Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:31:33 (704297): wrapper (7.7.26015): starting
08:31:33 (704297): wrapper: running run_atlas (--nthreads 3)
[2026-02-01 08:31:33] Arguments: --nthreads 3
[2026-02-01 08:31:33] Threads: 3
[2026-02-01 08:31:33] Checking for CVMFS
[2026-02-01 08:31:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 08:31:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 08:31:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 08:31:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 08:31:34] 2.9.2.0 4004477 5418 83184 155743 0 50 19150968 36864000 0 130560 0 2480180 99.987 167463 9013 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 08:31:34] CVMFS is ok
[2026-02-01 08:31:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 08:31:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 08:31:34] Further information can be found at the LHC@home message board.
[2026-02-01 08:31:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 08:31:34] Checking for apptainer binary...
[2026-02-01 08:31:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 08:31:34] Running /usr/bin/apptainer --version
[2026-02-01 08:31:34] apptainer version 1.4.1-1.1
[2026-02-01 08:31:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 08:31:34] cosA121b
[2026-02-01 08:31:34] apptainer works
[2026-02-01 08:31:34] Set ATHENA_PROC_NUMBER=3
[2026-02-01 08:31:34] Set ATHENA_CORE_NUMBER=3
[2026-02-01 08:31:34] Starting ATLAS job with PandaID=6991148671
[2026-02-01 08:31:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 10:01:55]  *** The last 200 lines of the pilot log: ***
[2026-02-01 10:01:55]  direct_access_wan=False
[2026-02-01 10:01:55]  domain=
[2026-02-01 10:01:55]  filesize=294972
[2026-02-01 10:01:55]  filetype=log
[2026-02-01 10:01:55]  guid=ba8402f6-3427-44dd-ad46-ed5338366b89
[2026-02-01 10:01:55]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-01 10:01:55]  is_altstaged=None
[2026-02-01 10:01:55]  is_tar=False
[2026-02-01 10:01:55]  lfn=log.48318042._005203.job.log.tgz.1
[2026-02-01 10:01:55]  mtime=0
[2026-02-01 10:01:55]  protocol_id=None
[2026-02-01 10:01:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-01 10:01:55]  replicas=None
[2026-02-01 10:01:55]  scope=mc23_13p6TeV
[2026-02-01 10:01:55]  status=None
[2026-02-01 10:01:55]  status_code=0
[2026-02-01 10:01:55]  storage_token=
[2026-02-01 10:01:55]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6991148671/log.48318042._005203.job.log.tgz.1
[2026-02-01 10:01:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/9d/log.48318042._005203.job.log.tgz.1
[2026-02-01 10:01:55]  workdir=None
[2026-02-01 10:01:55] ]
[2026-02-01 10:01:55] 2026-02-01 09:00:50,476 | INFO     | transferring file log.48318042._005203.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6991148671/log.48318042._005203.job.log.tgz.1 to /local/data/boinc/
[2026-02-01 10:01:55] 2026-02-01 09:00:50,476 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6991148671/log.48318042._005203.job.log.tgz.1 /local/data/boinc/slots/0/log.48318042._0052
[2026-02-01 10:01:55] 2026-02-01 09:00:50,487 | INFO     | adding to output.list: log.48318042._005203.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/9d/log.48318042._005203.job.log.tg
[2026-02-01 10:01:55] 2026-02-01 09:00:50,487 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-01 10:01:55] 2026-02-01 09:00:50,487 | INFO     | summary of transferred files:
[2026-02-01 10:01:55] 2026-02-01 09:00:50,487 | INFO     |  -- lfn=log.48318042._005203.job.log.tgz.1, status_code=0, status=transferred
[2026-02-01 10:01:55] 2026-02-01 09:00:50,487 | INFO     | stage-out finished correctly
[2026-02-01 10:01:55] 2026-02-01 09:00:50,517 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-01 10:01:55] 2026-02-01 09:00:52,080 | INFO     | time since job start (5349s) is within the limit (349056.0s)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,347 | INFO     | job 6991148671 has state=finished
[2026-02-01 10:01:55] 2026-02-01 09:00:52,347 | INFO     | preparing for final server update for job 6991148671 in state='finished'
[2026-02-01 10:01:55] 2026-02-01 09:00:52,347 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-6991148671/jobReport.json
[2026-02-01 10:01:55] 2026-02-01 09:00:52,348 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-02-01 10:01:55] 2026-02-01 09:00:52,349 | INFO     | this job has now completed (state=finished)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,349 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,349 | INFO     | log transfer has been attempted: DONE
[2026-02-01 10:01:55] 2026-02-01 09:00:52,349 | INFO     | job 6991148671 has finished - writing final server update
[2026-02-01 10:01:55] 2026-02-01 09:00:52,349 | INFO     | total number of processed events: 400 (read)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,350 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6991148671/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,350 | INFO     | extracted standard info from prmon json
[2026-02-01 10:01:55] 2026-02-01 09:00:52,350 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 10:01:55] 2026-02-01 09:00:52,350 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 10:01:55] 2026-02-01 09:00:52,350 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 10:01:55] 2026-02-01 09:00:52,350 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | fitting pss+swap vs Time
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | sum of square deviations: 164765880.0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | sum of deviations: -17221826525.000008
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | mean x: 1769933865.0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | mean y: 2504403.962962963
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | intersect: 185001328090.9592
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | chi2: 0.07703440473312655
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | current memory leak: -104.52 B/s (using 81 data points, chi2=0.08)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | could have reported an average CPU frequency of 3704 MHz (6 samples)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | ..............................
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | . Timing measurements:
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | . get job = 0 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | . initial setup = 3 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,351 | INFO     | . payload setup = 2 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,352 | INFO     | . stage-in = 0 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,352 | INFO     | . payload execution = 5328 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,352 | INFO     | . stage-out = 0 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,352 | INFO     | . log creation = 0 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,352 | INFO     | ..............................
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | 
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | job summary report
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | --------------------------------------------------
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | PanDA job id: 6991148671
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | task id: 48318042
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | errors: (none)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | pilot state: finished 
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | transexitcode: 0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | exeerrorcode: 0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | exeerrordiag: 
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | exitcode: 0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | exitmsg: OK
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | cpuconsumptiontime: 15372 s
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | nevents: 400
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | neventsw: 0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | pid: 712764
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | pgrp: 712764
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | corecount: 3
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | event service: False
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | sizes: {0: 2278289, 11: 2278289, 5335: 2304881, 5336: 2313941, 5338: 2314079}
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | --------------------------------------------------
[2026-02-01 10:01:55] 2026-02-01 09:00:52,608 | INFO     | 
[2026-02-01 10:01:55] 2026-02-01 09:00:52,609 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | job 6991148671 has completed (purged errors)
[2026-02-01 10:01:55] 2026-02-01 09:00:52,622 | INFO     | overall cleanup function is called
[2026-02-01 10:01:55] 2026-02-01 09:00:53,628 | INFO     | --- collectZombieJob: --- 10, [712764]
[2026-02-01 10:01:55] 2026-02-01 09:00:53,628 | INFO     | zombie collector waiting for pid 712764
[2026-02-01 10:01:55] 2026-02-01 09:00:53,628 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 10:01:55] 2026-02-01 09:00:53,628 | INFO     | collected zombie processes
[2026-02-01 10:01:55] 2026-02-01 09:00:53,628 | INFO     | will attempt to kill all subprocesses of pid=712764
[2026-02-01 10:01:55] 2026-02-01 09:00:53,673 | INFO     | process IDs to be killed: [712764] (in reverse order)
[2026-02-01 10:01:55] 2026-02-01 09:00:53,698 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 10:01:55] 2026-02-01 09:00:53,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 10:01:55] 2026-02-01 09:00:53,700 | INFO     | did not find any defunct processes belonging to 712764
[2026-02-01 10:01:55] 2026-02-01 09:00:53,701 | INFO     | did not find any defunct processes belonging to 712764
[2026-02-01 10:01:55] 2026-02-01 09:00:53,701 | INFO     | ready for new job
[2026-02-01 10:01:55] 2026-02-01 09:00:53,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 10:01:55] 2026-02-01 09:00:53,702 | INFO     | **************************************
[2026-02-01 10:01:55] 2026-02-01 09:00:53,702 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 10:01:55] 2026-02-01 09:00:53,702 | INFO     | **************************************
[2026-02-01 10:01:55] 2026-02-01 09:00:53,702 | INFO     | 
[2026-02-01 10:01:55] 2026-02-01 09:00:53,702 | INFO     | architecture information:
[2026-02-01 10:01:55] 2026-02-01 09:00:53,702 | INFO     | executing command: cat /etc/os-release
[2026-02-01 10:01:55] 2026-02-01 09:00:53,711 | INFO     | cat /etc/os-release:
[2026-02-01 10:01:55] NAME="CentOS Linux"
[2026-02-01 10:01:55] VERSION="7 (Core)"
[2026-02-01 10:01:55] ID="centos"
[2026-02-01 10:01:55] ID_LIKE="rhel fedora"
[2026-02-01 10:01:55] VERSION_ID="7"
[2026-02-01 10:01:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 10:01:55] ANSI_COLOR="0;31"
[2026-02-01 10:01:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 10:01:55] HOME_URL="https://www.centos.org/"
[2026-02-01 10:01:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 10:01:55] 
[2026-02-01 10:01:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 10:01:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 10:01:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 10:01:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 10:01:55] 
[2026-02-01 10:01:55] 2026-02-01 09:00:53,711 | INFO     | **************************************
[2026-02-01 10:01:55] 2026-02-01 09:00:54,213 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | INFO     | sufficient remaining disk space (336257351680 B)
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | INFO     | update_server=False
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 10:01:55] 2026-02-01 09:00:54,223 | INFO     | aborting loop
[2026-02-01 10:01:55] 2026-02-01 09:00:54,266 | INFO     | all data control threads have been joined
[2026-02-01 10:01:55] 2026-02-01 09:00:54,878 | INFO     | all job control threads have been joined
[2026-02-01 10:01:55] 2026-02-01 09:00:55,211 | INFO     | all payload control threads have been joined
[2026-02-01 10:01:55] 2026-02-01 09:00:55,229 | INFO     | [job] retrieve thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,229 | INFO     | [job] queue monitor thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,229 | INFO     | [job] job monitor thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,235 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,271 | INFO     | [data] control thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,272 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,450 | INFO     | [data] copytool_in thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,564 | INFO     | [payload] validate_post thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:55,884 | INFO     | [job] control thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:56,204 | INFO     | job.realtimelogging is not enabled
[2026-02-01 10:01:55] 2026-02-01 09:00:56,217 | INFO     | [payload] control thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:56,229 | INFO     | [data] copytool_out thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:56,314 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:56,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 10:01:55] 2026-02-01 09:00:56,651 | INFO     | [job] validate thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:56,651 | INFO     | [payload] failed_post thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:00:57,210 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:01:00,555 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 10:01:55] 2026-02-01 09:01:25,247 | INFO     | PID=708342 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-01 10:01:55] 2026-02-01 09:01:25,247 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 10:01:55] 2026-02-01 09:01:25,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 10:01:55] 2026-02-01 09:01:25,247 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 10:01:55] 2026-02-01 09:01:40,048 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-02-01 10:01:55] 2026-02-01 09:01:49,291 | INFO     | [monitor] cgroup control has ended
[2026-02-01 10:01:55] 2026-02-01 09:01:50,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139949489796928)>', '<ExcThread(monitor, started 139948623656704)>']
[2026-02-01 10:01:55] 2026-02-01 09:01:51,366 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 10:01:55] 2026-02-01 09:01:51,366 | INFO     | [monitor] control thread has ended
[2026-02-01 10:01:55] 2026-02-01 09:01:55,802 | INFO     | all workflow threads have been joined
[2026-02-01 10:01:55] 2026-02-01 09:01:55,802 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 10:01:55] 2026-02-01 09:01:55,802 | INFO     | traces error code: 0
[2026-02-01 10:01:55] 2026-02-01 09:01:55,803 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 10:01:55] 2026-02-01 09:01:55,853 [wrapper] ==== pilot stdout END ====
[2026-02-01 10:01:55] 2026-02-01 09:01:55,855 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 10:01:55] 2026-02-01 09:01:55,858 [wrapper] pilotpid: 708342
[2026-02-01 10:01:55] 2026-02-01 09:01:55,860 [wrapper] Pilot exit status: 0
[2026-02-01 10:01:55] 2026-02-01 09:01:55,867 [wrapper] pandaids: 6991148671
[2026-02-01 10:01:55] 2026-02-01 09:01:55,884 [wrapper] cleanup supervisor_pilot  718734 708343
[2026-02-01 10:01:55] 2026-02-01 09:01:55,887 [wrapper] Test setup, not cleaning
[2026-02-01 10:01:55] 2026-02-01 09:01:55,889 [wrapper] apfmon messages muted
[2026-02-01 10:01:55] 2026-02-01 09:01:55,891 [wrapper] ==== wrapper stdout END ====
[2026-02-01 10:01:55] 2026-02-01 09:01:55,894 [wrapper] ==== wrapper stderr END ====
[2026-02-01 10:01:55]  *** Error codes and diagnostics ***
[2026-02-01 10:01:55]     "exeErrorCode": 0,
[2026-02-01 10:01:55]     "exeErrorDiag": "",
[2026-02-01 10:01:55]     "pilotErrorCode": 0,
[2026-02-01 10:01:55]     "pilotErrorDiag": "",
[2026-02-01 10:01:55]  *** Listing of results directory ***
[2026-02-01 10:01:55] total 678960
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc      5111 Jan 31 10:27 queuedata.json
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc    584422 Jan 31 10:27 pilot3.tar.gz
[2026-02-01 10:01:55] -rwx------ 1 boinc boinc     36322 Jan 31 10:27 runpilot2-wrapper.sh
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc       100 Feb  1 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 10:01:55] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 08:31 run_atlas
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc       105 Feb  1 08:31 job.xml
[2026-02-01 10:01:55] -rw-r--r-- 2 boinc boinc 504119703 Feb  1 08:31 EVNT.48318040._000099.pool.root.1
[2026-02-01 10:01:55] -rw-r--r-- 2 boinc boinc    597777 Feb  1 08:31 input.tar.gz
[2026-02-01 10:01:55] -rw-r--r-- 2 boinc boinc     15845 Feb  1 08:31 start_atlas.sh
[2026-02-01 10:01:55] drwxrwx--x 2 boinc boinc      4096 Feb  1 08:31 shared
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc         0 Feb  1 08:31 boinc_setup_complete
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc      6440 Feb  1 08:31 init_data.xml
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc         0 Feb  1 08:31 boinc_lockfile
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc      2536 Feb  1 08:31 pandaJob.out
[2026-02-01 10:01:55] -rw------- 1 boinc boinc   1010520 Feb  1 08:31 agis_schedconf.cvmfs.json
[2026-02-01 10:01:55] -rw------- 1 boinc boinc   1511668 Feb  1 08:31 agis_ddmendpoints.agis.ALL.json
[2026-02-01 10:01:55] -rw------- 1 boinc boinc       428 Feb  1 08:31 workernode_map.json
[2026-02-01 10:01:55] drwx------ 5 boinc boinc      4096 Feb  1 08:31 pilot3
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc       530 Feb  1 10:00 boinc_task_state.xml
[2026-02-01 10:01:55] -rw------- 1 boinc boinc 185038569 Feb  1 10:00 HITS.48318042._005203.pool.root.1
[2026-02-01 10:01:55] -rw------- 1 boinc boinc      1020 Feb  1 10:00 memory_monitor_summary.json
[2026-02-01 10:01:55] -rw------- 1 boinc boinc    294972 Feb  1 10:00 log.48318042._005203.job.log.tgz.1
[2026-02-01 10:01:55] -rw------- 1 boinc boinc      6319 Feb  1 10:00 heartbeat.json
[2026-02-01 10:01:55] -rw------- 1 boinc boinc        95 Feb  1 10:01 pilot_heartbeat.json
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc      8192 Feb  1 10:01 boinc_mmap_file
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc        27 Feb  1 10:01 wrapper_checkpoint.txt
[2026-02-01 10:01:55] -rw------- 1 boinc boinc      4819 Feb  1 10:01 pilotlog.txt
[2026-02-01 10:01:55] -rw------- 1 boinc boinc    777915 Feb  1 10:01 log.48318042._005203.job.log.1
[2026-02-01 10:01:55] -rw------- 1 boinc boinc       357 Feb  1 10:01 output.list
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc       620 Feb  1 10:01 runtime_log
[2026-02-01 10:01:55] -rw------- 1 boinc boinc   1095680 Feb  1 10:01 result.tar.gz
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc      8906 Feb  1 10:01 runtime_log.err
[2026-02-01 10:01:55] -rw------- 1 boinc boinc       659 Feb  1 10:01 DuHMDmtRM68n9Rq4apOajLDm4fhM0noT9bVooX4SDmVHNKDmySCRVo.diag
[2026-02-01 10:01:55] -rw-r--r-- 1 boinc boinc     20979 Feb  1 10:01 stderr.txt
[2026-02-01 10:01:55] HITS file was successfully produced:
[2026-02-01 10:01:55] -rw------- 1 boinc boinc 185038569 Feb  1 10:00 shared/HITS.pool.root.1
[2026-02-01 10:01:55]  *** Contents of shared directory: ***
[2026-02-01 10:01:55] total 674692
[2026-02-01 10:01:55] -rw-r--r-- 2 boinc boinc 504119703 Feb  1 08:31 ATLAS.root_0
[2026-02-01 10:01:55] -rw-r--r-- 2 boinc boinc    597777 Feb  1 08:31 input.tar.gz
[2026-02-01 10:01:55] -rw-r--r-- 2 boinc boinc     15845 Feb  1 08:31 start_atlas.sh
[2026-02-01 10:01:55] -rw------- 1 boinc boinc 185038569 Feb  1 10:00 HITS.pool.root.1
[2026-02-01 10:01:55] -rw------- 1 boinc boinc   1095680 Feb  1 10:01 result.tar.gz
10:01:57 (704297): run_atlas exited; CPU time 15402.402799
10:01:57 (704297): called boinc_finish(0)

</stderr_txt>
]]>

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