Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:17:19 (2400085): wrapper (7.7.26015): starting
06:17:19 (2400085): wrapper: running run_atlas (--nthreads 2)
[2026-02-01 06:17:19] Arguments: --nthreads 2
[2026-02-01 06:17:19] Threads: 2
[2026-02-01 06:17:19] Checking for CVMFS
[2026-02-01 06:17:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-01 06:17:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-01 06:17:19] Running cvmfs_config stat atlas.cern.ch
[2026-02-01 06:17:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-01 06:17:19] 2.9.2.0 1886763 5101 59796 155740 2 49 21467915 36864000 0 130560 0 1509926 99.981 158504 9564 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-01 06:17:19] CVMFS is ok
[2026-02-01 06:17:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-01 06:17:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-01 06:17:19] Further information can be found at the LHC@home message board.
[2026-02-01 06:17:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-01 06:17:19] Checking for apptainer binary...
[2026-02-01 06:17:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-01 06:17:19] Running /usr/bin/apptainer --version
[2026-02-01 06:17:19] apptainer version 1.4.1-1.1
[2026-02-01 06:17:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-01 06:17:19] madmaxA277a
[2026-02-01 06:17:19] apptainer works
[2026-02-01 06:17:19] Set ATHENA_PROC_NUMBER=2
[2026-02-01 06:17:19] Set ATHENA_CORE_NUMBER=2
[2026-02-01 06:17:19] Starting ATLAS job with PandaID=6994616386
[2026-02-01 06:17:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 09:06:02]  *** The last 200 lines of the pilot log: ***
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 09:06:02] 2026-02-01 08:05:09,957 | INFO     | job 6994616386 has completed (purged errors)
[2026-02-01 09:06:02] 2026-02-01 08:05:09,958 | INFO     | overall cleanup function is called
[2026-02-01 09:06:02] 2026-02-01 08:05:10,964 | INFO     | --- collectZombieJob: --- 10, [2408511]
[2026-02-01 09:06:02] 2026-02-01 08:05:10,964 | INFO     | zombie collector waiting for pid 2408511
[2026-02-01 09:06:02] 2026-02-01 08:05:10,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 09:06:02] 2026-02-01 08:05:10,965 | INFO     | collected zombie processes
[2026-02-01 09:06:02] 2026-02-01 08:05:10,965 | INFO     | will attempt to kill all subprocesses of pid=2408511
[2026-02-01 09:06:02] 2026-02-01 08:05:10,996 | INFO     | process IDs to be killed: [2408511] (in reverse order)
[2026-02-01 09:06:02] 2026-02-01 08:05:11,015 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 09:06:02] 2026-02-01 08:05:11,015 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 09:06:02] 2026-02-01 08:05:11,016 | INFO     | did not find any defunct processes belonging to 2408511
[2026-02-01 09:06:02] 2026-02-01 08:05:11,017 | INFO     | did not find any defunct processes belonging to 2408511
[2026-02-01 09:06:02] 2026-02-01 08:05:11,017 | INFO     | ready for new job
[2026-02-01 09:06:02] 2026-02-01 08:05:11,017 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 09:06:02] 2026-02-01 08:05:11,017 | INFO     | **************************************
[2026-02-01 09:06:02] 2026-02-01 08:05:11,017 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 09:06:02] 2026-02-01 08:05:11,018 | INFO     | **************************************
[2026-02-01 09:06:02] 2026-02-01 08:05:11,018 | INFO     | 
[2026-02-01 09:06:02] 2026-02-01 08:05:11,018 | INFO     | architecture information:
[2026-02-01 09:06:02] 2026-02-01 08:05:11,018 | INFO     | executing command: cat /etc/os-release
[2026-02-01 09:06:02] 2026-02-01 08:05:11,026 | INFO     | cat /etc/os-release:
[2026-02-01 09:06:02] NAME="CentOS Linux"
[2026-02-01 09:06:02] VERSION="7 (Core)"
[2026-02-01 09:06:02] ID="centos"
[2026-02-01 09:06:02] ID_LIKE="rhel fedora"
[2026-02-01 09:06:02] VERSION_ID="7"
[2026-02-01 09:06:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 09:06:02] ANSI_COLOR="0;31"
[2026-02-01 09:06:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 09:06:02] HOME_URL="https://www.centos.org/"
[2026-02-01 09:06:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 09:06:02] 
[2026-02-01 09:06:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 09:06:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 09:06:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 09:06:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 09:06:02] 
[2026-02-01 09:06:02] 2026-02-01 08:05:11,026 | INFO     | **************************************
[2026-02-01 09:06:02] 2026-02-01 08:05:11,529 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | INFO     | sufficient remaining disk space (494577647616 B)
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | INFO     | update_server=False
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 09:06:02] 2026-02-01 08:05:11,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 09:06:02] 2026-02-01 08:05:11,541 | INFO     | aborting loop
[2026-02-01 09:06:02] 2026-02-01 08:05:11,731 | INFO     | all payload control threads have been joined
[2026-02-01 09:06:02] 2026-02-01 08:05:12,042 | INFO     | all data control threads have been joined
[2026-02-01 09:06:02] 2026-02-01 08:05:12,530 | INFO     | job.realtimelogging is not enabled
[2026-02-01 09:06:02] 2026-02-01 08:05:12,544 | INFO     | [job] queue monitor thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:12,544 | INFO     | [job] retrieve thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:12,546 | INFO     | [job] job monitor thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:12,592 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:12,647 | INFO     | all job control threads have been joined
[2026-02-01 09:06:02] 2026-02-01 08:05:12,737 | INFO     | [payload] control thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:12,752 | INFO     | [data] copytool_in thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:12,922 | INFO     | [payload] validate_post thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,032 | INFO     | [payload] failed_post thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,048 | INFO     | [data] control thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,536 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,546 | INFO     | [data] copytool_out thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,656 | INFO     | [job] control thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,798 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,923 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:13,936 | INFO     | [job] validate thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:15,547 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 09:06:02] 2026-02-01 08:05:42,238 | INFO     | PID=2404105 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-01 09:06:02] 2026-02-01 08:05:42,238 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 09:06:02] 2026-02-01 08:05:42,238 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 09:06:02] 2026-02-01 08:05:42,238 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 09:06:02] 2026-02-01 08:05:55,597 | INFO     | [monitor] cgroup control has ended
[2026-02-01 09:06:02] 2026-02-01 08:05:57,287 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274411894592)>', '<ExcThread(monitor, started 140273522812672)>']
[2026-02-01 09:06:02] 2026-02-01 08:05:57,316 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 09:06:02] 2026-02-01 08:05:57,317 | INFO     | [monitor] control thread has ended
[2026-02-01 09:06:02] 2026-02-01 08:06:02,313 | INFO     | all workflow threads have been joined
[2026-02-01 09:06:02] 2026-02-01 08:06:02,313 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 09:06:02] 2026-02-01 08:06:02,314 | INFO     | traces error code: 0
[2026-02-01 09:06:02] 2026-02-01 08:06:02,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 09:06:02] 2026-02-01 08:06:02,356 [wrapper] ==== pilot stdout END ====
[2026-02-01 09:06:02] 2026-02-01 08:06:02,358 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 09:06:02] 2026-02-01 08:06:02,360 [wrapper] pilotpid: 2404105
[2026-02-01 09:06:02] 2026-02-01 08:06:02,362 [wrapper] Pilot exit status: 0
[2026-02-01 09:06:02] 2026-02-01 08:06:02,368 [wrapper] pandaids: 6994616386
[2026-02-01 09:06:02] 2026-02-01 08:06:02,381 [wrapper] cleanup supervisor_pilot 2413888 2404106
[2026-02-01 09:06:02] 2026-02-01 08:06:02,383 [wrapper] Test setup, not cleaning
[2026-02-01 09:06:02] 2026-02-01 08:06:02,385 [wrapper] apfmon messages muted
[2026-02-01 09:06:02] 2026-02-01 08:06:02,387 [wrapper] ==== wrapper stdout END ====
[2026-02-01 09:06:02] 2026-02-01 08:06:02,389 [wrapper] ==== wrapper stderr END ====
[2026-02-01 09:06:02]  *** Error codes and diagnostics ***
[2026-02-01 09:06:02]     "exeErrorCode": 0,
[2026-02-01 09:06:02]     "exeErrorDiag": "",
[2026-02-01 09:06:02]     "pilotErrorCode": 0,
[2026-02-01 09:06:02]     "pilotErrorDiag": "",
[2026-02-01 09:06:02]  *** Listing of results directory ***
[2026-02-01 09:06:02] total 895568
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc    584422 Jan 31 13:07 pilot3.tar.gz
[2026-02-01 09:06:02] -rwx------ 1 boinc boinc     36322 Jan 31 13:07 runpilot2-wrapper.sh
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc      5111 Jan 31 13:11 queuedata.json
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc       100 Feb  1 06:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 09:06:02] -rwxr-xr-x 1 boinc boinc      7986 Feb  1 06:17 run_atlas
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc       105 Feb  1 06:17 job.xml
[2026-02-01 09:06:02] -rw-r--r-- 2 boinc boinc 652773749 Feb  1 06:17 EVNT.48431078._000080.pool.root.1
[2026-02-01 09:06:02] -rw-r--r-- 2 boinc boinc    597768 Feb  1 06:17 input.tar.gz
[2026-02-01 09:06:02] -rw-r--r-- 2 boinc boinc     15845 Feb  1 06:17 start_atlas.sh
[2026-02-01 09:06:02] drwxrwx--x 2 boinc boinc      4096 Feb  1 06:17 shared
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc         0 Feb  1 06:17 boinc_setup_complete
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc      6210 Feb  1 06:17 init_data.xml
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc         0 Feb  1 06:17 boinc_lockfile
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc      2557 Feb  1 06:17 pandaJob.out
[2026-02-01 09:06:02] -rw------- 1 boinc boinc   1010528 Feb  1 06:17 agis_schedconf.cvmfs.json
[2026-02-01 09:06:02] -rw------- 1 boinc boinc   1511668 Feb  1 06:17 agis_ddmendpoints.agis.ALL.json
[2026-02-01 09:06:02] -rw------- 1 boinc boinc       423 Feb  1 06:17 workernode_map.json
[2026-02-01 09:06:02] drwx------ 5 boinc boinc      4096 Feb  1 06:17 pilot3
[2026-02-01 09:06:02] -rw------- 1 boinc boinc 256909070 Feb  1 09:04 HITS.48431080._004046.pool.root.1
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc       531 Feb  1 09:04 boinc_task_state.xml
[2026-02-01 09:06:02] -rw------- 1 boinc boinc      1019 Feb  1 09:05 memory_monitor_summary.json
[2026-02-01 09:06:02] -rw------- 1 boinc boinc    302095 Feb  1 09:05 log.48431080._004046.job.log.tgz.1
[2026-02-01 09:06:02] -rw------- 1 boinc boinc      6317 Feb  1 09:05 heartbeat.json
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc      8192 Feb  1 09:05 boinc_mmap_file
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc        28 Feb  1 09:05 wrapper_checkpoint.txt
[2026-02-01 09:06:02] -rw------- 1 boinc boinc        95 Feb  1 09:05 pilot_heartbeat.json
[2026-02-01 09:06:02] -rw------- 1 boinc boinc      4820 Feb  1 09:06 pilotlog.txt
[2026-02-01 09:06:02] -rw------- 1 boinc boinc   1424038 Feb  1 09:06 log.48431080._004046.job.log.1
[2026-02-01 09:06:02] -rw------- 1 boinc boinc       357 Feb  1 09:06 output.list
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc       620 Feb  1 09:06 runtime_log
[2026-02-01 09:06:02] -rw------- 1 boinc boinc   1740800 Feb  1 09:06 result.tar.gz
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc      8922 Feb  1 09:06 runtime_log.err
[2026-02-01 09:06:02] -rw------- 1 boinc boinc       665 Feb  1 09:06 2CoLDmfwO68n9Rq4apOajLDm4fhM0noT9bVooX4SDmkcNKDmKwOiIn.diag
[2026-02-01 09:06:02] -rw-r--r-- 1 boinc boinc     12444 Feb  1 09:06 stderr.txt
[2026-02-01 09:06:02] HITS file was successfully produced:
[2026-02-01 09:06:02] -rw------- 1 boinc boinc 256909070 Feb  1 09:04 shared/HITS.pool.root.1
[2026-02-01 09:06:02]  *** Contents of shared directory: ***
[2026-02-01 09:06:02] total 890672
[2026-02-01 09:06:02] -rw-r--r-- 2 boinc boinc 652773749 Feb  1 06:17 ATLAS.root_0
[2026-02-01 09:06:02] -rw-r--r-- 2 boinc boinc    597768 Feb  1 06:17 input.tar.gz
[2026-02-01 09:06:02] -rw-r--r-- 2 boinc boinc     15845 Feb  1 06:17 start_atlas.sh
[2026-02-01 09:06:02] -rw------- 1 boinc boinc 256909070 Feb  1 09:04 HITS.pool.root.1
[2026-02-01 09:06:02] -rw------- 1 boinc boinc   1740800 Feb  1 09:06 result.tar.gz
09:06:03 (2400085): run_atlas exited; CPU time 19716.417245
09:06:03 (2400085): called boinc_finish(0)

</stderr_txt>
]]>

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