Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:25:27 (691067): wrapper (7.7.26015): starting
22:25:27 (691067): wrapper: running run_atlas (--nthreads 3)
[2026-01-31 22:25:27] Arguments: --nthreads 3
[2026-01-31 22:25:27] Threads: 3
[2026-01-31 22:25:27] Checking for CVMFS
[2026-01-31 22:25:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 22:25:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 22:25:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 22:25:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 22:25:27] 2.9.2.0 4027610 4867 83916 155727 2 49 24931502 36864001 0 130560 0 2239724 99.987 145754 11618 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-31 22:25:27] CVMFS is ok
[2026-01-31 22:25:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 22:25:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 22:25:27] Further information can be found at the LHC@home message board.
[2026-01-31 22:25:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 22:25:27] Checking for apptainer binary...
[2026-01-31 22:25:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 22:25:27] Running /usr/bin/apptainer --version
[2026-01-31 22:25:27] apptainer version 1.4.1-1.1
[2026-01-31 22:25:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 22:25:27] magicA246a
[2026-01-31 22:25:27] apptainer works
[2026-01-31 22:25:27] Set ATHENA_PROC_NUMBER=3
[2026-01-31 22:25:27] Set ATHENA_CORE_NUMBER=3
[2026-01-31 22:25:27] Starting ATLAS job with PandaID=6994405211
[2026-01-31 22:25:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 23:40:01]  *** The last 200 lines of the pilot log: ***
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,691 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 23:40:01] 2026-01-31 22:39:29,692 | INFO     | job 6994405211 has completed (purged errors)
[2026-01-31 23:40:01] 2026-01-31 22:39:29,692 | INFO     | overall cleanup function is called
[2026-01-31 23:40:01] 2026-01-31 22:39:30,698 | INFO     | --- collectZombieJob: --- 10, [699527]
[2026-01-31 23:40:01] 2026-01-31 22:39:30,699 | INFO     | zombie collector waiting for pid 699527
[2026-01-31 23:40:01] 2026-01-31 22:39:30,699 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 23:40:01] 2026-01-31 22:39:30,699 | INFO     | collected zombie processes
[2026-01-31 23:40:01] 2026-01-31 22:39:30,699 | INFO     | will attempt to kill all subprocesses of pid=699527
[2026-01-31 23:40:01] 2026-01-31 22:39:30,755 | INFO     | process IDs to be killed: [699527] (in reverse order)
[2026-01-31 23:40:01] 2026-01-31 22:39:30,784 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 23:40:01] 2026-01-31 22:39:30,785 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 23:40:01] 2026-01-31 22:39:30,786 | INFO     | did not find any defunct processes belonging to 699527
[2026-01-31 23:40:01] 2026-01-31 22:39:30,788 | INFO     | did not find any defunct processes belonging to 699527
[2026-01-31 23:40:01] 2026-01-31 22:39:30,788 | INFO     | ready for new job
[2026-01-31 23:40:01] 2026-01-31 22:39:30,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 23:40:01] 2026-01-31 22:39:30,789 | INFO     | **************************************
[2026-01-31 23:40:01] 2026-01-31 22:39:30,789 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 23:40:01] 2026-01-31 22:39:30,789 | INFO     | **************************************
[2026-01-31 23:40:01] 2026-01-31 22:39:30,789 | INFO     | 
[2026-01-31 23:40:01] 2026-01-31 22:39:30,789 | INFO     | architecture information:
[2026-01-31 23:40:01] 2026-01-31 22:39:30,789 | INFO     | executing command: cat /etc/os-release
[2026-01-31 23:40:01] 2026-01-31 22:39:30,798 | INFO     | cat /etc/os-release:
[2026-01-31 23:40:01] NAME="CentOS Linux"
[2026-01-31 23:40:01] VERSION="7 (Core)"
[2026-01-31 23:40:01] ID="centos"
[2026-01-31 23:40:01] ID_LIKE="rhel fedora"
[2026-01-31 23:40:01] VERSION_ID="7"
[2026-01-31 23:40:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 23:40:01] ANSI_COLOR="0;31"
[2026-01-31 23:40:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 23:40:01] HOME_URL="https://www.centos.org/"
[2026-01-31 23:40:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 23:40:01] 
[2026-01-31 23:40:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 23:40:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 23:40:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 23:40:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 23:40:01] 
[2026-01-31 23:40:01] 2026-01-31 22:39:30,798 | INFO     | **************************************
[2026-01-31 23:40:01] 2026-01-31 22:39:31,300 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-31 23:40:01] 2026-01-31 22:39:31,312 | INFO     | sufficient remaining disk space (276676214784 B)
[2026-01-31 23:40:01] 2026-01-31 22:39:31,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 23:40:01] 2026-01-31 22:39:31,312 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 23:40:01] 2026-01-31 22:39:31,312 | INFO     | update_server=False
[2026-01-31 23:40:01] 2026-01-31 22:39:31,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 23:40:01] 2026-01-31 22:39:31,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 23:40:01] 2026-01-31 22:39:31,649 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 23:40:01] 2026-01-31 22:39:31,650 | INFO     | aborting loop
[2026-01-31 23:40:01] 2026-01-31 22:39:32,059 | INFO     | all data control threads have been joined
[2026-01-31 23:40:01] 2026-01-31 22:39:32,139 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 23:40:01] 2026-01-31 22:39:32,318 | INFO     | [job] queue monitor thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:32,318 | INFO     | [job] retrieve thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:32,411 | INFO     | [payload] failed_post thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:32,605 | INFO     | all payload control threads have been joined
[2026-01-31 23:40:01] 2026-01-31 22:39:32,655 | INFO     | [job] job monitor thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:32,663 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 23:40:01] 2026-01-31 22:39:32,765 | INFO     | all job control threads have been joined
[2026-01-31 23:40:01] 2026-01-31 22:39:32,930 | INFO     | [job] validate thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,037 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,044 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,065 | INFO     | [data] control thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,118 | INFO     | [data] copytool_in thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,309 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,611 | INFO     | [payload] control thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,736 | INFO     | [payload] validate_post thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:33,771 | INFO     | [job] control thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:34,145 | INFO     | [data] copytool_out thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:36,669 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:41,734 | INFO     | job.realtimelogging is not enabled
[2026-01-31 23:40:01] 2026-01-31 22:39:42,739 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 23:40:01] 2026-01-31 22:39:43,058 | INFO     | [monitor] cgroup control has ended
[2026-01-31 23:40:01] 2026-01-31 22:39:45,109 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140240639264576)>', '<ExcThread(monitor, started 140240357701376)>']
[2026-01-31 23:40:01] 2026-01-31 22:39:50,135 | INFO     | all workflow threads have been joined
[2026-01-31 23:40:01] 2026-01-31 22:39:50,135 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 23:40:01] 2026-01-31 22:39:50,135 | INFO     | traces error code: 0
[2026-01-31 23:40:01] 2026-01-31 22:39:50,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 23:40:01] 2026-01-31 22:40:00,875 | INFO     | PID=695108 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-31 23:40:01] 2026-01-31 22:40:00,876 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 23:40:01] 2026-01-31 22:40:00,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 23:40:01] 2026-01-31 22:40:00,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 23:40:01] 2026-01-31 22:40:00,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 23:40:01] 2026-01-31 22:40:00,876 | INFO     | [monitor] control thread has ended
[2026-01-31 23:40:01] 2026-01-31 22:40:00,927 [wrapper] ==== pilot stdout END ====
[2026-01-31 23:40:01] 2026-01-31 22:40:00,929 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 23:40:01] 2026-01-31 22:40:00,931 [wrapper] pilotpid: 695108
[2026-01-31 23:40:01] 2026-01-31 22:40:00,933 [wrapper] Pilot exit status: 0
[2026-01-31 23:40:01] 2026-01-31 22:40:00,941 [wrapper] pandaids: 6994405211
[2026-01-31 23:40:01] 2026-01-31 22:40:00,960 [wrapper] cleanup supervisor_pilot  705532 695109
[2026-01-31 23:40:01] 2026-01-31 22:40:00,962 [wrapper] Test setup, not cleaning
[2026-01-31 23:40:01] 2026-01-31 22:40:00,964 [wrapper] apfmon messages muted
[2026-01-31 23:40:01] 2026-01-31 22:40:00,967 [wrapper] ==== wrapper stdout END ====
[2026-01-31 23:40:01] 2026-01-31 22:40:00,969 [wrapper] ==== wrapper stderr END ====
[2026-01-31 23:40:01]  *** Error codes and diagnostics ***
[2026-01-31 23:40:01]     "exeErrorCode": 0,
[2026-01-31 23:40:01]     "exeErrorDiag": "",
[2026-01-31 23:40:01]     "pilotErrorCode": 0,
[2026-01-31 23:40:01]     "pilotErrorDiag": "",
[2026-01-31 23:40:01]  *** Listing of results directory ***
[2026-01-31 23:40:01] total 670456
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc    584422 Jan 31 05:35 pilot3.tar.gz
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc      5111 Jan 31 06:26 queuedata.json
[2026-01-31 23:40:01] -rwx------ 1 boinc boinc     36322 Jan 31 06:27 runpilot2-wrapper.sh
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc       100 Jan 31 22:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 23:40:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 22:25 run_atlas
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc       105 Jan 31 22:25 job.xml
[2026-01-31 23:40:01] -rw-r--r-- 2 boinc boinc 498598556 Jan 31 22:25 EVNT.48310585._000131.pool.root.1
[2026-01-31 23:40:01] -rw-r--r-- 2 boinc boinc    597763 Jan 31 22:25 input.tar.gz
[2026-01-31 23:40:01] -rw-r--r-- 2 boinc boinc     15845 Jan 31 22:25 start_atlas.sh
[2026-01-31 23:40:01] drwxrwx--x 2 boinc boinc      4096 Jan 31 22:25 shared
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc         0 Jan 31 22:25 boinc_setup_complete
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc      6447 Jan 31 22:25 init_data.xml
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc         0 Jan 31 22:25 boinc_lockfile
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc      2529 Jan 31 22:25 pandaJob.out
[2026-01-31 23:40:01] -rw------- 1 boinc boinc   1010528 Jan 31 22:25 agis_schedconf.cvmfs.json
[2026-01-31 23:40:01] -rw------- 1 boinc boinc   1511668 Jan 31 22:25 agis_ddmendpoints.agis.ALL.json
[2026-01-31 23:40:01] -rw------- 1 boinc boinc       428 Jan 31 22:25 workernode_map.json
[2026-01-31 23:40:01] drwx------ 5 boinc boinc      4096 Jan 31 22:25 pilot3
[2026-01-31 23:40:01] -rw------- 1 boinc boinc 182148029 Jan 31 23:39 HITS.48310589._006910.pool.root.1
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc       530 Jan 31 23:39 boinc_task_state.xml
[2026-01-31 23:40:01] -rw------- 1 boinc boinc      1019 Jan 31 23:39 memory_monitor_summary.json
[2026-01-31 23:40:01] -rw------- 1 boinc boinc    284653 Jan 31 23:39 log.48310589._006910.job.log.tgz.1
[2026-01-31 23:40:01] -rw------- 1 boinc boinc      6316 Jan 31 23:39 heartbeat.json
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc      8192 Jan 31 23:39 boinc_mmap_file
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc        27 Jan 31 23:39 wrapper_checkpoint.txt
[2026-01-31 23:40:01] -rw------- 1 boinc boinc       746 Jan 31 23:40 pilotlog.txt
[2026-01-31 23:40:01] -rw------- 1 boinc boinc        95 Jan 31 23:40 pilot_heartbeat.json
[2026-01-31 23:40:01] -rw------- 1 boinc boinc    654542 Jan 31 23:40 log.48310589._006910.job.log.1
[2026-01-31 23:40:01] -rw------- 1 boinc boinc       357 Jan 31 23:40 output.list
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc       620 Jan 31 23:40 runtime_log
[2026-01-31 23:40:01] -rw------- 1 boinc boinc    952320 Jan 31 23:40 result.tar.gz
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc      8916 Jan 31 23:40 runtime_log.err
[2026-01-31 23:40:01] -rw------- 1 boinc boinc       661 Jan 31 23:40 gxwNDmhhI68n9Rq4apOajLDm4fhM0noT9bVooX4SDm7mMKDmDuAxYm.diag
[2026-01-31 23:40:01] -rw-r--r-- 1 boinc boinc     11705 Jan 31 23:40 stderr.txt
[2026-01-31 23:40:01] HITS file was successfully produced:
[2026-01-31 23:40:01] -rw------- 1 boinc boinc 182148029 Jan 31 23:39 shared/HITS.pool.root.1
[2026-01-31 23:40:01]  *** Contents of shared directory: ***
[2026-01-31 23:40:01] total 666336
[2026-01-31 23:40:01] -rw-r--r-- 2 boinc boinc 498598556 Jan 31 22:25 ATLAS.root_0
[2026-01-31 23:40:01] -rw-r--r-- 2 boinc boinc    597763 Jan 31 22:25 input.tar.gz
[2026-01-31 23:40:01] -rw-r--r-- 2 boinc boinc     15845 Jan 31 22:25 start_atlas.sh
[2026-01-31 23:40:01] -rw------- 1 boinc boinc 182148029 Jan 31 23:39 HITS.pool.root.1
[2026-01-31 23:40:01] -rw------- 1 boinc boinc    952320 Jan 31 23:40 result.tar.gz
23:40:02 (691067): run_atlas exited; CPU time 12636.409959
23:40:02 (691067): called boinc_finish(0)

</stderr_txt>
]]>

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