23:17 shared/HITS.pool.root.1
[2026-02-01 23:20:05]  *** Contents of shared directory: ***
[2026-02-01 23:20:05] total 663836
[2026-02-01 23:20:05] -rw-r--r-- 2 boinc boinc 490021989 Feb  1 20:35 ATLAS.root_0
[2026-02-01 23:20:05] -rw-r--r-- 2 boinc boinc     15845 Feb  1 20:35 start_atlas.sh
[2026-02-01 23:20:05] -rw-r--r-- 2 boinc boinc    597755 Feb  1 20:35 input.tar.gz
[2026-02-01 23:20:05] -rw------- 1 boinc boinc 187396631 Feb  1 23:17 HITS.pool.root.1
[2026-02-01 23:20:05] -rw------- 1 boinc boinc   1720320 Feb  1 23:18 result.tar.gz
23:20:06 (1912729): run_atlas exited; CPU time 37686.718111
23:20:06 (1912729): called boinc_finish(0)

</stderr_txt>
]]>

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