Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-31 10:56:20 (56267): vboxwrapper version 26210
2026-01-31 10:56:20 (56267): BOINC client version: 8.2.8
2026-01-31 10:56:20 (56267): Detected: VirtualBox VboxManage Interface (Version: 7.2.6)
2026-01-31 10:56:20 (56267): Successfully copied 'init_data.xml' to the shared directory.
2026-01-31 10:56:20 (56267): Create VM. (boinc_a0c29622f6e3c7de, slot#6)
2026-01-31 10:56:20 (56267): Setting Memory Size for VM. (4100MB)
2026-01-31 10:56:20 (56267): Setting CPU Count for VM. (1)
2026-01-31 10:56:20 (56267): Setting Chipset Options for VM.
2026-01-31 10:56:20 (56267): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-31 10:56:20 (56267): Setting Boot Options for VM.
2026-01-31 10:56:20 (56267): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-31 10:56:20 (56267): Enabling VM Network Access.
2026-01-31 10:56:20 (56267): Disabling USB Support for VM.
2026-01-31 10:56:20 (56267): Disabling COM Port Support for VM.
2026-01-31 10:56:20 (56267): Disabling LPT Port Support for VM.
2026-01-31 10:56:20 (56267): Disabling Audio Support for VM.
2026-01-31 10:56:20 (56267): Disabling Clipboard Support for VM.
2026-01-31 10:56:20 (56267): Disabling Drag and Drop Support for VM.
2026-01-31 10:56:21 (56267): Adding storage controller(s) to VM.
2026-01-31 10:56:21 (56267): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-31 10:56:21 (56267): Adding VirtualBox Guest Additions to VM.
2026-01-31 10:56:21 (56267): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-31 10:56:21 (56267): forwarding host port 34313 to guest port 80
2026-01-31 10:56:21 (56267): Enabling remote desktop for VM.
2026-01-31 10:56:21 (56267): Required extension pack not installed, remote desktop not enabled.
2026-01-31 10:56:21 (56267): Enabling shared directory for VM.
2026-01-31 10:56:21 (56267): Starting VM using VBoxManage interface. (boinc_a0c29622f6e3c7de, slot#6)
2026-01-31 10:56:22 (56267): Successfully started VM. (PID = '56880')
2026-01-31 10:56:22 (56267): Reporting VM Process ID to BOINC.
2026-01-31 10:56:22 (56267): Guest Log: BIOS: VirtualBox 7.2.6
2026-01-31 10:56:22 (56267): Guest Log: CPUID EDX: 0x178bfbff
2026-01-31 10:56:22 (56267): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-31 10:56:22 (56267): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-31 10:56:22 (56267): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-31 10:56:22 (56267): Detected: Web Application Enabled (http://localhost:34313)
2026-01-31 10:56:22 (56267): Preference change detected
2026-01-31 10:56:22 (56267): Setting CPU throttle for VM. (100%)
2026-01-31 10:56:22 (56267): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-31 10:56:24 (56267): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-31 10:56:24 (56267): Guest Log: BIOS: Booting from Hard Disk...
2026-01-31 10:56:27 (56267): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-31 10:56:27 (56267): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-31 10:56:27 (56267): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-31 10:56:31 (56267): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-31 10:56:31 (56267): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-31 10:56:41 (56267): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000167 main     Log opened 2026-01-31T10:56:39.509902000Z
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000276 main     OS Product: Linux
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000323 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000346 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000366 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000367 main     Process ID: 1247
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.000367 main     Package type: LINUX_64BITS_GENERIC
2026-01-31 10:56:41 (56267): Guest Log: 00:00:00.001594 main     5.2.32 r132073 started. Verbose level = 0
2026-01-31 10:56:41 (56267): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-31 10:56:41 (56267): Guest Log: [INFO] Mounting shared directory
2026-01-31 10:56:41 (56267): Guest Log: [INFO] Checking for init_data.xml
2026-01-31 10:57:26 (56267): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-31 10:57:26 (56267): Guest Log: [INFO] Detected branch: prod
2026-01-31 10:57:44 (56267): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-31 10:57:44 (56267): Guest Log: Copying input files
2026-01-31 10:57:48 (56267): Guest Log: Copied input files into RunAtlas.
2026-01-31 10:57:48 (56267): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-31 10:57:48 (56267): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-31 10:57:48 (56267): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-31 10:57:48 (56267): Guest Log: Further information can be found at the LHC@home message board.
2026-01-31 10:58:38 (56267): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-31 10:58:39 (56267): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-31 10:58:39 (56267): Guest Log: 2.6.3.0 1539 1 32120 155710 3 1 3117739 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-31 10:58:47 (56267): Guest Log: copied the webapp to /var/www
2026-01-31 10:58:47 (56267): Guest Log: core_number=1
2026-01-31 10:58:47 (56267): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-31 10:58:47 (56267): Guest Log:  *** Starting ATLAS job. (PandaID=6994407121 taskID=48431080) ***
2026-01-31 12:35:24 (56267): Status Report: Elapsed Time: '6000.786072'
2026-01-31 12:35:24 (56267): Status Report: CPU Time: '5597.070000'
2026-01-31 13:26:27 (56267): Preference change detected
2026-01-31 13:26:27 (56267): Setting CPU throttle for VM. (100%)
2026-01-31 13:26:27 (56267): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-31 14:14:24 (56267): Status Report: Elapsed Time: '12000.891747'
2026-01-31 14:14:24 (56267): Status Report: CPU Time: '11543.810000'
2026-01-31 15:53:25 (56267): Status Report: Elapsed Time: '18001.354191'
2026-01-31 15:53:25 (56267): Status Report: CPU Time: '17482.220000'
2026-01-31 17:32:26 (56267): Status Report: Elapsed Time: '24001.577304'
2026-01-31 17:32:26 (56267): Status Report: CPU Time: '23422.870000'
2026-01-31 19:11:27 (56267): Status Report: Elapsed Time: '30002.202702'
2026-01-31 19:11:27 (56267): Status Report: CPU Time: '29369.850000'
2026-01-31 19:28:13 (56267): Guest Log:  *** Job finished ***
2026-01-31 19:28:13 (56267): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:24:37,798 | INFO     | [data] queue_monitor thread has finished
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:13,912 | INFO     | [monitor] cgroup control has ended
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:15,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182935299904)>', '<ExcThread(monitor, started 140182355437312)>']
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:16,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:16,347 | INFO     | [monitor] control thread has ended
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:20,994 | INFO     | all workflow threads have been joined
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:20,995 | INFO     | end of generic workflow (traces error code: 0)
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:20,995 | INFO     | traces error code: 0
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:20,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:21,090 [wrapper] ==== pilot stdout END ====
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:21,094 [wrapper] ==== wrapper stdout RESUME ====
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:21,097 [wrapper] pilotpid: 5897
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:25:21,100 [wrapper] Pilot exit status: 0
2026-01-31 19:28:13 (56267): Guest Log: ./runpilot2-wrapper.sh: line 1019: /usr/bin/xargs: Input/output error
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:28:13,676 [wrapper] pandaids: 
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:28:13,703 [wrapper] cleanup supervisor_pilot 32660 5898
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:28:13,707 [wrapper] Test setup, not cleaning
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:28:13,711 [wrapper] apfmon messages muted
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:28:13,714 [wrapper] ==== wrapper stdout END ====
2026-01-31 19:28:13 (56267): Guest Log: 2026-01-31 19:28:13,717 [wrapper] ==== wrapper stderr END ====
2026-01-31 19:28:13 (56267): Guest Log:  *** Error codes and diagnostics ***
2026-01-31 19:28:13 (56267): Guest Log:     "exeErrorCode": 0,
2026-01-31 19:28:13 (56267): Guest Log:     "exeErrorDiag": "",
2026-01-31 19:28:13 (56267): Guest Log:     "pilotErrorCode": 0,
2026-01-31 19:28:13 (56267): Guest Log:     "pilotErrorDiag": "",
2026-01-31 19:28:13 (56267): Guest Log:  *** Listing of results directory ***
2026-01-31 19:28:13 (56267): Guest Log: total 260524
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas    584422 Jan 31 04:27 pilot3.tar.gz
2026-01-31 19:28:13 (56267): Guest Log: -rwx------. 1 atlas atlas     36322 Jan 31 04:29 runpilot2-wrapper.sh
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jan 31 04:30 queuedata.json
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas     15845 Jan 31 10:57 start_atlas.sh
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas      9222 Jan 31 10:57 init_data.xml
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas    597766 Jan 31 10:57 input.tar.gz
2026-01-31 19:28:13 (56267): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 31 10:57 EVNT.48431078._000065.pool.root.1 -> /data/./ATLAS.root_0
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Jan 31 10:58 pandaJob.out
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas   1010520 Jan 31 10:59 agis_schedconf.cvmfs.json
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas       428 Jan 31 10:59 workernode_map.json
2026-01-31 19:28:13 (56267): Guest Log: drwx------. 5 atlas atlas      4096 Jan 31 11:00 pilot3
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas        95 Jan 31 19:23 pilot_heartbeat.json
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas 253255459 Jan 31 19:23 HITS.48431080._003321.pool.root.1
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas      1027 Jan 31 19:24 memory_monitor_summary.json
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas   1511668 Jan 31 19:24 agis_ddmendpoints.agis.ALL.json
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas    618056 Jan 31 19:24 log.48431080._003321.job.log.tgz.1
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas      6375 Jan 31 19:24 heartbeat.json
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas      4608 Jan 31 19:25 pilotlog.txt
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas   4207533 Jan 31 19:28 log.48431080._003321.job.log.1
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas       357 Jan 31 19:28 output.list
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas      8637 Jan 31 19:28 runtime_log.err
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 31 19:28 runtime_log
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas   4843520 Jan 31 19:28 result.tar.gz
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas       659 Jan 31 19:28 iRGNDmLnH68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmA1MKDmyxZcKn.diag
2026-01-31 19:28:13 (56267): Guest Log: Looking for outputfile HITS.48431080._003321.pool.root.1
2026-01-31 19:28:13 (56267): Guest Log: HITS file was successfully produced
2026-01-31 19:28:13 (56267): Guest Log: -rw-------. 1 atlas atlas 253255459 Jan 31 19:23 /home/atlas/RunAtlas/HITS.48431080._003321.pool.root.1
2026-01-31 19:28:13 (56267): Guest Log: Successfully finished the ATLAS job!
2026-01-31 19:28:13 (56267): Guest Log: Copying the results back to the shared directory!
2026-01-31 19:28:13 (56267): Guest Log:  *** Contents of shared directory: ***
2026-01-31 19:28:13 (56267): Guest Log: total 640588
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 root root 650482957 Jan 31 10:56 ATLAS.root_0
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 root root      9222 Jan 31 10:56 init_data.xml
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 root root    597766 Jan 31 10:56 input.tar.gz
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 root root   4843520 Jan 31 19:28 result.tar.gz
2026-01-31 19:28:13 (56267): Guest Log: -rw-r--r--. 1 root root     15845 Jan 31 10:56 start_atlas.sh
2026-01-31 19:28:13 (56267): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-31 19:28:13 (56267): VM Completion File Detected.
2026-01-31 19:28:13 (56267): Powering off VM.
2026-01-31 19:28:14 (56267): Successfully stopped VM.
2026-01-31 19:28:14 (56267): Deregistering VM. (boinc_a0c29622f6e3c7de, slot#6)
2026-01-31 19:28:14 (56267): Removing network bandwidth throttle group from VM.
2026-01-31 19:28:14 (56267): Removing VM from VirtualBox.
2026-01-31 19:28:19 (56267): called boinc_finish(0)

</stderr_txt>
]]>

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