Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:34:07 (2580508): wrapper (7.7.26015): starting
03:34:07 (2580508): wrapper: running run_atlas (--nthreads 3)
[2026-02-01 03:34:07] Arguments: --nthreads 3
[2026-02-01 03:34:07] Threads: 3
[2026-02-01 03:34:07] Checking for CVMFS
[2026-02-01 03:34:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 03:34:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 03:34:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 03:34:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 03:34:08] 2.9.2.0 1802738 4962 82220 155734 1 50 19206232 36864001 0 130560 0 2241359 99.987 152094 6536 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 03:34:08] CVMFS is ok
[2026-02-01 03:34:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 03:34:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 03:34:08] Further information can be found at the LHC@home message board.
[2026-02-01 03:34:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 03:34:08] Checking for apptainer binary...
[2026-02-01 03:34:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 03:34:08] Running /usr/bin/apptainer --version
[2026-02-01 03:34:08] apptainer version 1.4.1-1.1
[2026-02-01 03:34:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 03:34:08] thA331a
[2026-02-01 03:34:08] apptainer works
[2026-02-01 03:34:08] Set ATHENA_PROC_NUMBER=3
[2026-02-01 03:34:08] Set ATHENA_CORE_NUMBER=3
[2026-02-01 03:34:08] Starting ATLAS job with PandaID=6978386530
[2026-02-01 03:34:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 04:48:35]  *** The last 200 lines of the pilot log: ***
[2026-02-01 04:48:35] 2026-02-01 03:48:02,486 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 04:48:35] 2026-02-01 03:48:02,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 04:48:35] 2026-02-01 03:48:02,486 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 04:48:35] 2026-02-01 03:48:02,486 | INFO     | job 6978386530 has completed (purged errors)
[2026-02-01 04:48:35] 2026-02-01 03:48:02,486 | INFO     | overall cleanup function is called
[2026-02-01 04:48:35] 2026-02-01 03:48:03,492 | INFO     | --- collectZombieJob: --- 10, [2588980]
[2026-02-01 04:48:35] 2026-02-01 03:48:03,493 | INFO     | zombie collector waiting for pid 2588980
[2026-02-01 04:48:35] 2026-02-01 03:48:03,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 04:48:35] 2026-02-01 03:48:03,493 | INFO     | collected zombie processes
[2026-02-01 04:48:35] 2026-02-01 03:48:03,493 | INFO     | will attempt to kill all subprocesses of pid=2588980
[2026-02-01 04:48:35] 2026-02-01 03:48:03,533 | INFO     | process IDs to be killed: [2588980] (in reverse order)
[2026-02-01 04:48:35] 2026-02-01 03:48:03,557 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 04:48:35] 2026-02-01 03:48:03,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 04:48:35] 2026-02-01 03:48:03,558 | INFO     | did not find any defunct processes belonging to 2588980
[2026-02-01 04:48:35] 2026-02-01 03:48:03,559 | INFO     | did not find any defunct processes belonging to 2588980
[2026-02-01 04:48:35] 2026-02-01 03:48:03,560 | INFO     | ready for new job
[2026-02-01 04:48:35] 2026-02-01 03:48:03,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 04:48:35] 2026-02-01 03:48:03,560 | INFO     | **************************************
[2026-02-01 04:48:35] 2026-02-01 03:48:03,560 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 04:48:35] 2026-02-01 03:48:03,561 | INFO     | **************************************
[2026-02-01 04:48:35] 2026-02-01 03:48:03,561 | INFO     | 
[2026-02-01 04:48:35] 2026-02-01 03:48:03,561 | INFO     | architecture information:
[2026-02-01 04:48:35] 2026-02-01 03:48:03,561 | INFO     | executing command: cat /etc/os-release
[2026-02-01 04:48:35] 2026-02-01 03:48:03,569 | INFO     | cat /etc/os-release:
[2026-02-01 04:48:35] NAME="CentOS Linux"
[2026-02-01 04:48:35] VERSION="7 (Core)"
[2026-02-01 04:48:35] ID="centos"
[2026-02-01 04:48:35] ID_LIKE="rhel fedora"
[2026-02-01 04:48:35] VERSION_ID="7"
[2026-02-01 04:48:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 04:48:35] ANSI_COLOR="0;31"
[2026-02-01 04:48:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 04:48:35] HOME_URL="https://www.centos.org/"
[2026-02-01 04:48:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 04:48:35] 
[2026-02-01 04:48:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 04:48:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 04:48:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 04:48:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 04:48:35] 
[2026-02-01 04:48:35] 2026-02-01 03:48:03,570 | INFO     | **************************************
[2026-02-01 04:48:35] 2026-02-01 03:48:04,073 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 04:48:35] 2026-02-01 03:48:04,085 | INFO     | sufficient remaining disk space (338251743232 B)
[2026-02-01 04:48:35] 2026-02-01 03:48:04,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 04:48:35] 2026-02-01 03:48:04,086 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 04:48:35] 2026-02-01 03:48:04,086 | INFO     | update_server=False
[2026-02-01 04:48:35] 2026-02-01 03:48:04,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 04:48:35] 2026-02-01 03:48:04,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 04:48:35] 2026-02-01 03:48:04,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 04:48:35] 2026-02-01 03:48:04,154 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 04:48:35] 2026-02-01 03:48:04,154 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 04:48:35] 2026-02-01 03:48:04,155 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 04:48:35] 2026-02-01 03:48:04,155 | INFO     | will abort loop
[2026-02-01 04:48:35] 2026-02-01 03:48:04,263 | INFO     | all payload control threads have been joined
[2026-02-01 04:48:35] 2026-02-01 03:48:04,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 04:48:35] 2026-02-01 03:48:04,899 | INFO     | all data control threads have been joined
[2026-02-01 04:48:35] 2026-02-01 03:48:04,905 | INFO     | all job control threads have been joined
[2026-02-01 04:48:35] 2026-02-01 03:48:05,091 | INFO     | [job] retrieve thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,092 | INFO     | [job] queue monitor thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,160 | INFO     | [job] job monitor thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,269 | INFO     | [payload] control thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,306 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,529 | INFO     | [payload] validate_post thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,668 | INFO     | [job] validate thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,746 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,750 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,905 | INFO     | [data] control thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,911 | INFO     | [job] control thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:05,919 | INFO     | [data] copytool_in thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:06,210 | INFO     | [payload] failed_post thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:06,629 | INFO     | [data] copytool_out thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:08,093 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:14,141 | INFO     | job.realtimelogging is not enabled
[2026-02-01 04:48:35] 2026-02-01 03:48:15,147 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 04:48:35] 2026-02-01 03:48:22,745 | INFO     | [monitor] cgroup control has ended
[2026-02-01 04:48:35] 2026-02-01 03:48:24,487 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670042588992)>', '<ExcThread(monitor, started 139669534643968)>']
[2026-02-01 04:48:35] 2026-02-01 03:48:29,513 | INFO     | all workflow threads have been joined
[2026-02-01 04:48:35] 2026-02-01 03:48:29,513 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 04:48:35] 2026-02-01 03:48:29,513 | INFO     | traces error code: 0
[2026-02-01 04:48:35] 2026-02-01 03:48:29,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 04:48:35] 2026-02-01 03:48:35,144 | INFO     | PID=2584559 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 04:48:35] 2026-02-01 03:48:35,144 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 04:48:35] 2026-02-01 03:48:35,144 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 04:48:35] 2026-02-01 03:48:35,144 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 04:48:35] 2026-02-01 03:48:35,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 04:48:35] 2026-02-01 03:48:35,144 | INFO     | [monitor] control thread has ended
[2026-02-01 04:48:35] 2026-02-01 03:48:35,190 [wrapper] ==== pilot stdout END ====
[2026-02-01 04:48:35] 2026-02-01 03:48:35,193 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 04:48:35] 2026-02-01 03:48:35,195 [wrapper] pilotpid: 2584559
[2026-02-01 04:48:35] 2026-02-01 03:48:35,197 [wrapper] Pilot exit status: 0
[2026-02-01 04:48:35] 2026-02-01 03:48:35,205 [wrapper] pandaids: 6978386530
[2026-02-01 04:48:35] 2026-02-01 03:48:35,220 [wrapper] cleanup supervisor_pilot 2593870 2584560
[2026-02-01 04:48:35] 2026-02-01 03:48:35,222 [wrapper] Test setup, not cleaning
[2026-02-01 04:48:35] 2026-02-01 03:48:35,224 [wrapper] apfmon messages muted
[2026-02-01 04:48:35] 2026-02-01 03:48:35,227 [wrapper] ==== wrapper stdout END ====
[2026-02-01 04:48:35] 2026-02-01 03:48:35,229 [wrapper] ==== wrapper stderr END ====
[2026-02-01 04:48:35]  *** Error codes and diagnostics ***
[2026-02-01 04:48:35]     "exeErrorCode": 0,
[2026-02-01 04:48:35]     "exeErrorDiag": "",
[2026-02-01 04:48:35]     "pilotErrorCode": 0,
[2026-02-01 04:48:35]     "pilotErrorDiag": "",
[2026-02-01 04:48:35]  *** Listing of results directory ***
[2026-02-01 04:48:35] total 673772
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc    584422 Jan 23 10:46 pilot3.tar.gz
[2026-02-01 04:48:35] -rwx------ 1 boinc boinc     36322 Jan 23 10:46 runpilot2-wrapper.sh
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc      5111 Jan 23 10:48 queuedata.json
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc       100 Feb  1 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 04:48:35] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 03:34 run_atlas
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc       105 Feb  1 03:34 job.xml
[2026-02-01 04:48:35] -rw-r--r-- 2 boinc boinc 506634526 Feb  1 03:34 EVNT.48310824._000024.pool.root.1
[2026-02-01 04:48:35] -rw-r--r-- 2 boinc boinc    597751 Feb  1 03:34 input.tar.gz
[2026-02-01 04:48:35] -rw-r--r-- 2 boinc boinc     15845 Feb  1 03:34 start_atlas.sh
[2026-02-01 04:48:35] drwxrwx--x 2 boinc boinc      4096 Feb  1 03:34 shared
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc         0 Feb  1 03:34 boinc_setup_complete
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc      6441 Feb  1 03:34 init_data.xml
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc         0 Feb  1 03:34 boinc_lockfile
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc      2525 Feb  1 03:34 pandaJob.out
[2026-02-01 04:48:35] -rw------- 1 boinc boinc   1010520 Feb  1 03:34 agis_schedconf.cvmfs.json
[2026-02-01 04:48:35] -rw------- 1 boinc boinc   1511668 Feb  1 03:34 agis_ddmendpoints.agis.ALL.json
[2026-02-01 04:48:35] -rw------- 1 boinc boinc       428 Feb  1 03:34 workernode_map.json
[2026-02-01 04:48:35] drwx------ 5 boinc boinc      4096 Feb  1 03:34 pilot3
[2026-02-01 04:48:35] -rw------- 1 boinc boinc        95 Feb  1 04:47 pilot_heartbeat.json
[2026-02-01 04:48:35] -rw------- 1 boinc boinc 177506767 Feb  1 04:47 HITS.48310826._001096.pool.root.1
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc       530 Feb  1 04:47 boinc_task_state.xml
[2026-02-01 04:48:35] -rw------- 1 boinc boinc      1021 Feb  1 04:47 memory_monitor_summary.json
[2026-02-01 04:48:35] -rw------- 1 boinc boinc    283300 Feb  1 04:48 log.48310826._001096.job.log.tgz.1
[2026-02-01 04:48:35] -rw------- 1 boinc boinc      6318 Feb  1 04:48 heartbeat.json
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc        27 Feb  1 04:48 wrapper_checkpoint.txt
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc      8192 Feb  1 04:48 boinc_mmap_file
[2026-02-01 04:48:35] -rw------- 1 boinc boinc       747 Feb  1 04:48 pilotlog.txt
[2026-02-01 04:48:35] -rw------- 1 boinc boinc    654772 Feb  1 04:48 log.48310826._001096.job.log.1
[2026-02-01 04:48:35] -rw------- 1 boinc boinc       357 Feb  1 04:48 output.list
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc       620 Feb  1 04:48 runtime_log
[2026-02-01 04:48:35] -rw------- 1 boinc boinc    952320 Feb  1 04:48 result.tar.gz
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc      8901 Feb  1 04:48 runtime_log.err
[2026-02-01 04:48:35] -rw------- 1 boinc boinc       658 Feb  1 04:48 CEMKDmqvS38nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGQ2KDmiPBKyn.diag
[2026-02-01 04:48:35] -rw-r--r-- 1 boinc boinc     11432 Feb  1 04:48 stderr.txt
[2026-02-01 04:48:35] HITS file was successfully produced:
[2026-02-01 04:48:35] -rw------- 1 boinc boinc 177506767 Feb  1 04:47 shared/HITS.pool.root.1
[2026-02-01 04:48:35]  *** Contents of shared directory: ***
[2026-02-01 04:48:35] total 669652
[2026-02-01 04:48:35] -rw-r--r-- 2 boinc boinc 506634526 Feb  1 03:34 ATLAS.root_0
[2026-02-01 04:48:35] -rw-r--r-- 2 boinc boinc    597751 Feb  1 03:34 input.tar.gz
[2026-02-01 04:48:35] -rw-r--r-- 2 boinc boinc     15845 Feb  1 03:34 start_atlas.sh
[2026-02-01 04:48:35] -rw------- 1 boinc boinc 177506767 Feb  1 04:47 HITS.pool.root.1
[2026-02-01 04:48:35] -rw------- 1 boinc boinc    952320 Feb  1 04:48 result.tar.gz
04:48:37 (2580508): run_atlas exited; CPU time 12636.108806
04:48:37 (2580508): called boinc_finish(0)

</stderr_txt>
]]>

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