Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:31:22 (2077888): wrapper (7.7.26015): starting
16:31:22 (2077888): wrapper: running run_atlas (--nthreads 3)
[2026-01-31 16:31:22] Arguments: --nthreads 3
[2026-01-31 16:31:22] Threads: 3
[2026-01-31 16:31:22] Checking for CVMFS
[2026-01-31 16:31:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 16:31:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 16:31:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 16:31:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 16:31:23] 2.9.2.0 1381994 4309 84760 155718 3 50 25769791 36864001 0 130560 0 1999327 99.987 133485 16422 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-31 16:31:23] CVMFS is ok
[2026-01-31 16:31:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 16:31:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 16:31:23] Further information can be found at the LHC@home message board.
[2026-01-31 16:31:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 16:31:23] Checking for apptainer binary...
[2026-01-31 16:31:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 16:31:23] Running /usr/bin/apptainer --version
[2026-01-31 16:31:23] apptainer version 1.4.1-1.1
[2026-01-31 16:31:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 16:31:23] magicA161a
[2026-01-31 16:31:23] apptainer works
[2026-01-31 16:31:23] Set ATHENA_PROC_NUMBER=3
[2026-01-31 16:31:23] Set ATHENA_CORE_NUMBER=3
[2026-01-31 16:31:23] Starting ATLAS job with PandaID=6990473630
[2026-01-31 16:31:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 17:44:45]  *** The last 200 lines of the pilot log: ***
[2026-01-31 17:44:45] 2026-01-31 16:44:24,559 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 17:44:45] 2026-01-31 16:44:24,559 | INFO     | job 6990473630 has completed (purged errors)
[2026-01-31 17:44:45] 2026-01-31 16:44:24,559 | INFO     | overall cleanup function is called
[2026-01-31 17:44:45] 2026-01-31 16:44:25,565 | INFO     | --- collectZombieJob: --- 10, [2086344]
[2026-01-31 17:44:45] 2026-01-31 16:44:25,566 | INFO     | zombie collector waiting for pid 2086344
[2026-01-31 17:44:45] 2026-01-31 16:44:25,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 17:44:45] 2026-01-31 16:44:25,566 | INFO     | collected zombie processes
[2026-01-31 17:44:45] 2026-01-31 16:44:25,566 | INFO     | will attempt to kill all subprocesses of pid=2086344
[2026-01-31 17:44:45] 2026-01-31 16:44:25,607 | INFO     | process IDs to be killed: [2086344] (in reverse order)
[2026-01-31 17:44:45] 2026-01-31 16:44:25,631 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 17:44:45] 2026-01-31 16:44:25,631 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 17:44:45] 2026-01-31 16:44:25,633 | INFO     | did not find any defunct processes belonging to 2086344
[2026-01-31 17:44:45] 2026-01-31 16:44:25,634 | INFO     | did not find any defunct processes belonging to 2086344
[2026-01-31 17:44:45] 2026-01-31 16:44:25,634 | INFO     | ready for new job
[2026-01-31 17:44:45] 2026-01-31 16:44:25,634 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 17:44:45] 2026-01-31 16:44:25,635 | INFO     | **************************************
[2026-01-31 17:44:45] 2026-01-31 16:44:25,635 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 17:44:45] 2026-01-31 16:44:25,635 | INFO     | **************************************
[2026-01-31 17:44:45] 2026-01-31 16:44:25,635 | INFO     | 
[2026-01-31 17:44:45] 2026-01-31 16:44:25,635 | INFO     | architecture information:
[2026-01-31 17:44:45] 2026-01-31 16:44:25,635 | INFO     | executing command: cat /etc/os-release
[2026-01-31 17:44:45] 2026-01-31 16:44:25,643 | INFO     | cat /etc/os-release:
[2026-01-31 17:44:45] NAME="CentOS Linux"
[2026-01-31 17:44:45] VERSION="7 (Core)"
[2026-01-31 17:44:45] ID="centos"
[2026-01-31 17:44:45] ID_LIKE="rhel fedora"
[2026-01-31 17:44:45] VERSION_ID="7"
[2026-01-31 17:44:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 17:44:45] ANSI_COLOR="0;31"
[2026-01-31 17:44:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 17:44:45] HOME_URL="https://www.centos.org/"
[2026-01-31 17:44:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 17:44:45] 
[2026-01-31 17:44:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 17:44:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 17:44:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 17:44:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 17:44:45] 
[2026-01-31 17:44:45] 2026-01-31 16:44:25,644 | INFO     | **************************************
[2026-01-31 17:44:45] 2026-01-31 16:44:26,147 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-31 17:44:45] 2026-01-31 16:44:26,159 | INFO     | sufficient remaining disk space (375887233024 B)
[2026-01-31 17:44:45] 2026-01-31 16:44:26,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 17:44:45] 2026-01-31 16:44:26,159 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 17:44:45] 2026-01-31 16:44:26,159 | INFO     | update_server=False
[2026-01-31 17:44:45] 2026-01-31 16:44:26,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 17:44:45] 2026-01-31 16:44:26,160 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:44:45] 2026-01-31 16:44:26,160 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-31 17:44:45] 2026-01-31 16:44:26,160 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 17:44:45] 2026-01-31 16:44:26,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 17:44:45] 2026-01-31 16:44:26,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 17:44:45] 2026-01-31 16:44:26,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:44:45] 2026-01-31 16:44:26,203 | INFO     | aborting loop
[2026-01-31 17:44:45] 2026-01-31 16:44:26,496 | INFO     | all job control threads have been joined
[2026-01-31 17:44:45] 2026-01-31 16:44:26,499 | INFO     | all data control threads have been joined
[2026-01-31 17:44:45] 2026-01-31 16:44:26,708 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 17:44:45] 2026-01-31 16:44:27,164 | INFO     | [job] retrieve thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,165 | INFO     | [job] queue monitor thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,209 | INFO     | [job] job monitor thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,267 | INFO     | [payload] validate_post thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,501 | INFO     | [job] control thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,505 | INFO     | [data] control thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,546 | INFO     | all payload control threads have been joined
[2026-01-31 17:44:45] 2026-01-31 16:44:27,844 | INFO     | [job] validate thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:27,916 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:28,009 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:28,072 | INFO     | [data] copytool_in thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:28,078 | INFO     | [payload] failed_post thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:28,343 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:28,552 | INFO     | [payload] control thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:28,566 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 17:44:45] 2026-01-31 16:44:28,714 | INFO     | [data] copytool_out thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:32,573 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:36,689 | INFO     | job.realtimelogging is not enabled
[2026-01-31 17:44:45] 2026-01-31 16:44:37,694 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 17:44:45] 2026-01-31 16:44:38,230 | INFO     | [monitor] cgroup control has ended
[2026-01-31 17:44:45] 2026-01-31 16:44:39,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518139410240)>', '<ExcThread(monitor, started 140517857048320)>']
[2026-01-31 17:44:45] 2026-01-31 16:44:40,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 17:44:45] 2026-01-31 16:44:40,233 | INFO     | [monitor] control thread has ended
[2026-01-31 17:44:45] 2026-01-31 16:44:44,922 | INFO     | all workflow threads have been joined
[2026-01-31 17:44:45] 2026-01-31 16:44:44,923 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 17:44:45] 2026-01-31 16:44:44,923 | INFO     | traces error code: 0
[2026-01-31 17:44:45] 2026-01-31 16:44:44,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 17:44:45] 2026-01-31 16:44:44,973 [wrapper] ==== pilot stdout END ====
[2026-01-31 17:44:45] 2026-01-31 16:44:44,975 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 17:44:45] 2026-01-31 16:44:44,978 [wrapper] pilotpid: 2081927
[2026-01-31 17:44:45] 2026-01-31 16:44:44,980 [wrapper] Pilot exit status: 0
[2026-01-31 17:44:45] 2026-01-31 16:44:44,987 [wrapper] pandaids: 6990473630
[2026-01-31 17:44:45] 2026-01-31 16:44:45,002 [wrapper] cleanup supervisor_pilot 2091259 2081928
[2026-01-31 17:44:45] 2026-01-31 16:44:45,005 [wrapper] Test setup, not cleaning
[2026-01-31 17:44:45] 2026-01-31 16:44:45,007 [wrapper] apfmon messages muted
[2026-01-31 17:44:45] 2026-01-31 16:44:45,010 [wrapper] ==== wrapper stdout END ====
[2026-01-31 17:44:45] 2026-01-31 16:44:45,012 [wrapper] ==== wrapper stderr END ====
[2026-01-31 17:44:45]  *** Error codes and diagnostics ***
[2026-01-31 17:44:45]     "exeErrorCode": 0,
[2026-01-31 17:44:45]     "exeErrorDiag": "",
[2026-01-31 17:44:45]     "pilotErrorCode": 0,
[2026-01-31 17:44:45]     "pilotErrorDiag": "",
[2026-01-31 17:44:45]  *** Listing of results directory ***
[2026-01-31 17:44:45] total 663956
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc    584422 Jan 31 02:06 pilot3.tar.gz
[2026-01-31 17:44:45] -rwx------ 1 boinc boinc     36322 Jan 31 02:07 runpilot2-wrapper.sh
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc      5111 Jan 31 02:08 queuedata.json
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc       100 Jan 31 16:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 17:44:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 16:31 run_atlas
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc       105 Jan 31 16:31 job.xml
[2026-01-31 17:44:45] -rw-r--r-- 2 boinc boinc 496723875 Jan 31 16:31 EVNT.48310721._000199.pool.root.1
[2026-01-31 17:44:45] -rw-r--r-- 2 boinc boinc    597762 Jan 31 16:31 input.tar.gz
[2026-01-31 17:44:45] -rw-r--r-- 2 boinc boinc     15845 Jan 31 16:31 start_atlas.sh
[2026-01-31 17:44:45] drwxrwx--x 2 boinc boinc      4096 Jan 31 16:31 shared
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc         0 Jan 31 16:31 boinc_setup_complete
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc      6448 Jan 31 16:31 init_data.xml
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc         0 Jan 31 16:31 boinc_lockfile
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc      2535 Jan 31 16:31 pandaJob.out
[2026-01-31 17:44:45] -rw------- 1 boinc boinc   1010528 Jan 31 16:31 agis_schedconf.cvmfs.json
[2026-01-31 17:44:45] -rw------- 1 boinc boinc   1511668 Jan 31 16:31 agis_ddmendpoints.agis.ALL.json
[2026-01-31 17:44:45] -rw------- 1 boinc boinc       427 Jan 31 16:31 workernode_map.json
[2026-01-31 17:44:45] drwx------ 5 boinc boinc      4096 Jan 31 16:31 pilot3
[2026-01-31 17:44:45] -rw------- 1 boinc boinc        95 Jan 31 17:43 pilot_heartbeat.json
[2026-01-31 17:44:45] -rw------- 1 boinc boinc 177450624 Jan 31 17:44 HITS.48310724._011058.pool.root.1
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc       530 Jan 31 17:44 boinc_task_state.xml
[2026-01-31 17:44:45] -rw------- 1 boinc boinc      1017 Jan 31 17:44 memory_monitor_summary.json
[2026-01-31 17:44:45] -rw------- 1 boinc boinc    245908 Jan 31 17:44 log.48310724._011058.job.log.tgz.1
[2026-01-31 17:44:45] -rw------- 1 boinc boinc      6307 Jan 31 17:44 heartbeat.json
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc      8192 Jan 31 17:44 boinc_mmap_file
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc        27 Jan 31 17:44 wrapper_checkpoint.txt
[2026-01-31 17:44:45] -rw------- 1 boinc boinc      4624 Jan 31 17:44 pilotlog.txt
[2026-01-31 17:44:45] -rw------- 1 boinc boinc    646677 Jan 31 17:44 log.48310724._011058.job.log.1
[2026-01-31 17:44:45] -rw------- 1 boinc boinc       357 Jan 31 17:44 output.list
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc       620 Jan 31 17:44 runtime_log
[2026-01-31 17:44:45] -rw------- 1 boinc boinc    911360 Jan 31 17:44 result.tar.gz
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc      8916 Jan 31 17:44 runtime_log.err
[2026-01-31 17:44:45] -rw------- 1 boinc boinc       661 Jan 31 17:44 WWfLDmKdE68n9Rq4apOajLDm4fhM0noT9bVooX4SDm4HMKDm4abODn.diag
[2026-01-31 17:44:45] -rw-r--r-- 1 boinc boinc     10925 Jan 31 17:44 stderr.txt
[2026-01-31 17:44:45] HITS file was successfully produced:
[2026-01-31 17:44:45] -rw------- 1 boinc boinc 177450624 Jan 31 17:44 shared/HITS.pool.root.1
[2026-01-31 17:44:45]  *** Contents of shared directory: ***
[2026-01-31 17:44:45] total 659876
[2026-01-31 17:44:45] -rw-r--r-- 2 boinc boinc 496723875 Jan 31 16:31 ATLAS.root_0
[2026-01-31 17:44:45] -rw-r--r-- 2 boinc boinc    597762 Jan 31 16:31 input.tar.gz
[2026-01-31 17:44:45] -rw-r--r-- 2 boinc boinc     15845 Jan 31 16:31 start_atlas.sh
[2026-01-31 17:44:45] -rw------- 1 boinc boinc 177450624 Jan 31 17:44 HITS.pool.root.1
[2026-01-31 17:44:45] -rw------- 1 boinc boinc    911360 Jan 31 17:44 result.tar.gz
17:44:46 (2077888): run_atlas exited; CPU time 12463.964171
17:44:46 (2077888): called boinc_finish(0)

</stderr_txt>
]]>

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