Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:53:21 (531717): wrapper (7.7.26015): starting
06:53:21 (531717): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 06:53:21] Arguments: --nthreads 4
[2026-02-04 06:53:21] Threads: 4
[2026-02-04 06:53:21] Checking for CVMFS
[2026-02-04 06:53:21] No cvmfs_config command found, will try listing directly
[2026-02-04 06:53:21] CVMFS is ok
[2026-02-04 06:53:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 06:53:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 06:53:21] Further information can be found at the LHC@home message board.
[2026-02-04 06:53:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 06:53:21] Checking for apptainer binary...
[2026-02-04 06:53:21] which: no apptainer in ((null))
[2026-02-04 06:53:21] apptainer is not installed, using version from CVMFS
[2026-02-04 06:53:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 06:53:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-02-04 06:53:22] apptainer works
[2026-02-04 06:53:22] Set ATHENA_PROC_NUMBER=4
[2026-02-04 06:53:22] Set ATHENA_CORE_NUMBER=4
[2026-02-04 06:53:22] Starting ATLAS job with PandaID=6994438275
[2026-02-04 06:53:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 09:07:53]  *** The last 200 lines of the pilot log: ***
[2026-02-04 09:07:53] 2026-02-04 08:07:07,131 | INFO     | mean x: 1770188555.5
[2026-02-04 09:07:53] 2026-02-04 08:07:07,131 | INFO     | mean y: 2338607.507936508
[2026-02-04 09:07:53] 2026-02-04 08:07:07,131 | INFO     | intersect: 14372529505.115917
[2026-02-04 09:07:53] 2026-02-04 08:07:07,132 | INFO     | chi2: 0.0297364021471202
[2026-02-04 09:07:53] 2026-02-04 08:07:07,132 | INFO     | current chi2=0.0297364021471202 (change=97.31454756760965 %)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,132 | INFO     | sum of square deviations: 549294020.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | sum of deviations: -1667952829.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | mean x: 1770188708.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | mean y: 2331380.4545454546
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | intersect: 5377578799.6280775
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | chi2: 0.007149298736268611
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | current chi2=0.007149298736268611 (change=75.9577547381233 %)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,133 | INFO     | sum of square deviations: 483971865.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,134 | INFO     | sum of deviations: -206628868.50000006
[2026-02-04 09:07:53] 2026-02-04 08:07:07,134 | INFO     | mean x: 1770188860.5
[2026-02-04 09:07:53] 2026-02-04 08:07:07,134 | INFO     | mean y: 2327996.646551724
[2026-02-04 09:07:53] 2026-02-04 08:07:07,134 | INFO     | intersect: 758099453.0646216
[2026-02-04 09:07:53] 2026-02-04 08:07:07,135 | INFO     | chi2: 0.0013077079177234569
[2026-02-04 09:07:53] 2026-02-04 08:07:07,135 | INFO     | current chi2=0.0013077079177234569 (change=81.70858477224606 %)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,135 | INFO     | sum of square deviations: 424045160.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,135 | INFO     | sum of deviations: 343145556.99999994
[2026-02-04 09:07:53] 2026-02-04 08:07:07,136 | INFO     | mean x: 1770189013.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,136 | INFO     | mean y: 2326601.117117117
[2026-02-04 09:07:53] 2026-02-04 08:07:07,136 | INFO     | intersect: -1430144635.8170931
[2026-02-04 09:07:53] 2026-02-04 08:07:07,136 | INFO     | chi2: 0.0003339576287607719
[2026-02-04 09:07:53] 2026-02-04 08:07:07,136 | INFO     | current chi2=0.0003339576287607719 (change=74.4623685278172 %)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,136 | INFO     | sum of square deviations: 369281342.5
[2026-02-04 09:07:53] 2026-02-04 08:07:07,137 | INFO     | sum of deviations: 447737956.5
[2026-02-04 09:07:53] 2026-02-04 08:07:07,137 | INFO     | mean x: 1770189165.5
[2026-02-04 09:07:53] 2026-02-04 08:07:07,137 | INFO     | mean y: 2326325.254716981
[2026-02-04 09:07:53] 2026-02-04 08:07:07,137 | INFO     | intersect: -2143952915.9701774
[2026-02-04 09:07:53] 2026-02-04 08:07:07,137 | INFO     | chi2: 1.873353020405625e-05
[2026-02-04 09:07:53] 2026-02-04 08:07:07,137 | INFO     | current chi2=1.873353020405625e-05 (change=94.39044699365861 %)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,138 | INFO     | sum of square deviations: 319447850.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,138 | INFO     | sum of deviations: 383177112.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,138 | INFO     | mean x: 1770189318.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,138 | INFO     | mean y: 2326523.495049505
[2026-02-04 09:07:53] 2026-02-04 08:07:07,138 | INFO     | intersect: -2121012326.8509135
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | chi2: 1.8325926745010937e-05
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | current chi2=1.8325926745010937e-05 (change=2.175796310708466 %)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | left removable region: 60
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | sum of square deviations: 85136480.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | sum of deviations: 116547941.99999999
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | mean x: 1770190050.0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | mean y: 2327345.107692308
[2026-02-04 09:07:53] 2026-02-04 08:07:07,139 | INFO     | intersect: -2420981761.3573284
[2026-02-04 09:07:53] 2026-02-04 08:07:07,140 | INFO     | chi2: 1.062937769605575e-05
[2026-02-04 09:07:53] 2026-02-04 08:07:07,140 | INFO     | current memory leak: 1.37 B/s (using 65 data points, chi2=0.00)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,140 | INFO     | could have reported an average CPU frequency of 2748 MHz (8 samples)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,140 | INFO     | ..............................
[2026-02-04 09:07:53] 2026-02-04 08:07:07,140 | INFO     | . Timing measurements:
[2026-02-04 09:07:53] 2026-02-04 08:07:07,140 | INFO     | . get job = 0 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | . initial setup = 5 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | . payload setup = 5 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | . stage-in = 0 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | . payload execution = 7985 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | . stage-out = 0 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | . log creation = 0 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,141 | INFO     | ..............................
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | 
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | job summary report
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | --------------------------------------------------
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | PanDA job id: 6994438275
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | task id: 48317931
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | errors: (none)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,231 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | pilot state: finished 
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | transexitcode: 0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | exeerrorcode: 0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | exeerrordiag: 
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | exitcode: 0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | exitmsg: OK
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | cpuconsumptiontime: 30775 s
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | nevents: 400
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | neventsw: 0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | pid: 541423
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | pgrp: 541423
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | corecount: 4
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | event service: False
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | sizes: {0: 2278218, 11: 2278218, 7994: 2306303, 7996: 2315323, 7999: 2315573}
[2026-02-04 09:07:53] 2026-02-04 08:07:07,232 | INFO     | --------------------------------------------------
[2026-02-04 09:07:53] 2026-02-04 08:07:07,233 | INFO     | 
[2026-02-04 09:07:53] 2026-02-04 08:07:07,233 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2026-02-04 09:07:53] 2026-02-04 08:07:07,267 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,267 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,268 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,268 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,268 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,268 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,268 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,268 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,269 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,270 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,270 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,270 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,270 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,270 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 09:07:53] 2026-02-04 08:07:07,270 | INFO     | job 6994438275 has completed (purged errors)
[2026-02-04 09:07:53] 2026-02-04 08:07:07,271 | INFO     | overall cleanup function is called
[2026-02-04 09:07:53] 2026-02-04 08:07:08,121 | WARNING  | process 541423 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 09:07:53] 2026-02-04 08:07:08,281 | INFO     | --- collectZombieJob: --- 10, [541423]
[2026-02-04 09:07:53] 2026-02-04 08:07:08,281 | INFO     | zombie collector waiting for pid 541423
[2026-02-04 09:07:53] 2026-02-04 08:07:08,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 09:07:53] 2026-02-04 08:07:08,282 | INFO     | collected zombie processes
[2026-02-04 09:07:53] 2026-02-04 08:07:08,282 | INFO     | will attempt to kill all subprocesses of pid=541423
[2026-02-04 09:07:53] 2026-02-04 08:07:09,478 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 09:07:53] 2026-02-04 08:07:10,458 | INFO     | process IDs to be killed: [541423] (in reverse order)
[2026-02-04 09:07:53] 2026-02-04 08:07:10,710 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 09:07:53] 2026-02-04 08:07:10,710 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 09:07:53] 2026-02-04 08:07:10,792 | INFO     | did not find any defunct processes belonging to 541423
[2026-02-04 09:07:53] 2026-02-04 08:07:10,873 | INFO     | did not find any defunct processes belonging to 541423
[2026-02-04 09:07:53] 2026-02-04 08:07:10,873 | INFO     | ready for new job
[2026-02-04 09:07:53] 2026-02-04 08:07:10,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 09:07:53] 2026-02-04 08:07:10,876 | INFO     | **************************************
[2026-02-04 09:07:53] 2026-02-04 08:07:10,877 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 09:07:53] 2026-02-04 08:07:10,877 | INFO     | **************************************
[2026-02-04 09:07:53] 2026-02-04 08:07:10,877 | INFO     | 
[2026-02-04 09:07:53] 2026-02-04 08:07:10,887 | INFO     | architecture information:
[2026-02-04 09:07:53] 2026-02-04 08:07:10,888 | INFO     | executing command: cat /etc/os-release
[2026-02-04 09:07:53] 2026-02-04 08:07:10,913 | INFO     | cat /etc/os-release:
[2026-02-04 09:07:53] NAME="CentOS Linux"
[2026-02-04 09:07:53] VERSION="7 (Core)"
[2026-02-04 09:07:53] ID="centos"
[2026-02-04 09:07:53] ID_LIKE="rhel fedora"
[2026-02-04 09:07:53] VERSION_ID="7"
[2026-02-04 09:07:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 09:07:53] ANSI_COLOR="0;31"
[2026-02-04 09:07:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 09:07:53] HOME_URL="https://www.centos.org/"
[2026-02-04 09:07:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 09:07:53] 
[2026-02-04 09:07:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 09:07:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 09:07:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 09:07:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 09:07:53] 
[2026-02-04 09:07:53] 2026-02-04 08:07:10,914 | INFO     | **************************************
[2026-02-04 09:07:53] 2026-02-04 08:07:10,941 | INFO     | number of running child processes to parent process 541423: 1
[2026-02-04 09:07:53] 2026-02-04 08:07:10,942 | INFO     | maximum number of monitored processes: 6
[2026-02-04 09:07:53] 2026-02-04 08:07:10,942 | INFO     | aborting job monitoring since job object (job id=6994438275) has expired
[2026-02-04 09:07:53] 2026-02-04 08:07:11,416 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2026-02-04 09:07:53] 2026-02-04 08:07:11,442 | INFO     | sufficient remaining disk space (3236546215936 B)
[2026-02-04 09:07:53] 2026-02-04 08:07:11,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 09:07:53] 2026-02-04 08:07:11,443 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 09:07:53] 2026-02-04 08:07:11,443 | INFO     | update_server=False
[2026-02-04 09:07:53] 2026-02-04 08:07:11,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 09:07:53] 2026-02-04 08:07:11,444 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 09:07:53] 2026-02-04 08:07:11,444 | INFO     | will abort loop
[2026-02-04 09:07:53] 2026-02-04 08:07:11,632 | INFO     | all data control threads have been joined
[2026-02-04 09:07:53] 2026-02-04 08:07:12,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 09:07:53] 2026-02-04 08:07:12,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 09:07:53] 2026-02-04 08:07:12,348 | INFO     | all job control threads have been joined
[2026-02-04 09:07:53] 2026-02-04 08:07:12,448 | INFO     | [job] retrieve thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,450 | INFO     | [job] job monitor thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,590 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,638 | INFO     | [data] control thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,647 | INFO     | all payload control threads have been joined
[2026-02-04 09:07:53] 2026-02-04 08:07:12,648 | INFO     | [payload] validate_post thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,723 | INFO     | [data] copytool_in thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,853 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:12,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 09:07:53] 2026-02-04 08:07:13,246 | INFO     | [job] queue monitor thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:13,353 | INFO     | [job] control thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:13,368 | INFO     | [payload] failed_post thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:13,483 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:13,652 | INFO     | [payload] control thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:13,911 | INFO     | [job] validate thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:14,063 | INFO     | [data] copytool_out thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:16,900 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:21,505 | INFO     | job.realtimelogging is not enabled
[2026-02-04 09:07:53] 2026-02-04 08:07:22,510 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 09:07:53] 2026-02-04 08:07:39,711 | INFO     | PID=536052 has CPU usage=16.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-04 09:07:53] 2026-02-04 08:07:39,711 | INFO     | .. there are 18 such processes running
[2026-02-04 09:07:53] 2026-02-04 08:07:39,712 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 09:07:53] 2026-02-04 08:07:39,712 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 09:07:53] 2026-02-04 08:07:39,712 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 09:07:53] 2026-02-04 08:07:48,071 | INFO     | [monitor] cgroup control has ended
[2026-02-04 09:07:53] 2026-02-04 08:07:48,545 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22716232283968)>', '<ExcThread(monitor, started 22715991070464)>']
[2026-02-04 09:07:53] 2026-02-04 08:07:48,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 09:07:53] 2026-02-04 08:07:48,748 | INFO     | [monitor] control thread has ended
[2026-02-04 09:07:53] 2026-02-04 08:07:53,570 | INFO     | all workflow threads have been joined
[2026-02-04 09:07:53] 2026-02-04 08:07:53,570 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 09:07:53] 2026-02-04 08:07:53,570 | INFO     | traces error code: 0
[2026-02-04 09:07:53] 2026-02-04 08:07:53,571 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 09:07:53] 2026-02-04 08:07:53,709 [wrapper] ==== pilot stdout END ====
[2026-02-04 09:07:53] 2026-02-04 08:07:53,713 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 09:07:53] 2026-02-04 08:07:53,717 [wrapper] pilotpid: 536052
[2026-02-04 09:07:53] 2026-02-04 08:07:53,721 [wrapper] Pilot exit status: 0
[2026-02-04 09:07:53] 2026-02-04 08:07:53,737 [wrapper] pandaids: 6994438275
[2026-02-04 09:07:53] 2026-02-04 08:07:53,888 [wrapper] cleanup supervisor_pilot  873467 536053
[2026-02-04 09:07:53] 2026-02-04 08:07:53,892 [wrapper] Test setup, not cleaning
[2026-02-04 09:07:53] 2026-02-04 08:07:53,895 [wrapper] apfmon messages muted
[2026-02-04 09:07:53] 2026-02-04 08:07:53,899 [wrapper] ==== wrapper stdout END ====
[2026-02-04 09:07:53] 2026-02-04 08:07:53,903 [wrapper] ==== wrapper stderr END ====
[2026-02-04 09:07:53]  *** Error codes and diagnostics ***
[2026-02-04 09:07:53]     "exeErrorCode": 0,
[2026-02-04 09:07:53]     "exeErrorDiag": "",
[2026-02-04 09:07:53]     "pilotErrorCode": 0,
[2026-02-04 09:07:53]     "pilotErrorDiag": "",
[2026-02-04 09:07:53]  *** Listing of results directory ***
[2026-02-04 09:07:54] total 673152
[2026-02-04 09:07:54] -rwx------ 1 boinc boinc     36322 Jan 31 08:30 runpilot2-wrapper.sh
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc      5111 Jan 31 08:30 queuedata.json
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc    584422 Jan 31 08:31 pilot3.tar.gz
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc       100 Feb  4 05:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 09:07:54] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 05:01 run_atlas
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc       105 Feb  4 05:01 job.xml
[2026-02-04 09:07:54] -rw-r--r-- 2 boinc boinc 500759296 Feb  4 06:53 EVNT.48317929._000151.pool.root.1
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc      6687 Feb  4 06:53 init_data.xml
[2026-02-04 09:07:54] -rw-r--r-- 2 boinc boinc     15845 Feb  4 06:53 start_atlas.sh
[2026-02-04 09:07:54] drwxrwx--x 2 boinc boinc      4096 Feb  4 06:53 shared
[2026-02-04 09:07:54] -rw-r--r-- 2 boinc boinc    597753 Feb  4 06:53 input.tar.gz
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc         0 Feb  4 06:53 boinc_lockfile
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc      2509 Feb  4 06:53 pandaJob.out
[2026-02-04 09:07:54] -rw------- 1 boinc boinc   1009236 Feb  4 06:53 agis_schedconf.cvmfs.json
[2026-02-04 09:07:54] -rw------- 1 boinc boinc   1511668 Feb  4 06:53 agis_ddmendpoints.agis.ALL.json
[2026-02-04 09:07:54] -rw------- 1 boinc boinc       442 Feb  4 06:53 workernode_map.json
[2026-02-04 09:07:54] drwx------ 5 boinc boinc      4096 Feb  4 06:53 pilot3
[2026-02-04 09:07:54] -rw------- 1 boinc boinc 181718883 Feb  4 09:06 HITS.48317931._008480.pool.root.1
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc       531 Feb  4 09:06 boinc_task_state.xml
[2026-02-04 09:07:54] -rw------- 1 boinc boinc      1029 Feb  4 09:06 memory_monitor_summary.json
[2026-02-04 09:07:54] -rw------- 1 boinc boinc        95 Feb  4 09:07 pilot_heartbeat.json
[2026-02-04 09:07:54] -rw------- 1 boinc boinc    302621 Feb  4 09:07 log.48317931._008480.job.log.tgz.1
[2026-02-04 09:07:54] -rw------- 1 boinc boinc      6344 Feb  4 09:07 heartbeat.json
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc      8192 Feb  4 09:07 boinc_mmap_file
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc        27 Feb  4 09:07 wrapper_checkpoint.txt
[2026-02-04 09:07:54] -rw------- 1 boinc boinc      5192 Feb  4 09:07 pilotlog.txt
[2026-02-04 09:07:54] -rw------- 1 boinc boinc   1142472 Feb  4 09:07 log.48317931._008480.job.log.1
[2026-02-04 09:07:54] -rw------- 1 boinc boinc       357 Feb  4 09:07 output.list
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc       620 Feb  4 09:07 runtime_log
[2026-02-04 09:07:54] -rw------- 1 boinc boinc   1464320 Feb  4 09:07 result.tar.gz
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc      9204 Feb  4 09:07 runtime_log.err
[2026-02-04 09:07:54] -rw------- 1 boinc boinc       662 Feb  4 09:07 mf1KDmWcK68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmzMNKDmEFWNdm.diag
[2026-02-04 09:07:54] -rw-r--r-- 1 boinc boinc     20831 Feb  4 09:07 stderr.txt
[2026-02-04 09:07:54] HITS file was successfully produced:
[2026-02-04 09:07:54] -rw------- 1 boinc boinc 181718883 Feb  4 09:06 shared/HITS.pool.root.1
[2026-02-04 09:07:54]  *** Contents of shared directory: ***
[2026-02-04 09:07:54] total 668524
[2026-02-04 09:07:54] -rw-r--r-- 2 boinc boinc 500759296 Feb  4 06:53 ATLAS.root_0
[2026-02-04 09:07:54] -rw-r--r-- 2 boinc boinc     15845 Feb  4 06:53 start_atlas.sh
[2026-02-04 09:07:54] -rw-r--r-- 2 boinc boinc    597753 Feb  4 06:53 input.tar.gz
[2026-02-04 09:07:54] -rw------- 1 boinc boinc 181718883 Feb  4 09:06 HITS.pool.root.1
[2026-02-04 09:07:54] -rw------- 1 boinc boinc   1464320 Feb  4 09:07 result.tar.gz
09:07:55 (531717): run_atlas exited; CPU time 31247.461480
09:07:55 (531717): called boinc_finish(0)

</stderr_txt>
]]>

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