Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:38:49 (3056043): wrapper (7.7.26015): starting
16:38:49 (3056043): wrapper: running run_atlas (--nthreads 12)
[2026-01-31 16:38:49] Arguments: --nthreads 12
[2026-01-31 16:38:49] Threads: 12
[2026-01-31 16:38:49] Checking for CVMFS
[2026-01-31 16:38:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 16:38:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 16:38:49] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 16:38:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 16:38:49] 2.11.0.0 921820 2608 92416 155720 1 188 3896252 6144000 11972 130560 0 26313164 99.999 99258 150 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-31 16:38:49] CVMFS is ok
[2026-01-31 16:38:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 16:38:49] Checking for apptainer binary...
[2026-01-31 16:38:49] apptainer is not installed, using version from CVMFS
[2026-01-31 16:38:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 16:38:50] radiat0r
[2026-01-31 16:38:50] apptainer works
[2026-01-31 16:38:50] Set ATHENA_PROC_NUMBER=12
[2026-01-31 16:38:50] Set ATHENA_CORE_NUMBER=12
[2026-01-31 16:38:50] Starting ATLAS job with PandaID=6986359550
[2026-01-31 16:38:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 17:39:21]  *** The last 200 lines of the pilot log: ***
[2026-01-31 17:39:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-31 17:39:21]  is_altstaged=None
[2026-01-31 17:39:21]  is_tar=False
[2026-01-31 17:39:21]  lfn=log.48317971._002710.job.log.tgz.1
[2026-01-31 17:39:21]  mtime=0
[2026-01-31 17:39:21]  protocol_id=None
[2026-01-31 17:39:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-31 17:39:21]  replicas=None
[2026-01-31 17:39:21]  scope=mc23_13p6TeV
[2026-01-31 17:39:21]  status=None
[2026-01-31 17:39:21]  status_code=0
[2026-01-31 17:39:21]  storage_token=
[2026-01-31 17:39:21]  surl=/var/lib/boinc/slots/11/PanDA_Pilot-6986359550/log.48317971._002710.job.log.tgz.1
[2026-01-31 17:39:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/66/log.48317971._002710.job.log.tgz.1
[2026-01-31 17:39:21]  workdir=None
[2026-01-31 17:39:21] ]
[2026-01-31 17:39:21] 2026-01-31 17:38:09,865 | INFO     | transferring file log.48317971._002710.job.log.tgz.1 from /var/lib/boinc/slots/11/PanDA_Pilot-6986359550/log.48317971._002710.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-31 17:39:21] 2026-01-31 17:38:09,865 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/11/PanDA_Pilot-6986359550/log.48317971._002710.job.log.tgz.1 /var/lib/boinc/slots/11/log.48317971._002710.j
[2026-01-31 17:39:21] 2026-01-31 17:38:09,893 | INFO     | adding to output.list: log.48317971._002710.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/66/log.48317971._002710.job.log.tg
[2026-01-31 17:39:21] 2026-01-31 17:38:09,894 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-31 17:39:21] 2026-01-31 17:38:09,894 | INFO     | summary of transferred files:
[2026-01-31 17:39:21] 2026-01-31 17:38:09,894 | INFO     |  -- lfn=log.48317971._002710.job.log.tgz.1, status_code=0, status=transferred
[2026-01-31 17:39:21] 2026-01-31 17:38:09,895 | INFO     | stage-out finished correctly
[2026-01-31 17:39:21] 2026-01-31 17:38:10,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-31 17:39:21] 2026-01-31 17:38:10,440 | WARNING  | process 3066347 can no longer be monitored (due to stat problems) - aborting
[2026-01-31 17:39:21] 2026-01-31 17:38:10,441 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6986359550/memory_monitor_summary.json (trf name=prmon)
[2026-01-31 17:39:21] 2026-01-31 17:38:10,672 | INFO     | time since job start (3542s) is within the limit (349056.0s)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,289 | INFO     | number of running child processes to parent process 3066347: 1
[2026-01-31 17:39:21] 2026-01-31 17:38:11,289 | INFO     | maximum number of monitored processes: 6
[2026-01-31 17:39:21] 2026-01-31 17:38:11,685 | INFO     | job 6986359550 has state=finished
[2026-01-31 17:39:21] 2026-01-31 17:38:11,686 | INFO     | preparing for final server update for job 6986359550 in state='finished'
[2026-01-31 17:39:21] 2026-01-31 17:38:11,686 | INFO     | reading metadata from: /var/lib/boinc/slots/11/PanDA_Pilot-6986359550/jobReport.json
[2026-01-31 17:39:21] 2026-01-31 17:38:11,689 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/11/workernode_map.json
[2026-01-31 17:39:21] 2026-01-31 17:38:11,689 | INFO     | this job has now completed (state=finished)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,689 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,689 | INFO     | log transfer has been attempted: DONE
[2026-01-31 17:39:21] 2026-01-31 17:38:11,689 | INFO     | job 6986359550 has finished - writing final server update
[2026-01-31 17:39:21] 2026-01-31 17:38:11,690 | INFO     | total number of processed events: 400 (read)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,776 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6986359550/memory_monitor_summary.json (trf name=prmon)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,777 | INFO     | extracted standard info from prmon json
[2026-01-31 17:39:21] 2026-01-31 17:38:11,777 | INFO     | extracted standard memory fields from prmon json
[2026-01-31 17:39:21] 2026-01-31 17:38:11,777 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-31 17:39:21] 2026-01-31 17:38:11,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-31 17:39:21] 2026-01-31 17:38:11,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-31 17:39:21] 2026-01-31 17:38:11,779 | INFO     | fitting pss+swap vs Time
[2026-01-31 17:39:21] 2026-01-31 17:38:11,779 | INFO     | sum of square deviations: 41117050.0
[2026-01-31 17:39:21] 2026-01-31 17:38:11,780 | INFO     | sum of deviations: -199614082.00000006
[2026-01-31 17:39:21] 2026-01-31 17:38:11,780 | INFO     | mean x: 1769879404.0
[2026-01-31 17:39:21] 2026-01-31 17:38:11,780 | INFO     | mean y: 2681673.274509804
[2026-01-31 17:39:21] 2026-01-31 17:38:11,780 | INFO     | intersect: 8595050349.533318
[2026-01-31 17:39:21] 2026-01-31 17:38:11,780 | INFO     | chi2: 0.003639951741874362
[2026-01-31 17:39:21] 2026-01-31 17:38:11,780 | INFO     | current memory leak: -4.85 B/s (using 51 data points, chi2=0.00)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | could have reported an average CPU frequency of 2348 MHz (5 samples)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | ..............................
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . Timing measurements:
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . get job = 0 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . initial setup = 7 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . payload setup = 8 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . stage-in = 0 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . payload execution = 3517 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,781 | INFO     | . stage-out = 1 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,782 | INFO     | . log creation = 0 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,782 | INFO     | ..............................
[2026-01-31 17:39:21] 2026-01-31 17:38:11,977 | INFO     | 
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | job summary report
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | --------------------------------------------------
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | PanDA job id: 6986359550
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | task id: 48317971
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | errors: (none)
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | pilot state: finished 
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | transexitcode: 0
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | exeerrorcode: 0
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | exeerrordiag: 
[2026-01-31 17:39:21] 2026-01-31 17:38:11,978 | INFO     | exitcode: 0
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | exitmsg: OK
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | cpuconsumptiontime: 37135 s
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | nevents: 400
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | neventsw: 0
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | pid: 3066347
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | pgrp: 3066347
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | corecount: 12
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | event service: False
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | sizes: {0: 2277166, 1: 2278285, 12: 2278285, 3528: 2304133, 3530: 2313189, 3532: 2313359}
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | --------------------------------------------------
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | 
[2026-01-31 17:39:21] 2026-01-31 17:38:11,979 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-31 17:39:21] 2026-01-31 17:38:12,014 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 17:39:21] 2026-01-31 17:38:12,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,017 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 17:39:21] 2026-01-31 17:38:12,017 | INFO     | job 6986359550 has completed (purged errors)
[2026-01-31 17:39:21] 2026-01-31 17:38:12,017 | INFO     | overall cleanup function is called
[2026-01-31 17:39:21] 2026-01-31 17:38:13,027 | INFO     | --- collectZombieJob: --- 10, [3066347]
[2026-01-31 17:39:21] 2026-01-31 17:38:13,028 | INFO     | zombie collector waiting for pid 3066347
[2026-01-31 17:39:21] 2026-01-31 17:38:13,028 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 17:39:21] 2026-01-31 17:38:13,028 | INFO     | collected zombie processes
[2026-01-31 17:39:21] 2026-01-31 17:38:13,028 | INFO     | will attempt to kill all subprocesses of pid=3066347
[2026-01-31 17:39:21] 2026-01-31 17:38:13,826 | INFO     | process IDs to be killed: [3066347] (in reverse order)
[2026-01-31 17:39:21] 2026-01-31 17:38:14,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 17:39:21] 2026-01-31 17:38:14,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 17:39:21] 2026-01-31 17:38:14,125 | INFO     | did not find any defunct processes belonging to 3066347
[2026-01-31 17:39:21] 2026-01-31 17:38:14,150 | INFO     | did not find any defunct processes belonging to 3066347
[2026-01-31 17:39:21] 2026-01-31 17:38:14,150 | INFO     | ready for new job
[2026-01-31 17:39:21] 2026-01-31 17:38:14,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 17:39:21] 2026-01-31 17:38:14,152 | INFO     | **************************************
[2026-01-31 17:39:21] 2026-01-31 17:38:14,152 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 17:39:21] 2026-01-31 17:38:14,153 | INFO     | **************************************
[2026-01-31 17:39:21] 2026-01-31 17:38:14,153 | INFO     | 
[2026-01-31 17:39:21] 2026-01-31 17:38:14,189 | INFO     | architecture information:
[2026-01-31 17:39:21] 2026-01-31 17:38:14,190 | INFO     | executing command: cat /etc/os-release
[2026-01-31 17:39:21] 2026-01-31 17:38:14,216 | INFO     | cat /etc/os-release:
[2026-01-31 17:39:21] NAME="CentOS Linux"
[2026-01-31 17:39:21] VERSION="7 (Core)"
[2026-01-31 17:39:21] ID="centos"
[2026-01-31 17:39:21] ID_LIKE="rhel fedora"
[2026-01-31 17:39:21] VERSION_ID="7"
[2026-01-31 17:39:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 17:39:21] ANSI_COLOR="0;31"
[2026-01-31 17:39:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 17:39:21] HOME_URL="https://www.centos.org/"
[2026-01-31 17:39:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 17:39:21] 
[2026-01-31 17:39:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 17:39:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 17:39:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 17:39:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 17:39:21] 
[2026-01-31 17:39:21] 2026-01-31 17:38:14,216 | INFO     | **************************************
[2026-01-31 17:39:21] 2026-01-31 17:38:14,719 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-31 17:39:21] 2026-01-31 17:38:14,745 | INFO     | sufficient remaining disk space (1701762301952 B)
[2026-01-31 17:39:21] 2026-01-31 17:38:14,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 17:39:21] 2026-01-31 17:38:14,746 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 17:39:21] 2026-01-31 17:38:14,746 | INFO     | update_server=False
[2026-01-31 17:39:21] 2026-01-31 17:38:14,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 17:39:21] 2026-01-31 17:38:14,765 | INFO     | all data control threads have been joined
[2026-01-31 17:39:21] 2026-01-31 17:38:14,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:39:21] 2026-01-31 17:38:14,799 | INFO     | aborting loop
[2026-01-31 17:39:21] 2026-01-31 17:38:15,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 17:39:21] 2026-01-31 17:38:15,751 | INFO     | [job] retrieve thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:15,770 | INFO     | [data] control thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:15,781 | INFO     | all job control threads have been joined
[2026-01-31 17:39:21] 2026-01-31 17:38:15,804 | INFO     | [job] job monitor thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,012 | INFO     | [job] validate thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,124 | INFO     | [payload] validate_post thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,135 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 17:39:21] 2026-01-31 17:38:16,168 | INFO     | all payload control threads have been joined
[2026-01-31 17:39:21] 2026-01-31 17:38:16,187 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,352 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,640 | INFO     | [data] copytool_in thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,786 | INFO     | [payload] failed_post thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,786 | INFO     | [job] control thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:16,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:39:21] 2026-01-31 17:38:17,119 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:17,174 | INFO     | [payload] control thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:17,509 | INFO     | [data] copytool_out thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:17,892 | INFO     | [job] queue monitor thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:20,141 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:25,443 | INFO     | job.realtimelogging is not enabled
[2026-01-31 17:39:21] 2026-01-31 17:38:26,448 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 17:39:21] 2026-01-31 17:38:44,807 | INFO     | PID=3060765 has CPU usage=13.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-31 17:39:21] 2026-01-31 17:38:44,807 | INFO     | .. there are 14 such processes running
[2026-01-31 17:39:21] 2026-01-31 17:38:44,808 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 17:39:21] 2026-01-31 17:38:44,808 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 17:39:21] 2026-01-31 17:38:44,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 17:39:21] 2026-01-31 17:39:00,317 [wrapper] supervise_pilot (15 min periods counter: 5)
[2026-01-31 17:39:21] 2026-01-31 17:39:13,838 | INFO     | [monitor] cgroup control has ended
[2026-01-31 17:39:21] 2026-01-31 17:39:15,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140052473603904)>', '<ExcThread(monitor, started 140051300218624)>']
[2026-01-31 17:39:21] 2026-01-31 17:39:15,962 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 17:39:21] 2026-01-31 17:39:15,962 | INFO     | [monitor] control thread has ended
[2026-01-31 17:39:21] 2026-01-31 17:39:20,844 | INFO     | all workflow threads have been joined
[2026-01-31 17:39:21] 2026-01-31 17:39:20,844 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 17:39:21] 2026-01-31 17:39:20,844 | INFO     | traces error code: 0
[2026-01-31 17:39:21] 2026-01-31 17:39:20,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 17:39:21] 2026-01-31 17:39:21,001 [wrapper] ==== pilot stdout END ====
[2026-01-31 17:39:21] 2026-01-31 17:39:21,005 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 17:39:21] 2026-01-31 17:39:21,008 [wrapper] pilotpid: 3060765
[2026-01-31 17:39:21] 2026-01-31 17:39:21,012 [wrapper] Pilot exit status: 0
[2026-01-31 17:39:21] 2026-01-31 17:39:21,026 [wrapper] pandaids: 6986359550
[2026-01-31 17:39:21] 2026-01-31 17:39:21,205 [wrapper] cleanup supervisor_pilot 3217937 3060766
[2026-01-31 17:39:21] 2026-01-31 17:39:21,209 [wrapper] Test setup, not cleaning
[2026-01-31 17:39:21] 2026-01-31 17:39:21,212 [wrapper] apfmon messages muted
[2026-01-31 17:39:21] 2026-01-31 17:39:21,216 [wrapper] ==== wrapper stdout END ====
[2026-01-31 17:39:21] 2026-01-31 17:39:21,220 [wrapper] ==== wrapper stderr END ====
[2026-01-31 17:39:21]  *** Error codes and diagnostics ***
[2026-01-31 17:39:21]     "exeErrorCode": 0,
[2026-01-31 17:39:21]     "exeErrorDiag": "",
[2026-01-31 17:39:21]     "pilotErrorCode": 0,
[2026-01-31 17:39:21]     "pilotErrorDiag": "",
[2026-01-31 17:39:21]  *** Listing of results directory ***
[2026-01-31 17:39:21] total 730840
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc    584422 Jan 28 18:37 pilot3.tar.gz
[2026-01-31 17:39:21] -rwx------ 1 boinc boinc     36322 Jan 28 18:38 runpilot2-wrapper.sh
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc      5111 Jan 28 18:39 queuedata.json
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc       100 Jan 31 16:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 17:39:21] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 16:38 run_atlas
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc       105 Jan 31 16:38 job.xml
[2026-01-31 17:39:21] -rw-r--r-- 2 boinc boinc     15845 Jan 31 16:38 start_atlas.sh
[2026-01-31 17:39:21] drwxrwx--x 2 boinc boinc      4096 Jan 31 16:38 shared
[2026-01-31 17:39:21] -rw-r--r-- 2 boinc boinc    597758 Jan 31 16:38 input.tar.gz
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc      9417 Jan 31 16:38 init_data.xml
[2026-01-31 17:39:21] -rw-r--r-- 2 boinc boinc 541778106 Jan 31 16:38 EVNT.48317969._000054.pool.root.1
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc         0 Jan 31 16:38 boinc_setup_complete
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc         0 Jan 31 16:38 boinc_lockfile
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc      2514 Jan 31 16:38 pandaJob.out
[2026-01-31 17:39:21] -rw------- 1 boinc boinc   1010520 Jan 31 16:39 agis_schedconf.cvmfs.json
[2026-01-31 17:39:21] -rw------- 1 boinc boinc   1511668 Jan 31 16:39 agis_ddmendpoints.agis.ALL.json
[2026-01-31 17:39:21] -rw------- 1 boinc boinc       421 Jan 31 16:39 workernode_map.json
[2026-01-31 17:39:21] drwx------ 5 boinc boinc      4096 Jan 31 16:39 pilot3
[2026-01-31 17:39:21] -rw------- 1 boinc boinc 200803309 Jan 31 17:37 HITS.48317971._002710.pool.root.1
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc       530 Jan 31 17:37 boinc_task_state.xml
[2026-01-31 17:39:21] -rw------- 1 boinc boinc        95 Jan 31 17:38 pilot_heartbeat.json
[2026-01-31 17:39:21] -rw------- 1 boinc boinc      1027 Jan 31 17:38 memory_monitor_summary.json
[2026-01-31 17:39:21] -rw------- 1 boinc boinc    407515 Jan 31 17:38 log.48317971._002710.job.log.tgz.1
[2026-01-31 17:39:21] -rw------- 1 boinc boinc      6287 Jan 31 17:38 heartbeat.json
[2026-01-31 17:39:21] -rw------- 1 boinc boinc      4896 Jan 31 17:39 pilotlog.txt
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc        27 Jan 31 17:39 wrapper_checkpoint.txt
[2026-01-31 17:39:21] -rw------- 1 boinc boinc    517010 Jan 31 17:39 log.48317971._002710.job.log.1
[2026-01-31 17:39:21] -rw------- 1 boinc boinc       357 Jan 31 17:39 output.list
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc       620 Jan 31 17:39 runtime_log
[2026-01-31 17:39:21] -rw------- 1 boinc boinc    942080 Jan 31 17:39 result.tar.gz
[2026-01-31 17:39:21] -rw------- 1 boinc boinc       643 Jan 31 17:39 SsJLDmfbP58n9Rq4apOajLDm4fhM0noT9bVooX4SDmypGKDmyOFuMn.diag
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc      8787 Jan 31 17:39 runtime_log.err
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc      8192 Jan 31 17:39 boinc_mmap_file
[2026-01-31 17:39:21] -rw-r--r-- 1 boinc boinc     21124 Jan 31 17:39 stderr.txt
[2026-01-31 17:39:21] HITS file was successfully produced:
[2026-01-31 17:39:21] -rw------- 1 boinc boinc 200803309 Jan 31 17:37 shared/HITS.pool.root.1
[2026-01-31 17:39:21]  *** Contents of shared directory: ***
[2026-01-31 17:39:21] total 726712
[2026-01-31 17:39:21] -rw-r--r-- 2 boinc boinc     15845 Jan 31 16:38 start_atlas.sh
[2026-01-31 17:39:21] -rw-r--r-- 2 boinc boinc    597758 Jan 31 16:38 input.tar.gz
[2026-01-31 17:39:21] -rw-r--r-- 2 boinc boinc 541778106 Jan 31 16:38 ATLAS.root_0
[2026-01-31 17:39:21] -rw------- 1 boinc boinc 200803309 Jan 31 17:37 HITS.pool.root.1
[2026-01-31 17:39:21] -rw------- 1 boinc boinc    942080 Jan 31 17:39 result.tar.gz
17:39:23 (3056043): run_atlas exited; CPU time 37369.613094
17:39:23 (3056043): called boinc_finish(0)

</stderr_txt>
]]>

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