Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:42:02 (30888): wrapper (7.7.26015): starting
20:42:02 (30888): wrapper: running run_atlas (--nthreads 8)
[2026-01-31 20:42:02] Arguments: --nthreads 8
[2026-01-31 20:42:02] Threads: 8
[2026-01-31 20:42:02] Checking for CVMFS
[2026-01-31 20:42:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 20:42:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 20:42:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 20:42:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 20:42:06] 2.11.2.0 23754 67528 136308 155725 3 54 23615275 25165824 1027 130560 0 16074015 99.751 16847040 3021 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-31 20:42:06] CVMFS is ok
[2026-01-31 20:42:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 20:42:06] Checking for apptainer binary...
[2026-01-31 20:42:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 20:42:06] Running /usr/bin/apptainer --version
[2026-01-31 20:42:06] apptainer version 1.3.2-1.el7
[2026-01-31 20:42:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 20:42:26] cg-vwn493.simple-grid.lan
[2026-01-31 20:42:26] apptainer works
[2026-01-31 20:42:26] Set ATHENA_PROC_NUMBER=8
[2026-01-31 20:42:26] Set ATHENA_CORE_NUMBER=8
[2026-01-31 20:42:26] Starting ATLAS job with PandaID=6994436745
[2026-01-31 20:42:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-01 00:53:27]  *** The last 200 lines of the pilot log: ***
[2026-02-01 00:53:27] 2026-01-31 23:52:23,942 | INFO     | total number of processed events: 400 (read)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,944 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6994436745/memory_monitor_summary.json (trf name=prmon)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,945 | INFO     | extracted standard info from prmon json
[2026-02-01 00:53:27] 2026-01-31 23:52:23,945 | INFO     | extracted standard memory fields from prmon json
[2026-02-01 00:53:27] 2026-01-31 23:52:23,945 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-01 00:53:27] 2026-01-31 23:52:23,945 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-01 00:53:27] 2026-01-31 23:52:23,945 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-01 00:53:27] 2026-01-31 23:52:23,950 | INFO     | fitting pss+swap vs Time
[2026-02-01 00:53:27] 2026-01-31 23:52:23,951 | INFO     | sum of square deviations: 4024149870.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,953 | INFO     | sum of deviations: 124179258794.00002
[2026-02-01 00:53:27] 2026-01-31 23:52:23,953 | INFO     | mean x: 1769896341.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,953 | INFO     | mean y: 2413209.336170213
[2026-02-01 00:53:27] 2026-01-31 23:52:23,953 | INFO     | intersect: -54613946237.43381
[2026-02-01 00:53:27] 2026-01-31 23:52:23,953 | INFO     | chi2: 8.366894193562775
[2026-02-01 00:53:27] 2026-01-31 23:52:23,954 | INFO     | sum of square deviations: 3772712597.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,956 | INFO     | sum of deviations: 136718640315.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,956 | INFO     | mean x: 1769896188.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,956 | INFO     | mean y: 2420650.995652174
[2026-02-01 00:53:27] 2026-01-31 23:52:23,957 | INFO     | intersect: -64136522917.526695
[2026-02-01 00:53:27] 2026-01-31 23:52:23,957 | INFO     | chi2: 7.667955562509283
[2026-02-01 00:53:27] 2026-01-31 23:52:23,957 | INFO     | current chi2=7.667955562509283 (change=8.353621007795624 %)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,957 | INFO     | right removable region: 229
[2026-02-01 00:53:27] 2026-01-31 23:52:23,958 | INFO     | sum of square deviations: 3772712597.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,963 | INFO     | sum of deviations: 42597983844.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,963 | INFO     | mean x: 1769896493.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,963 | INFO     | mean y: 2462660.0086956522
[2026-02-01 00:53:27] 2026-01-31 23:52:23,963 | INFO     | intersect: -19981572775.297276
[2026-02-01 00:53:27] 2026-01-31 23:52:23,964 | INFO     | chi2: 3.2899521052132736
[2026-02-01 00:53:27] 2026-01-31 23:52:23,964 | INFO     | current chi2=3.2899521052132736 (change=60.678932599094416 %)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,964 | INFO     | sum of square deviations: 3531973200.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,966 | INFO     | sum of deviations: -14355095718.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,966 | INFO     | mean x: 1769896646.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,966 | INFO     | mean y: 2498654.3466666667
[2026-02-01 00:53:27] 2026-01-31 23:52:23,967 | INFO     | intersect: 7195938220.733286
[2026-02-01 00:53:27] 2026-01-31 23:52:23,967 | INFO     | chi2: 0.9418298749284382
[2026-02-01 00:53:27] 2026-01-31 23:52:23,967 | INFO     | current chi2=0.9418298749284382 (change=71.37253538019566 %)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,967 | INFO     | sum of square deviations: 3301699115.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,969 | INFO     | sum of deviations: -19656922704.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,969 | INFO     | mean x: 1769896798.5
[2026-02-01 00:53:27] 2026-01-31 23:52:23,969 | INFO     | mean y: 2502099.9318181816
[2026-02-01 00:53:27] 2026-01-31 23:52:23,970 | INFO     | intersect: 10539720468.800816
[2026-02-01 00:53:27] 2026-01-31 23:52:23,970 | INFO     | chi2: 0.873968676779532
[2026-02-01 00:53:27] 2026-01-31 23:52:23,970 | INFO     | current chi2=0.873968676779532 (change=7.205250115267614 %)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,970 | INFO     | left removable region: 30
[2026-02-01 00:53:27] 2026-01-31 23:52:23,971 | INFO     | sum of square deviations: 2443580700.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,972 | INFO     | sum of deviations: 7243190263.999999
[2026-02-01 00:53:27] 2026-01-31 23:52:23,972 | INFO     | mean x: 1769897073.0
[2026-02-01 00:53:27] 2026-01-31 23:52:23,972 | INFO     | mean y: 2503060.226130653
[2026-02-01 00:53:27] 2026-01-31 23:52:23,972 | INFO     | intersect: -5243773949.34253
[2026-02-01 00:53:27] 2026-01-31 23:52:23,973 | INFO     | chi2: 0.0005286367604011945
[2026-02-01 00:53:27] 2026-01-31 23:52:23,973 | INFO     | current memory leak: 2.96 B/s (using 199 data points, chi2=0.00)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | could have reported an average CPU frequency of 2249 MHz (12 samples)
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | ..............................
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . Timing measurements:
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . get job = 0 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . initial setup = 121 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . payload setup = 136 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . stage-in = 0 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . payload execution = 14446 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,974 | INFO     | . stage-out = 3 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,975 | INFO     | . log creation = 1 s
[2026-02-01 00:53:27] 2026-01-31 23:52:23,975 | INFO     | ..............................
[2026-02-01 00:53:27] 2026-01-31 23:52:24,099 | INFO     | 
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | job summary report
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | --------------------------------------------------
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | PanDA job id: 6994436745
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | task id: 48317931
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | errors: (none)
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | pilot state: finished 
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | transexitcode: 0
[2026-02-01 00:53:27] 2026-01-31 23:52:24,100 | INFO     | exeerrorcode: 0
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | exeerrordiag: 
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | exitcode: 0
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | exitmsg: OK
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | cpuconsumptiontime: 54063 s
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | nevents: 400
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | neventsw: 0
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | pid: 6896
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | pgrp: 6896
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | corecount: 8
[2026-02-01 00:53:27] 2026-01-31 23:52:24,101 | INFO     | event service: False
[2026-02-01 00:53:27] 2026-01-31 23:52:24,102 | INFO     | sizes: {0: 2277720, 1: 2278177, 2: 2278265, 12: 2278265, 14588: 2309092, 14593: 2318090, 14596: 2318274, 14599: 2318468}
[2026-02-01 00:53:27] 2026-01-31 23:52:24,102 | INFO     | --------------------------------------------------
[2026-02-01 00:53:27] 2026-01-31 23:52:24,102 | INFO     | 
[2026-02-01 00:53:27] 2026-01-31 23:52:24,102 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-02-01 00:53:27] 2026-01-31 23:52:24,692 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,692 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,692 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,692 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,693 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | job 6994436745 has completed (purged errors)
[2026-02-01 00:53:27] 2026-01-31 23:52:24,694 | INFO     | overall cleanup function is called
[2026-02-01 00:53:27] 2026-01-31 23:52:25,703 | INFO     | --- collectZombieJob: --- 10, [6896]
[2026-02-01 00:53:27] 2026-01-31 23:52:25,703 | INFO     | zombie collector waiting for pid 6896
[2026-02-01 00:53:27] 2026-01-31 23:52:25,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-01 00:53:27] 2026-01-31 23:52:25,703 | INFO     | collected zombie processes
[2026-02-01 00:53:27] 2026-01-31 23:52:25,703 | INFO     | will attempt to kill all subprocesses of pid=6896
[2026-02-01 00:53:27] 2026-01-31 23:52:25,770 | INFO     | process IDs to be killed: [6896] (in reverse order)
[2026-02-01 00:53:27] 2026-01-31 23:52:26,590 | WARNING  | found no corresponding commands to process id(s)
[2026-02-01 00:53:27] 2026-01-31 23:52:26,590 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-01 00:53:27] 2026-01-31 23:52:26,592 | INFO     | did not find any defunct processes belonging to 6896
[2026-02-01 00:53:27] 2026-01-31 23:52:26,594 | INFO     | did not find any defunct processes belonging to 6896
[2026-02-01 00:53:27] 2026-01-31 23:52:26,594 | INFO     | ready for new job
[2026-02-01 00:53:27] 2026-01-31 23:52:26,594 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-01 00:53:27] 2026-01-31 23:52:26,596 | INFO     | **************************************
[2026-02-01 00:53:27] 2026-01-31 23:52:26,596 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-01 00:53:27] 2026-01-31 23:52:26,596 | INFO     | **************************************
[2026-02-01 00:53:27] 2026-01-31 23:52:26,596 | INFO     | 
[2026-02-01 00:53:27] 2026-01-31 23:52:26,597 | INFO     | pilot is running in a VM
[2026-02-01 00:53:27] 2026-01-31 23:52:26,597 | INFO     | architecture information:
[2026-02-01 00:53:27] 2026-01-31 23:52:26,598 | INFO     | executing command: cat /etc/os-release
[2026-02-01 00:53:27] 2026-01-31 23:52:26,758 | INFO     | cat /etc/os-release:
[2026-02-01 00:53:27] NAME="CentOS Linux"
[2026-02-01 00:53:27] VERSION="7 (Core)"
[2026-02-01 00:53:27] ID="centos"
[2026-02-01 00:53:27] ID_LIKE="rhel fedora"
[2026-02-01 00:53:27] VERSION_ID="7"
[2026-02-01 00:53:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-01 00:53:27] ANSI_COLOR="0;31"
[2026-02-01 00:53:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-01 00:53:27] HOME_URL="https://www.centos.org/"
[2026-02-01 00:53:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-01 00:53:27] 
[2026-02-01 00:53:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-01 00:53:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-01 00:53:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-01 00:53:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-01 00:53:27] 
[2026-02-01 00:53:27] 2026-01-31 23:52:26,759 | INFO     | **************************************
[2026-02-01 00:53:27] 2026-01-31 23:52:27,262 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-02-01 00:53:27] 2026-01-31 23:52:27,481 | INFO     | sufficient remaining disk space (494927872000 B)
[2026-02-01 00:53:27] 2026-01-31 23:52:27,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-01 00:53:27] 2026-01-31 23:52:27,482 | INFO     | current server update state: UPDATING_FINAL
[2026-02-01 00:53:27] 2026-01-31 23:52:27,482 | INFO     | update_server=False
[2026-02-01 00:53:27] 2026-01-31 23:52:27,482 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-01 00:53:27] 2026-01-31 23:52:27,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-01 00:53:27] 2026-01-31 23:52:27,511 | INFO     | all payload control threads have been joined
[2026-02-01 00:53:27] 2026-01-31 23:52:27,516 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-01 00:53:27] 2026-01-31 23:52:27,516 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-01 00:53:27] 2026-01-31 23:52:27,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-01 00:53:27] 2026-01-31 23:52:27,516 | INFO     | will abort loop
[2026-02-01 00:53:27] 2026-01-31 23:52:28,164 | INFO     | all job control threads have been joined
[2026-02-01 00:53:27] 2026-01-31 23:52:28,236 | INFO     | all data control threads have been joined
[2026-02-01 00:53:27] 2026-01-31 23:52:28,491 | INFO     | [job] retrieve thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:28,517 | INFO     | [payload] control thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:28,522 | INFO     | [job] job monitor thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:28,523 | INFO     | [job] create_data_payload thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:28,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-01 00:53:27] 2026-01-31 23:52:28,825 | INFO     | [data] copytool_in thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:28,947 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,036 | INFO     | [payload] execute_payloads thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,113 | INFO     | [payload] validate_post thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-01 00:53:27] 2026-01-31 23:52:29,170 | INFO     | [job] control thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,242 | INFO     | [data] control thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,359 | INFO     | [payload] validate_pre thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,684 | INFO     | [job] validate thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:29,833 | INFO     | [payload] failed_post thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:30,121 | INFO     | [job] queue monitor thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:30,796 | INFO     | [data] copytool_out thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:31,496 | INFO     | [data] queue_monitor thread has finished
[2026-02-01 00:53:27] 2026-01-31 23:52:55,949 | INFO     | PID=2464 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-01 00:53:27] 2026-01-31 23:52:55,949 | INFO     | .. there are 2 such processes running
[2026-02-01 00:53:27] 2026-01-31 23:52:55,950 | INFO     | found 0 job(s) in 20 queues
[2026-02-01 00:53:27] 2026-01-31 23:52:55,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-01 00:53:27] 2026-01-31 23:52:55,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-01 00:53:27] 2026-01-31 23:53:17,028 | INFO     | [monitor] cgroup control has ended
[2026-02-01 00:53:27] 2026-01-31 23:53:17,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827212384064)>', '<ExcThread(monitor, started 139826921715456)>']
[2026-02-01 00:53:27] 2026-01-31 23:53:18,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-01 00:53:27] 2026-01-31 23:53:18,084 | INFO     | [monitor] control thread has ended
[2026-02-01 00:53:27] 2026-01-31 23:53:22,477 | INFO     | all workflow threads have been joined
[2026-02-01 00:53:27] 2026-01-31 23:53:22,477 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-01 00:53:27] 2026-01-31 23:53:22,477 | INFO     | traces error code: 0
[2026-02-01 00:53:27] 2026-01-31 23:53:22,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-01 00:53:27] 2026-01-31 23:53:22,860 [wrapper] ==== pilot stdout END ====
[2026-02-01 00:53:27] 2026-01-31 23:53:22,951 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-01 00:53:27] 2026-01-31 23:53:23,057 [wrapper] pilotpid: 2464
[2026-02-01 00:53:27] 2026-01-31 23:53:23,146 [wrapper] Pilot exit status: 0
[2026-02-01 00:53:27] 2026-01-31 23:53:23,611 [wrapper] pandaids: 6994436745
[2026-02-01 00:53:27] 2026-01-31 23:53:24,759 [wrapper] cleanup supervisor_pilot 12957 2465
[2026-02-01 00:53:27] 2026-01-31 23:53:24,913 [wrapper] Test setup, not cleaning
[2026-02-01 00:53:27] 2026-01-31 23:53:25,021 [wrapper] apfmon messages muted
[2026-02-01 00:53:27] 2026-01-31 23:53:25,093 [wrapper] ==== wrapper stdout END ====
[2026-02-01 00:53:27] 2026-01-31 23:53:25,180 [wrapper] ==== wrapper stderr END ====
[2026-02-01 00:53:27]  *** Error codes and diagnostics ***
[2026-02-01 00:53:27]     "exeErrorCode": 0,
[2026-02-01 00:53:27]     "exeErrorDiag": "",
[2026-02-01 00:53:27]     "pilotErrorCode": 0,
[2026-02-01 00:53:27]     "pilotErrorDiag": "",
[2026-02-01 00:53:27]  *** Listing of results directory ***
[2026-02-01 00:53:27] total 668776
[2026-02-01 00:53:27] -rwx------. 1 boinc boinc     36322 Jan 31 08:30 runpilot2-wrapper.sh
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc    584422 Jan 31 08:30 pilot3.tar.gz
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc      5111 Jan 31 08:30 queuedata.json
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc       100 Jan 31 20:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-01 00:53:27] -rwxr-xr-x. 1 boinc boinc      7986 Jan 31 20:42 run_atlas
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc       105 Jan 31 20:42 job.xml
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc      6390 Jan 31 20:42 init_data.xml
[2026-02-01 00:53:27] -rw-r--r--. 2 boinc boinc 497979899 Jan 31 20:42 EVNT.48317929._000138.pool.root.1
[2026-02-01 00:53:27] -rw-r--r--. 2 boinc boinc     15845 Jan 31 20:42 start_atlas.sh
[2026-02-01 00:53:27] drwxrwx--x. 2 boinc boinc        68 Jan 31 20:42 shared
[2026-02-01 00:53:27] -rw-r--r--. 2 boinc boinc    597751 Jan 31 20:42 input.tar.gz
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc         0 Jan 31 20:42 boinc_lockfile
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc      2510 Jan 31 20:42 pandaJob.out
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc       415 Jan 31 20:48 workernode_map.json
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc   1010528 Jan 31 20:48 agis_schedconf.cvmfs.json
[2026-02-01 00:53:27] drwx------. 5 boinc boinc      4096 Jan 31 20:48 pilot3
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc 177856472 Feb  1 00:50 HITS.48317931._007842.pool.root.1
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc       532 Feb  1 00:51 boinc_task_state.xml
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc      1011 Feb  1 00:52 memory_monitor_summary.json
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc   1511668 Feb  1 00:52 agis_ddmendpoints.agis.ALL.json
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc    469336 Feb  1 00:52 log.48317931._007842.job.log.tgz.1
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc      6316 Feb  1 00:52 heartbeat.json
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc        95 Feb  1 00:52 pilot_heartbeat.json
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc      8192 Feb  1 00:53 boinc_mmap_file
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc        28 Feb  1 00:53 wrapper_checkpoint.txt
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc      5065 Feb  1 00:53 pilotlog.txt
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc   2060648 Feb  1 00:53 log.48317931._007842.job.log.1
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc       357 Feb  1 00:53 output.list
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc       620 Feb  1 00:53 runtime_log
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc   2549760 Feb  1 00:53 result.tar.gz
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc      8816 Feb  1 00:53 runtime_log.err
[2026-02-01 00:53:27] -rw-------. 1 boinc boinc       655 Feb  1 00:53 KVMODm7bK68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmvJNKDmzcoFWn.diag
[2026-02-01 00:53:27] -rw-r--r--. 1 boinc boinc     20645 Feb  1 00:53 stderr.txt
[2026-02-01 00:53:28] HITS file was successfully produced:
[2026-02-01 00:53:28] -rw-------. 1 boinc boinc 177856472 Feb  1 00:50 shared/HITS.pool.root.1
[2026-02-01 00:53:28]  *** Contents of shared directory: ***
[2026-02-01 00:53:28] total 663092
[2026-02-01 00:53:28] -rw-r--r--. 2 boinc boinc 497979899 Jan 31 20:42 ATLAS.root_0
[2026-02-01 00:53:28] -rw-r--r--. 2 boinc boinc     15845 Jan 31 20:42 start_atlas.sh
[2026-02-01 00:53:28] -rw-r--r--. 2 boinc boinc    597751 Jan 31 20:42 input.tar.gz
[2026-02-01 00:53:28] -rw-------. 1 boinc boinc 177856472 Feb  1 00:50 HITS.pool.root.1
[2026-02-01 00:53:28] -rw-------. 1 boinc boinc   2549760 Feb  1 00:53 result.tar.gz
00:53:29 (30888): run_atlas exited; CPU time 54215.354806
00:53:29 (30888): called boinc_finish(0)

</stderr_txt>
]]>

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