Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:50:05 (870403): wrapper (7.7.26015): starting
10:50:05 (870403): wrapper: running run_atlas (--nthreads 8)
[2026-01-31 10:50:05] Arguments: --nthreads 8
[2026-01-31 10:50:05] Threads: 8
[2026-01-31 10:50:05] Checking for CVMFS
[2026-01-31 10:50:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 10:50:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 10:50:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 10:50:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 10:50:05] 2.13.3.0 7433 54764 229336 155718 3 481 23085586 40960001 30443 16776704 0 273361374 99.684 234733233 35982 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-31 10:50:05] CVMFS is ok
[2026-01-31 10:50:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 10:50:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 10:50:05] Further information can be found at the LHC@home message board.
[2026-01-31 10:50:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 10:50:05] Checking for apptainer binary...
[2026-01-31 10:50:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 10:50:05] Running /usr/bin/apptainer --version
[2026-01-31 10:50:05] apptainer version 1.4.5-2.el9
[2026-01-31 10:50:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 10:50:06] c-212-16.aglt2.org
[2026-01-31 10:50:06] apptainer works
[2026-01-31 10:50:06] Set ATHENA_PROC_NUMBER=8
[2026-01-31 10:50:06] Set ATHENA_CORE_NUMBER=8
[2026-01-31 10:50:06] Starting ATLAS job with PandaID=6970569245
[2026-01-31 10:50:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 12:13:37]  *** The last 200 lines of the pilot log: ***
[2026-01-31 12:13:37] ]
[2026-01-31 12:13:37] 2026-01-31 17:12:21,811 | INFO     | transferring file log.48215263._051360.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6970569245/log.48215263._051360.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-31 12:13:37] 2026-01-31 17:12:21,811 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6970569245/log.48215263._051360.job.log.tgz.1 /tmp/boinchome/slots/1/log.48215263._051360.job
[2026-01-31 12:13:37] 2026-01-31 17:12:21,902 | INFO     | adding to output.list: log.48215263._051360.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e1/b3/log.48215263._051360.job.log.tg
[2026-01-31 12:13:37] 2026-01-31 17:12:21,903 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-31 12:13:37] 2026-01-31 17:12:21,903 | INFO     | summary of transferred files:
[2026-01-31 12:13:37] 2026-01-31 17:12:21,903 | INFO     |  -- lfn=log.48215263._051360.job.log.tgz.1, status_code=0, status=transferred
[2026-01-31 12:13:37] 2026-01-31 17:12:21,903 | INFO     | stage-out finished correctly
[2026-01-31 12:13:37] 2026-01-31 17:12:22,691 | INFO     | time since job start (4920s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:24,186 | INFO     | monitor loop #300: job 0:6970569245 is in state 'finished'
[2026-01-31 12:13:37] 2026-01-31 17:12:24,186 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-31 12:13:37] 2026-01-31 17:12:24,234 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-31 12:13:37] 2026-01-31 17:12:24,697 | INFO     | time since job start (4922s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:26,022 | INFO     | job 6970569245 has state=finished
[2026-01-31 12:13:37] 2026-01-31 17:12:26,022 | INFO     | preparing for final server update for job 6970569245 in state='finished'
[2026-01-31 12:13:37] 2026-01-31 17:12:26,154 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-31 12:13:37] 2026-01-31 17:12:26,154 | INFO     | this job has now completed (state=finished)
[2026-01-31 12:13:37] 2026-01-31 17:12:26,154 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-31 12:13:37] 2026-01-31 17:12:26,154 | INFO     | log transfer has been attempted: DONE
[2026-01-31 12:13:37] 2026-01-31 17:12:26,154 | INFO     | job 6970569245 has finished - writing final server update
[2026-01-31 12:13:37] 2026-01-31 17:12:26,155 | INFO     | total number of processed events: 400 (read)
[2026-01-31 12:13:37] 2026-01-31 17:12:26,184 | INFO     | executing command: lscpu
[2026-01-31 12:13:37] 2026-01-31 17:12:26,268 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-31 12:13:37] 2026-01-31 17:12:26,704 | INFO     | time since job start (4924s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:26,705 | INFO     | monitor loop #301: job 0:6970569245 is in state 'finished'
[2026-01-31 12:13:37] 2026-01-31 17:12:26,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-31 12:13:37] 2026-01-31 17:12:28,715 | INFO     | time since job start (4926s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:29,217 | INFO     | monitor loop #302: job 0:6970569245 is in state 'finished'
[2026-01-31 12:13:37] 2026-01-31 17:12:29,220 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-31 12:13:37] 2026-01-31 17:12:30,726 | INFO     | time since job start (4928s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:31,725 | INFO     | monitor loop #303: job 0:6970569245 is in state 'finished'
[2026-01-31 12:13:37] 2026-01-31 17:12:31,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-31 12:13:37] 2026-01-31 17:12:32,733 | INFO     | time since job start (4930s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:34,230 | INFO     | monitor loop #304: job 0:6970569245 is in state 'finished'
[2026-01-31 12:13:37] 2026-01-31 17:12:34,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-31 12:13:37] 2026-01-31 17:12:34,753 | INFO     | time since job start (4932s) is within the limit (349056.0s)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,121 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-31 12:13:37] 2026-01-31 17:12:36,132 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3337.571833333333
[2026-01-31 12:13:37] 2026-01-31 17:12:36,200 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6970569245/memory_monitor_summary.json (trf name=prmon)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,200 | INFO     | extracted standard info from prmon json
[2026-01-31 12:13:37] 2026-01-31 17:12:36,201 | INFO     | extracted standard memory fields from prmon json
[2026-01-31 12:13:37] 2026-01-31 17:12:36,201 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-31 12:13:37] 2026-01-31 17:12:36,201 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-31 12:13:37] 2026-01-31 17:12:36,201 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-31 12:13:37] 2026-01-31 17:12:36,225 | INFO     | fitting pss+swap vs Time
[2026-01-31 12:13:37] 2026-01-31 17:12:36,225 | INFO     | sum of square deviations: 120605052.0
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | sum of deviations: -11401120819.999998
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | mean x: 1769877157.0
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | mean y: 2648699.7397260275
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | intersect: 167313909454.51395
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | chi2: 0.1411665127091073
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | current memory leak: -94.53 B/s (using 73 data points, chi2=0.14)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,226 | INFO     | could have reported an average CPU frequency of 3312 MHz (6 samples)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | ..............................
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . Timing measurements:
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . get job = 0 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . initial setup = 2 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . payload setup = 9 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . stage-in = 0 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . payload execution = 4885 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . stage-out = 1 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | . log creation = 0 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,227 | INFO     | ..............................
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | 
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | job summary report
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | --------------------------------------------------
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | PanDA job id: 6970569245
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | task id: 48215263
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | errors: (none)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | pilot state: finished 
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | transexitcode: 0
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | exeerrorcode: 0
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | exeerrordiag: 
[2026-01-31 12:13:37] 2026-01-31 17:12:36,566 | INFO     | exitcode: 0
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | exitmsg: OK
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | cpuconsumptiontime: 19298 s
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | nevents: 400
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | neventsw: 0
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | pid: 889818
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | pgrp: 889818
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | corecount: 8
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | event service: False
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | sizes: {0: 2277983, 8: 2278245, 11: 2278273, 4899: 2304465, 4901: 2313463, 4904: 2313519, 4916: 2313841}
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | --------------------------------------------------
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | 
[2026-01-31 12:13:37] 2026-01-31 17:12:36,567 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-31 12:13:37] 2026-01-31 17:12:36,655 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,655 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,655 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,655 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,655 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 12:13:37] 2026-01-31 17:12:36,656 | INFO     | job 6970569245 has completed (purged errors)
[2026-01-31 12:13:37] 2026-01-31 17:12:36,657 | INFO     | overall cleanup function is called
[2026-01-31 12:13:37] 2026-01-31 17:12:37,680 | INFO     | --- collectZombieJob: --- 10, [889818]
[2026-01-31 12:13:37] 2026-01-31 17:12:37,680 | INFO     | zombie collector waiting for pid 889818
[2026-01-31 12:13:37] 2026-01-31 17:12:37,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 12:13:37] 2026-01-31 17:12:37,680 | INFO     | collected zombie processes
[2026-01-31 12:13:37] 2026-01-31 17:12:37,680 | INFO     | will attempt to kill all subprocesses of pid=889818
[2026-01-31 12:13:37] 2026-01-31 17:12:40,081 | INFO     | process IDs to be killed: [889818] (in reverse order)
[2026-01-31 12:13:37] 2026-01-31 17:12:40,848 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 12:13:37] 2026-01-31 17:12:40,849 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 12:13:37] 2026-01-31 17:12:40,981 | INFO     | did not find any defunct processes belonging to 889818
[2026-01-31 12:13:37] 2026-01-31 17:12:41,142 | INFO     | did not find any defunct processes belonging to 889818
[2026-01-31 12:13:37] 2026-01-31 17:12:41,142 | INFO     | ready for new job
[2026-01-31 12:13:37] 2026-01-31 17:12:41,165 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 12:13:37] 2026-01-31 17:12:41,166 | INFO     | ***************************************
[2026-01-31 12:13:37] 2026-01-31 17:12:41,167 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-31 12:13:37] 2026-01-31 17:12:41,167 | INFO     | ***************************************
[2026-01-31 12:13:37] 2026-01-31 17:12:41,167 | INFO     | 
[2026-01-31 12:13:37] 2026-01-31 17:12:41,187 | INFO     | architecture information:
[2026-01-31 12:13:37] 2026-01-31 17:12:41,209 | INFO     | executing command: cat /etc/os-release
[2026-01-31 12:13:37] 2026-01-31 17:12:41,246 | INFO     | cat /etc/os-release:
[2026-01-31 12:13:37] NAME="CentOS Linux"
[2026-01-31 12:13:37] VERSION="7 (Core)"
[2026-01-31 12:13:37] ID="centos"
[2026-01-31 12:13:37] ID_LIKE="rhel fedora"
[2026-01-31 12:13:37] VERSION_ID="7"
[2026-01-31 12:13:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 12:13:37] ANSI_COLOR="0;31"
[2026-01-31 12:13:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 12:13:37] HOME_URL="https://www.centos.org/"
[2026-01-31 12:13:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 12:13:37] 
[2026-01-31 12:13:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 12:13:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 12:13:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 12:13:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 12:13:37] 
[2026-01-31 12:13:37] 2026-01-31 17:12:41,247 | INFO     | ***************************************
[2026-01-31 12:13:37] 2026-01-31 17:12:41,750 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-31 12:13:37] 2026-01-31 17:12:41,813 | INFO     | sufficient remaining disk space (125210460160 B)
[2026-01-31 12:13:37] 2026-01-31 17:12:41,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 12:13:37] 2026-01-31 17:12:41,822 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 12:13:37] 2026-01-31 17:12:41,822 | INFO     | update_server=False
[2026-01-31 12:13:37] 2026-01-31 17:12:41,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 12:13:37] 2026-01-31 17:12:41,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 12:13:37] 2026-01-31 17:12:41,844 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-31 12:13:37] 2026-01-31 17:12:41,844 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-31 12:13:37] 2026-01-31 17:12:41,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 12:13:37] 2026-01-31 17:12:41,844 | INFO     | will abort loop
[2026-01-31 12:13:37] 2026-01-31 17:12:42,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 12:13:37] 2026-01-31 17:12:42,828 | INFO     | [job] retrieve thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:42,832 | INFO     | [job] queue monitor thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:42,840 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:42,850 | INFO     | [job] job monitor thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:42,900 | INFO     | all data control threads have been joined
[2026-01-31 12:13:37] 2026-01-31 17:12:42,901 | INFO     | all payload control threads have been joined
[2026-01-31 12:13:37] 2026-01-31 17:12:43,344 | INFO     | [data] copytool_in thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:43,408 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:43,514 | INFO     | all job control threads have been joined
[2026-01-31 12:13:37] 2026-01-31 17:12:43,726 | INFO     | [payload] validate_post thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:43,800 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:43,906 | INFO     | [data] control thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:43,907 | INFO     | [payload] control thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:44,176 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 12:13:37] 2026-01-31 17:12:44,295 | INFO     | [job] validate thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:44,299 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:44,331 | INFO     | [payload] failed_post thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:44,520 | INFO     | [job] control thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:44,570 | INFO     | [data] copytool_out thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:12:48,185 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 12:13:37] 2026-01-31 17:13:09,629 | INFO     | PID=876926 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-31 12:13:37] 2026-01-31 17:13:09,638 | INFO     | .. there are 47 such processes running
[2026-01-31 12:13:37] 2026-01-31 17:13:09,643 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 12:13:37] 2026-01-31 17:13:09,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 12:13:37] 2026-01-31 17:13:09,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 12:13:37] 2026-01-31 17:13:30,202 | INFO     | [monitor] cgroup control has ended
[2026-01-31 12:13:37] 2026-01-31 17:13:30,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668405344064)>', '<ExcThread(monitor, started 139667991140096)>']
[2026-01-31 12:13:37] 2026-01-31 17:13:31,795 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 12:13:37] 2026-01-31 17:13:31,795 | INFO     | [monitor] control thread has ended
[2026-01-31 12:13:37] 2026-01-31 17:13:35,929 | INFO     | all workflow threads have been joined
[2026-01-31 12:13:37] 2026-01-31 17:13:35,929 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 12:13:37] 2026-01-31 17:13:35,929 | INFO     | traces error code: 0
[2026-01-31 12:13:37] 2026-01-31 17:13:35,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 12:13:37] 2026-01-31 17:13:36,542 [wrapper] ==== pilot stdout END ====
[2026-01-31 12:13:37] 2026-01-31 17:13:36,556 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 12:13:37] 2026-01-31 17:13:36,581 [wrapper] pilotpid: 876926
[2026-01-31 12:13:37] 2026-01-31 17:13:36,615 [wrapper] Pilot exit status: 0
[2026-01-31 12:13:37] 2026-01-31 17:13:36,709 [wrapper] pandaids: 6970569245
[2026-01-31 12:13:37] 2026-01-31 17:13:37,219 [wrapper] cleanup supervisor_pilot 1458820 876929
[2026-01-31 12:13:37] 2026-01-31 17:13:37,258 [wrapper] Test setup, not cleaning
[2026-01-31 12:13:37] 2026-01-31 17:13:37,288 [wrapper] apfmon messages muted
[2026-01-31 12:13:37] 2026-01-31 17:13:37,314 [wrapper] ==== wrapper stdout END ====
[2026-01-31 12:13:37] 2026-01-31 17:13:37,339 [wrapper] ==== wrapper stderr END ====
[2026-01-31 12:13:37]  *** Error codes and diagnostics ***
[2026-01-31 12:13:37]     "exeErrorCode": 0,
[2026-01-31 12:13:37]     "exeErrorDiag": "",
[2026-01-31 12:13:37]     "pilotErrorCode": 0,
[2026-01-31 12:13:37]     "pilotErrorDiag": "",
[2026-01-31 12:13:37]  *** Listing of results directory ***
[2026-01-31 12:13:37] total 734308
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas    579449 Jan 15 03:34 pilot3.tar.gz
[2026-01-31 12:13:37] -rwx------. 1 boincer umatlas     36322 Jan 15 03:38 runpilot2-wrapper.sh
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas      5112 Jan 15 03:44 queuedata.json
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas       100 Jan 31 10:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 12:13:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 31 10:50 run_atlas
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas       105 Jan 31 10:50 job.xml
[2026-01-31 12:13:37] -rw-r--r--. 2 boincer umatlas 596055384 Jan 31 10:50 EVNT.32794306._001996.pool.root.1
[2026-01-31 12:13:37] -rw-r--r--. 2 boincer umatlas     15847 Jan 31 10:50 start_atlas.sh
[2026-01-31 12:13:37] drwxrwx--x. 2 boincer umatlas      4096 Jan 31 10:50 shared
[2026-01-31 12:13:37] -rw-r--r--. 2 boincer umatlas    592401 Jan 31 10:50 input.tar.gz
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas         0 Jan 31 10:50 boinc_lockfile
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas      2509 Jan 31 10:50 pandaJob.out
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas        57 Jan 31 10:50 setup.sh.local
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas   1010528 Jan 31 10:50 agis_schedconf.cvmfs.json
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas   1511668 Jan 31 10:50 agis_ddmendpoints.agis.ALL.json
[2026-01-31 12:13:37] drwx------. 5 boincer umatlas      4096 Jan 31 10:50 pilot3
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas      6958 Jan 31 12:10 init_data.xml
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas 149987958 Jan 31 12:11 HITS.48215263._051360.pool.root.1
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas       530 Jan 31 12:11 boinc_task_state.xml
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas      1030 Jan 31 12:12 memory_monitor_summary.json
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas    319180 Jan 31 12:12 log.48215263._051360.job.log.tgz.1
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas      7787 Jan 31 12:12 heartbeat.json
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas        95 Jan 31 12:13 pilot_heartbeat.json
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas      5010 Jan 31 12:13 pilotlog.txt
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas      8192 Jan 31 12:13 boinc_mmap_file
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas        27 Jan 31 12:13 wrapper_checkpoint.txt
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas    657137 Jan 31 12:13 log.48215263._051360.job.log.1
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas       357 Jan 31 12:13 output.list
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas       620 Jan 31 12:13 runtime_log
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas    993280 Jan 31 12:13 result.tar.gz
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas      9342 Jan 31 12:13 runtime_log.err
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas       652 Jan 31 12:13 2BwMDmi3X08nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIyuKDmwVpXun.diag
[2026-01-31 12:13:37] -rw-r--r--. 1 boincer umatlas     22416 Jan 31 12:13 stderr.txt
[2026-01-31 12:13:37] HITS file was successfully produced:
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas 149987958 Jan 31 12:11 shared/HITS.pool.root.1
[2026-01-31 12:13:37]  *** Contents of shared directory: ***
[2026-01-31 12:13:37] total 730140
[2026-01-31 12:13:37] -rw-r--r--. 2 boincer umatlas 596055384 Jan 31 10:50 ATLAS.root_0
[2026-01-31 12:13:37] -rw-r--r--. 2 boincer umatlas     15847 Jan 31 10:50 start_atlas.sh
[2026-01-31 12:13:37] -rw-r--r--. 2 boincer umatlas    592401 Jan 31 10:50 input.tar.gz
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas 149987958 Jan 31 12:11 HITS.pool.root.1
[2026-01-31 12:13:37] -rw-------. 1 boincer umatlas    993280 Jan 31 12:13 result.tar.gz
12:13:39 (870403): run_atlas exited; CPU time 19500.269147
12:13:39 (870403): called boinc_finish(0)

</stderr_txt>
]]>

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