Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:53:33 (13182): wrapper (7.7.26015): starting
00:53:33 (13182): wrapper: running run_atlas (--nthreads 8)
[2026-02-01 00:53:33] Arguments: --nthreads 8
[2026-02-01 00:53:33] Threads: 8
[2026-02-01 00:53:33] Checking for CVMFS
[2026-02-01 00:53:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 00:53:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 00:53:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 00:53:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 00:53:37] 2.11.2.0 23754 67780 136312 155731 0 54 23643590 25165824 1027 130560 0 16128321 99.752 16854914 3018 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-02-01 00:53:37] CVMFS is ok
[2026-02-01 00:53:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 00:53:37] Checking for apptainer binary...
[2026-02-01 00:53:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 00:53:37] Running /usr/bin/apptainer --version
[2026-02-01 00:53:37] apptainer version 1.3.2-1.el7
[2026-02-01 00:53:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 00:53:49] cg-vwn493.simple-grid.lan
[2026-02-01 00:53:49] apptainer works
[2026-02-01 00:53:49] Set ATHENA_PROC_NUMBER=8
[2026-02-01 00:53:49] Set ATHENA_CORE_NUMBER=8
[2026-02-01 00:53:49] Starting ATLAS job with PandaID=6991150629
[2026-02-01 00:53:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 05:33:22]  *** The last 200 lines of the pilot log: ***
[2026-02-01 05:33:23] 2026-02-01 04:32:26,811 | INFO     | total number of processed events: 400 (read)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,814 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6991150629/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,814 | INFO     | extracted standard info from prmon json
[2026-02-01 05:33:23] 2026-02-01 04:32:26,815 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 05:33:23] 2026-02-01 04:32:26,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 05:33:23] 2026-02-01 04:32:26,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 05:33:23] 2026-02-01 04:32:26,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 05:33:23] 2026-02-01 04:32:26,820 | INFO     | fitting pss+swap vs Time
[2026-02-01 05:33:23] 2026-02-01 04:32:26,821 | INFO     | sum of square deviations: 5640782972.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,824 | INFO     | sum of deviations: 140529526591.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,824 | INFO     | mean x: 1769912302.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,824 | INFO     | mean y: 2428476.0570342205
[2026-02-01 05:33:23] 2026-02-01 04:32:26,824 | INFO     | intersect: -44091616471.65328
[2026-02-01 05:33:23] 2026-02-01 04:32:26,825 | INFO     | chi2: 8.523126298633933
[2026-02-01 05:33:23] 2026-02-01 04:32:26,825 | INFO     | sum of square deviations: 5325139844.5
[2026-02-01 05:33:23] 2026-02-01 04:32:26,828 | INFO     | sum of deviations: 155130690758.00003
[2026-02-01 05:33:23] 2026-02-01 04:32:26,828 | INFO     | mean x: 1769912149.5
[2026-02-01 05:33:23] 2026-02-01 04:32:26,828 | INFO     | mean y: 2435399.9379844964
[2026-02-01 05:33:23] 2026-02-01 04:32:26,828 | INFO     | intersect: -51558218845.88341
[2026-02-01 05:33:23] 2026-02-01 04:32:26,829 | INFO     | chi2: 7.813710933246556
[2026-02-01 05:33:23] 2026-02-01 04:32:26,829 | INFO     | current chi2=7.813710933246556 (change=8.323417259475324 %)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,829 | INFO     | right removable region: 257
[2026-02-01 05:33:23] 2026-02-01 04:32:26,830 | INFO     | sum of square deviations: 5325139844.5
[2026-02-01 05:33:23] 2026-02-01 04:32:26,832 | INFO     | sum of deviations: 48695054654.49997
[2026-02-01 05:33:23] 2026-02-01 04:32:26,832 | INFO     | mean x: 1769912454.5
[2026-02-01 05:33:23] 2026-02-01 04:32:26,832 | INFO     | mean y: 2472821.096899225
[2026-02-01 05:33:23] 2026-02-01 04:32:26,832 | INFO     | intersect: -16182263396.595814
[2026-02-01 05:33:23] 2026-02-01 04:32:26,833 | INFO     | chi2: 3.4932307478704487
[2026-02-01 05:33:23] 2026-02-01 04:32:26,833 | INFO     | current chi2=3.4932307478704487 (change=59.01467811839963 %)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,833 | INFO     | sum of square deviations: 5021496942.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,835 | INFO     | sum of deviations: -18117016592.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,836 | INFO     | mean x: 1769912607.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,836 | INFO     | mean y: 2506334.4743083003
[2026-02-01 05:33:23] 2026-02-01 04:32:26,836 | INFO     | intersect: 6388159146.330381
[2026-02-01 05:33:23] 2026-02-01 04:32:26,836 | INFO     | chi2: 1.0012528400024916
[2026-02-01 05:33:23] 2026-02-01 04:32:26,836 | INFO     | current chi2=1.0012528400024916 (change=71.33734035139598 %)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,837 | INFO     | sum of square deviations: 4729621702.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,839 | INFO     | sum of deviations: -32999066086.500008
[2026-02-01 05:33:23] 2026-02-01 04:32:26,839 | INFO     | mean x: 1769912759.5
[2026-02-01 05:33:23] 2026-02-01 04:32:26,839 | INFO     | mean y: 2514057.02016129
[2026-02-01 05:33:23] 2026-02-01 04:32:26,839 | INFO     | intersect: 12351380794.793789
[2026-02-01 05:33:23] 2026-02-01 04:32:26,840 | INFO     | chi2: 0.8220098072690312
[2026-02-01 05:33:23] 2026-02-01 04:32:26,840 | INFO     | current chi2=0.8220098072690312 (change=17.901875088116043 %)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,840 | INFO     | left removable region: 30
[2026-02-01 05:33:23] 2026-02-01 04:32:26,840 | INFO     | sum of square deviations: 3627000098.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,842 | INFO     | sum of deviations: -13405010409.000002
[2026-02-01 05:33:23] 2026-02-01 04:32:26,842 | INFO     | mean x: 1769913034.0
[2026-02-01 05:33:23] 2026-02-01 04:32:26,843 | INFO     | mean y: 2521633.511013216
[2026-02-01 05:33:23] 2026-02-01 04:32:26,843 | INFO     | intersect: 6543933820.645389
[2026-02-01 05:33:23] 2026-02-01 04:32:26,843 | INFO     | chi2: 0.028194249049598632
[2026-02-01 05:33:23] 2026-02-01 04:32:26,843 | INFO     | current memory leak: -3.70 B/s (using 227 data points, chi2=0.03)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,844 | INFO     | could have reported an average CPU frequency of 2249 MHz (13 samples)
[2026-02-01 05:33:23] 2026-02-01 04:32:26,844 | INFO     | ..............................
[2026-02-01 05:33:23] 2026-02-01 04:32:26,844 | INFO     | . Timing measurements:
[2026-02-01 05:33:23] 2026-02-01 04:32:26,844 | INFO     | . get job = 0 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,844 | INFO     | . initial setup = 127 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,845 | INFO     | . payload setup = 128 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,845 | INFO     | . stage-in = 0 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,845 | INFO     | . payload execution = 16149 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,845 | INFO     | . stage-out = 4 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,845 | INFO     | . log creation = 1 s
[2026-02-01 05:33:23] 2026-02-01 04:32:26,845 | INFO     | ..............................
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | 
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | job summary report
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | --------------------------------------------------
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | PanDA job id: 6991150629
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | task id: 48318042
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | errors: (none)
[2026-02-01 05:33:23] 2026-02-01 04:32:27,027 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | pilot state: finished 
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | transexitcode: 0
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | exeerrorcode: 0
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | exeerrordiag: 
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | exitcode: 0
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | exitmsg: OK
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | cpuconsumptiontime: 60942 s
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | nevents: 400
[2026-02-01 05:33:23] 2026-02-01 04:32:27,028 | INFO     | neventsw: 0
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | pid: 21604
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | pgrp: 21604
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | corecount: 8
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | event service: False
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | sizes: {0: 2277797, 1: 2278254, 2: 2278342, 12: 2278342, 16282: 2309810, 16283: 2309809, 16287: 2318991, 16290: 2319047, 16291: 2319241}
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | --------------------------------------------------
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | 
[2026-02-01 05:33:23] 2026-02-01 04:32:27,029 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-02-01 05:33:23] 2026-02-01 04:32:27,278 | INFO     | time since job start (16304s) is within the limit (349056.0s)
[2026-02-01 05:33:23] 2026-02-01 04:32:27,394 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,394 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,394 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | job 6991150629 has completed (purged errors)
[2026-02-01 05:33:23] 2026-02-01 04:32:27,396 | INFO     | overall cleanup function is called
[2026-02-01 05:33:23] 2026-02-01 04:32:28,405 | INFO     | --- collectZombieJob: --- 10, [21604]
[2026-02-01 05:33:23] 2026-02-01 04:32:28,405 | INFO     | zombie collector waiting for pid 21604
[2026-02-01 05:33:23] 2026-02-01 04:32:28,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 05:33:23] 2026-02-01 04:32:28,405 | INFO     | collected zombie processes
[2026-02-01 05:33:23] 2026-02-01 04:32:28,405 | INFO     | will attempt to kill all subprocesses of pid=21604
[2026-02-01 05:33:23] 2026-02-01 04:32:28,484 | INFO     | process IDs to be killed: [21604] (in reverse order)
[2026-02-01 05:33:23] 2026-02-01 04:32:29,373 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 05:33:23] 2026-02-01 04:32:29,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 05:33:23] 2026-02-01 04:32:29,375 | INFO     | did not find any defunct processes belonging to 21604
[2026-02-01 05:33:23] 2026-02-01 04:32:29,377 | INFO     | did not find any defunct processes belonging to 21604
[2026-02-01 05:33:23] 2026-02-01 04:32:29,377 | INFO     | ready for new job
[2026-02-01 05:33:23] 2026-02-01 04:32:29,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 05:33:23] 2026-02-01 04:32:29,379 | INFO     | **************************************
[2026-02-01 05:33:23] 2026-02-01 04:32:29,380 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 05:33:23] 2026-02-01 04:32:29,380 | INFO     | **************************************
[2026-02-01 05:33:23] 2026-02-01 04:32:29,380 | INFO     | 
[2026-02-01 05:33:23] 2026-02-01 04:32:29,380 | INFO     | pilot is running in a VM
[2026-02-01 05:33:23] 2026-02-01 04:32:29,380 | INFO     | architecture information:
[2026-02-01 05:33:23] 2026-02-01 04:32:29,387 | INFO     | executing command: cat /etc/os-release
[2026-02-01 05:33:23] 2026-02-01 04:32:29,643 | INFO     | cat /etc/os-release:
[2026-02-01 05:33:23] NAME="CentOS Linux"
[2026-02-01 05:33:23] VERSION="7 (Core)"
[2026-02-01 05:33:23] ID="centos"
[2026-02-01 05:33:23] ID_LIKE="rhel fedora"
[2026-02-01 05:33:23] VERSION_ID="7"
[2026-02-01 05:33:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 05:33:23] ANSI_COLOR="0;31"
[2026-02-01 05:33:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 05:33:23] HOME_URL="https://www.centos.org/"
[2026-02-01 05:33:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 05:33:23] 
[2026-02-01 05:33:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 05:33:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 05:33:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 05:33:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 05:33:23] 
[2026-02-01 05:33:23] 2026-02-01 04:32:29,643 | INFO     | **************************************
[2026-02-01 05:33:23] 2026-02-01 04:32:30,147 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-02-01 05:33:23] 2026-02-01 04:32:30,498 | INFO     | sufficient remaining disk space (494453915648 B)
[2026-02-01 05:33:23] 2026-02-01 04:32:30,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 05:33:23] 2026-02-01 04:32:30,499 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 05:33:23] 2026-02-01 04:32:30,499 | INFO     | update_server=False
[2026-02-01 05:33:23] 2026-02-01 04:32:30,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 05:33:23] 2026-02-01 04:32:30,519 | INFO     | all payload control threads have been joined
[2026-02-01 05:33:23] 2026-02-01 04:32:30,681 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 05:33:23] 2026-02-01 04:32:30,681 | INFO     | aborting loop
[2026-02-01 05:33:23] 2026-02-01 04:32:31,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 05:33:23] 2026-02-01 04:32:31,505 | INFO     | [job] retrieve thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,525 | INFO     | [payload] control thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,539 | INFO     | all data control threads have been joined
[2026-02-01 05:33:23] 2026-02-01 04:32:31,605 | INFO     | [data] copytool_in thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,626 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,644 | INFO     | all job control threads have been joined
[2026-02-01 05:33:23] 2026-02-01 04:32:31,657 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,687 | INFO     | [job] job monitor thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,854 | INFO     | [payload] failed_post thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,872 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:31,991 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 05:33:23] 2026-02-01 04:32:32,031 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 05:33:23] 2026-02-01 04:32:32,245 | INFO     | [job] validate thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:32,545 | INFO     | [data] control thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:32,650 | INFO     | [job] control thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:32,844 | INFO     | [payload] validate_post thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:32,997 | INFO     | [job] queue monitor thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:33,426 | INFO     | [data] copytool_out thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:36,041 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:32:41,089 | INFO     | job.realtimelogging is not enabled
[2026-02-01 05:33:23] 2026-02-01 04:32:42,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 05:33:23] 2026-02-01 04:33:00,386 | INFO     | PID=17155 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-01 05:33:23] 2026-02-01 04:33:00,386 | INFO     | .. there are 2 such processes running
[2026-02-01 05:33:23] 2026-02-01 04:33:00,387 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 05:33:23] 2026-02-01 04:33:00,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 05:33:23] 2026-02-01 04:33:00,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 05:33:23] 2026-02-01 04:33:11,094 | INFO     | [monitor] cgroup control has ended
[2026-02-01 05:33:23] 2026-02-01 04:33:12,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730796930880)>', '<ExcThread(monitor, started 139730217842432)>']
[2026-02-01 05:33:23] 2026-02-01 04:33:12,459 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 05:33:23] 2026-02-01 04:33:12,459 | INFO     | [monitor] control thread has ended
[2026-02-01 05:33:23] 2026-02-01 04:33:17,033 | INFO     | all workflow threads have been joined
[2026-02-01 05:33:23] 2026-02-01 04:33:17,033 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 05:33:23] 2026-02-01 04:33:17,033 | INFO     | traces error code: 0
[2026-02-01 05:33:23] 2026-02-01 04:33:17,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 05:33:23] 2026-02-01 04:33:17,500 [wrapper] ==== pilot stdout END ====
[2026-02-01 05:33:23] 2026-02-01 04:33:17,547 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 05:33:23] 2026-02-01 04:33:17,632 [wrapper] pilotpid: 17155
[2026-02-01 05:33:23] 2026-02-01 04:33:17,756 [wrapper] Pilot exit status: 0
[2026-02-01 05:33:23] 2026-02-01 04:33:18,230 [wrapper] pandaids: 6991150629
[2026-02-01 05:33:23] 2026-02-01 04:33:19,166 [wrapper] cleanup supervisor_pilot 27834 17156
[2026-02-01 05:33:23] 2026-02-01 04:33:19,285 [wrapper] Test setup, not cleaning
[2026-02-01 05:33:23] 2026-02-01 04:33:19,412 [wrapper] apfmon messages muted
[2026-02-01 05:33:23] 2026-02-01 04:33:19,526 [wrapper] ==== wrapper stdout END ====
[2026-02-01 05:33:23] 2026-02-01 04:33:19,628 [wrapper] ==== wrapper stderr END ====
[2026-02-01 05:33:23]  *** Error codes and diagnostics ***
[2026-02-01 05:33:23]     "exeErrorCode": 0,
[2026-02-01 05:33:23]     "exeErrorDiag": "",
[2026-02-01 05:33:23]     "pilotErrorCode": 0,
[2026-02-01 05:33:23]     "pilotErrorDiag": "",
[2026-02-01 05:33:23]  *** Listing of results directory ***
[2026-02-01 05:33:23] total 676860
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc      5111 Jan 31 13:04 queuedata.json
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc    584422 Jan 31 13:04 pilot3.tar.gz
[2026-02-01 05:33:23] -rwx------. 1 boinc boinc     36322 Jan 31 13:04 runpilot2-wrapper.sh
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc       100 Feb  1 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 05:33:23] -rwxr-xr-x. 1 boinc boinc      7986 Feb  1 00:53 run_atlas
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc       105 Feb  1 00:53 job.xml
[2026-02-01 05:33:23] -rw-r--r--. 2 boinc boinc 493709284 Feb  1 00:53 EVNT.48318040._000107.pool.root.1
[2026-02-01 05:33:23] -rw-r--r--. 2 boinc boinc    597767 Feb  1 00:53 input.tar.gz
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc      6390 Feb  1 00:53 init_data.xml
[2026-02-01 05:33:23] -rw-r--r--. 2 boinc boinc     15845 Feb  1 00:53 start_atlas.sh
[2026-02-01 05:33:23] drwxrwx--x. 2 boinc boinc        68 Feb  1 00:53 shared
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc         0 Feb  1 00:53 boinc_lockfile
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc      2536 Feb  1 00:53 pandaJob.out
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc       415 Feb  1 01:00 workernode_map.json
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc   1010528 Feb  1 01:00 agis_schedconf.cvmfs.json
[2026-02-01 05:33:23] drwx------. 5 boinc boinc      4096 Feb  1 01:00 pilot3
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc 189851277 Feb  1 05:30 HITS.48318042._005597.pool.root.1
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc       532 Feb  1 05:31 boinc_task_state.xml
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc        95 Feb  1 05:32 pilot_heartbeat.json
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc      1012 Feb  1 05:32 memory_monitor_summary.json
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc   1511668 Feb  1 05:32 agis_ddmendpoints.agis.ALL.json
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc    518581 Feb  1 05:32 log.48318042._005597.job.log.tgz.1
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc      6320 Feb  1 05:32 heartbeat.json
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc      8192 Feb  1 05:32 boinc_mmap_file
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc        28 Feb  1 05:32 wrapper_checkpoint.txt
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc      4952 Feb  1 05:33 pilotlog.txt
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc   2290204 Feb  1 05:33 log.48318042._005597.job.log.1
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc       357 Feb  1 05:33 output.list
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc       620 Feb  1 05:33 runtime_log
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc   2826240 Feb  1 05:33 result.tar.gz
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc      8816 Feb  1 05:33 runtime_log.err
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc       656 Feb  1 05:33 7FdNDmntO68n9Rq4apOajLDm4fhM0noT9bVooX4SDmsWNKDmpqyNyn.diag
[2026-02-01 05:33:23] -rw-r--r--. 1 boinc boinc     20727 Feb  1 05:33 stderr.txt
[2026-02-01 05:33:23] HITS file was successfully produced:
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc 189851277 Feb  1 05:30 shared/HITS.pool.root.1
[2026-02-01 05:33:23]  *** Contents of shared directory: ***
[2026-02-01 05:33:23] total 670904
[2026-02-01 05:33:23] -rw-r--r--. 2 boinc boinc 493709284 Feb  1 00:53 ATLAS.root_0
[2026-02-01 05:33:23] -rw-r--r--. 2 boinc boinc    597767 Feb  1 00:53 input.tar.gz
[2026-02-01 05:33:23] -rw-r--r--. 2 boinc boinc     15845 Feb  1 00:53 start_atlas.sh
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc 189851277 Feb  1 05:30 HITS.pool.root.1
[2026-02-01 05:33:23] -rw-------. 1 boinc boinc   2826240 Feb  1 05:33 result.tar.gz
05:33:24 (13182): run_atlas exited; CPU time 61113.401435
05:33:24 (13182): called boinc_finish(0)

</stderr_txt>
]]>

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