Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:38:25 (659426): wrapper (7.7.26015): starting
18:38:25 (659426): wrapper: running run_atlas (--nthreads 3)
[2026-01-31 18:38:25] Arguments: --nthreads 3
[2026-01-31 18:38:25] Threads: 3
[2026-01-31 18:38:25] Checking for CVMFS
[2026-01-31 18:38:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 18:38:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 18:38:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 18:38:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 18:38:25] 2.9.2.0 4027610 4640 83064 155722 0 50 24913031 36864001 0 130560 0 2158888 99.987 139035 11372 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-31 18:38:25] CVMFS is ok
[2026-01-31 18:38:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 18:38:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 18:38:25] Further information can be found at the LHC@home message board.
[2026-01-31 18:38:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 18:38:25] Checking for apptainer binary...
[2026-01-31 18:38:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 18:38:25] Running /usr/bin/apptainer --version
[2026-01-31 18:38:25] apptainer version 1.4.1-1.1
[2026-01-31 18:38:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 18:38:25] magicA246a
[2026-01-31 18:38:25] apptainer works
[2026-01-31 18:38:25] Set ATHENA_PROC_NUMBER=3
[2026-01-31 18:38:25] Set ATHENA_CORE_NUMBER=3
[2026-01-31 18:38:25] Starting ATLAS job with PandaID=6994405914
[2026-01-31 18:38:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 20:28:54]  *** The last 200 lines of the pilot log: ***
[2026-01-31 20:28:54] 2026-01-31 19:28:22,271 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 20:28:54] 2026-01-31 19:28:22,271 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 20:28:54] 2026-01-31 19:28:22,271 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 20:28:54] 2026-01-31 19:28:22,271 | INFO     | job 6994405914 has completed (purged errors)
[2026-01-31 20:28:54] 2026-01-31 19:28:22,271 | INFO     | overall cleanup function is called
[2026-01-31 20:28:54] 2026-01-31 19:28:22,317 | INFO     | number of running child processes to parent process 667887: 1
[2026-01-31 20:28:54] 2026-01-31 19:28:22,317 | INFO     | maximum number of monitored processes: 6
[2026-01-31 20:28:54] 2026-01-31 19:28:22,317 | INFO     | aborting job monitoring since job object (job id=6994405914) has expired
[2026-01-31 20:28:54] 2026-01-31 19:28:23,278 | INFO     | --- collectZombieJob: --- 10, [667887]
[2026-01-31 20:28:54] 2026-01-31 19:28:23,279 | INFO     | zombie collector waiting for pid 667887
[2026-01-31 20:28:54] 2026-01-31 19:28:23,279 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 20:28:54] 2026-01-31 19:28:23,279 | INFO     | collected zombie processes
[2026-01-31 20:28:54] 2026-01-31 19:28:23,279 | INFO     | will attempt to kill all subprocesses of pid=667887
[2026-01-31 20:28:54] 2026-01-31 19:28:23,337 | INFO     | process IDs to be killed: [667887] (in reverse order)
[2026-01-31 20:28:54] 2026-01-31 19:28:23,365 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 20:28:54] 2026-01-31 19:28:23,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 20:28:54] 2026-01-31 19:28:23,367 | INFO     | did not find any defunct processes belonging to 667887
[2026-01-31 20:28:54] 2026-01-31 19:28:23,368 | INFO     | did not find any defunct processes belonging to 667887
[2026-01-31 20:28:54] 2026-01-31 19:28:23,368 | INFO     | ready for new job
[2026-01-31 20:28:54] 2026-01-31 19:28:23,369 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 20:28:54] 2026-01-31 19:28:23,369 | INFO     | **************************************
[2026-01-31 20:28:54] 2026-01-31 19:28:23,369 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 20:28:54] 2026-01-31 19:28:23,369 | INFO     | **************************************
[2026-01-31 20:28:54] 2026-01-31 19:28:23,369 | INFO     | 
[2026-01-31 20:28:54] 2026-01-31 19:28:23,370 | INFO     | architecture information:
[2026-01-31 20:28:54] 2026-01-31 19:28:23,370 | INFO     | executing command: cat /etc/os-release
[2026-01-31 20:28:54] 2026-01-31 19:28:23,379 | INFO     | cat /etc/os-release:
[2026-01-31 20:28:54] NAME="CentOS Linux"
[2026-01-31 20:28:54] VERSION="7 (Core)"
[2026-01-31 20:28:54] ID="centos"
[2026-01-31 20:28:54] ID_LIKE="rhel fedora"
[2026-01-31 20:28:54] VERSION_ID="7"
[2026-01-31 20:28:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 20:28:54] ANSI_COLOR="0;31"
[2026-01-31 20:28:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 20:28:54] HOME_URL="https://www.centos.org/"
[2026-01-31 20:28:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 20:28:54] 
[2026-01-31 20:28:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 20:28:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 20:28:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 20:28:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 20:28:54] 
[2026-01-31 20:28:54] 2026-01-31 19:28:23,379 | INFO     | **************************************
[2026-01-31 20:28:54] 2026-01-31 19:28:23,882 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-31 20:28:54] 2026-01-31 19:28:23,895 | INFO     | sufficient remaining disk space (276168704000 B)
[2026-01-31 20:28:54] 2026-01-31 19:28:23,895 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 20:28:54] 2026-01-31 19:28:23,895 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 20:28:54] 2026-01-31 19:28:23,895 | INFO     | update_server=False
[2026-01-31 20:28:54] 2026-01-31 19:28:23,895 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 20:28:54] 2026-01-31 19:28:23,896 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 20:28:54] 2026-01-31 19:28:23,896 | INFO     | aborting loop
[2026-01-31 20:28:54] 2026-01-31 19:28:23,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 20:28:54] 2026-01-31 19:28:24,218 | INFO     | all payload control threads have been joined
[2026-01-31 20:28:54] 2026-01-31 19:28:24,747 | INFO     | all data control threads have been joined
[2026-01-31 20:28:54] 2026-01-31 19:28:24,901 | INFO     | [job] retrieve thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:24,901 | INFO     | [job] job monitor thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:24,998 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:25,007 | INFO     | [data] copytool_in thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:25,139 | INFO     | [payload] validate_post thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:25,219 | INFO     | [payload] control thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:25,439 | INFO     | all job control threads have been joined
[2026-01-31 20:28:54] 2026-01-31 19:28:25,743 | INFO     | [payload] failed_post thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:25,753 | INFO     | [data] control thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:25,979 | INFO     | [data] copytool_out thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:26,315 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:26,356 | INFO     | [job] validate thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:26,377 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:26,444 | INFO     | [job] control thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:26,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 20:28:54] 2026-01-31 19:28:27,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 20:28:54] 2026-01-31 19:28:27,863 | INFO     | [job] queue monitor thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:31,009 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:34,639 | INFO     | job.realtimelogging is not enabled
[2026-01-31 20:28:54] 2026-01-31 19:28:35,644 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 20:28:54] 2026-01-31 19:28:41,596 | INFO     | [monitor] cgroup control has ended
[2026-01-31 20:28:54] 2026-01-31 19:28:42,841 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140099356956480)>', '<ExcThread(monitor, started 140098872010496)>']
[2026-01-31 20:28:54] 2026-01-31 19:28:47,867 | INFO     | all workflow threads have been joined
[2026-01-31 20:28:54] 2026-01-31 19:28:47,867 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 20:28:54] 2026-01-31 19:28:47,867 | INFO     | traces error code: 0
[2026-01-31 20:28:54] 2026-01-31 19:28:47,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 20:28:54] 2026-01-31 19:28:54,719 | INFO     | PID=663468 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-31 20:28:54] 2026-01-31 19:28:54,719 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 20:28:54] 2026-01-31 19:28:54,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 20:28:54] 2026-01-31 19:28:54,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 20:28:54] 2026-01-31 19:28:54,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 20:28:54] 2026-01-31 19:28:54,719 | INFO     | [monitor] control thread has ended
[2026-01-31 20:28:54] 2026-01-31 19:28:54,775 [wrapper] ==== pilot stdout END ====
[2026-01-31 20:28:54] 2026-01-31 19:28:54,777 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 20:28:54] 2026-01-31 19:28:54,779 [wrapper] pilotpid: 663468
[2026-01-31 20:28:54] 2026-01-31 19:28:54,782 [wrapper] Pilot exit status: 0
[2026-01-31 20:28:54] 2026-01-31 19:28:54,789 [wrapper] pandaids: 6994405914
[2026-01-31 20:28:54] 2026-01-31 19:28:54,808 [wrapper] cleanup supervisor_pilot  674822 663469
[2026-01-31 20:28:54] 2026-01-31 19:28:54,810 [wrapper] Test setup, not cleaning
[2026-01-31 20:28:54] 2026-01-31 19:28:54,812 [wrapper] apfmon messages muted
[2026-01-31 20:28:54] 2026-01-31 19:28:54,815 [wrapper] ==== wrapper stdout END ====
[2026-01-31 20:28:54] 2026-01-31 19:28:54,817 [wrapper] ==== wrapper stderr END ====
[2026-01-31 20:28:54]  *** Error codes and diagnostics ***
[2026-01-31 20:28:54]     "exeErrorCode": 0,
[2026-01-31 20:28:54]     "exeErrorDiag": "",
[2026-01-31 20:28:54]     "pilotErrorCode": 0,
[2026-01-31 20:28:54]     "pilotErrorDiag": "",
[2026-01-31 20:28:54]  *** Listing of results directory ***
[2026-01-31 20:28:54] total 889380
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc    584422 Jan 31 05:27 pilot3.tar.gz
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc      5111 Jan 31 05:28 queuedata.json
[2026-01-31 20:28:54] -rwx------ 1 boinc boinc     36322 Jan 31 05:29 runpilot2-wrapper.sh
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc       100 Jan 31 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 20:28:54] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 18:38 run_atlas
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc       105 Jan 31 18:38 job.xml
[2026-01-31 20:28:54] -rw-r--r-- 2 boinc boinc 647621645 Jan 31 18:38 EVNT.48431078._000055.pool.root.1
[2026-01-31 20:28:54] -rw-r--r-- 2 boinc boinc    597768 Jan 31 18:38 input.tar.gz
[2026-01-31 20:28:54] -rw-r--r-- 2 boinc boinc     15845 Jan 31 18:38 start_atlas.sh
[2026-01-31 20:28:54] drwxrwx--x 2 boinc boinc      4096 Jan 31 18:38 shared
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc         0 Jan 31 18:38 boinc_setup_complete
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc      6447 Jan 31 18:38 init_data.xml
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc         0 Jan 31 18:38 boinc_lockfile
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc      2557 Jan 31 18:38 pandaJob.out
[2026-01-31 20:28:54] -rw------- 1 boinc boinc   1010528 Jan 31 18:38 agis_schedconf.cvmfs.json
[2026-01-31 20:28:54] -rw------- 1 boinc boinc   1511668 Jan 31 18:38 agis_ddmendpoints.agis.ALL.json
[2026-01-31 20:28:54] -rw------- 1 boinc boinc       428 Jan 31 18:38 workernode_map.json
[2026-01-31 20:28:54] drwx------ 5 boinc boinc      4096 Jan 31 18:38 pilot3
[2026-01-31 20:28:54] -rw------- 1 boinc boinc 256698127 Jan 31 20:27 HITS.48431080._002796.pool.root.1
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc       530 Jan 31 20:28 boinc_task_state.xml
[2026-01-31 20:28:54] -rw------- 1 boinc boinc        95 Jan 31 20:28 pilot_heartbeat.json
[2026-01-31 20:28:54] -rw------- 1 boinc boinc      1029 Jan 31 20:28 memory_monitor_summary.json
[2026-01-31 20:28:54] -rw------- 1 boinc boinc    288265 Jan 31 20:28 log.48431080._002796.job.log.tgz.1
[2026-01-31 20:28:54] -rw------- 1 boinc boinc      6312 Jan 31 20:28 heartbeat.json
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc      8192 Jan 31 20:28 boinc_mmap_file
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc        27 Jan 31 20:28 wrapper_checkpoint.txt
[2026-01-31 20:28:54] -rw------- 1 boinc boinc       746 Jan 31 20:28 pilotlog.txt
[2026-01-31 20:28:54] -rw------- 1 boinc boinc    949658 Jan 31 20:28 log.48431080._002796.job.log.1
[2026-01-31 20:28:54] -rw------- 1 boinc boinc       357 Jan 31 20:28 output.list
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc       620 Jan 31 20:28 runtime_log
[2026-01-31 20:28:54] -rw------- 1 boinc boinc   1259520 Jan 31 20:28 result.tar.gz
[2026-01-31 20:28:54] -rw------- 1 boinc boinc       661 Jan 31 20:28 wyPLDmwmH68n9Rq4apOajLDm4fhM0noT9bVooX4SDmvbMKDmaOExJo.diag
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc      8916 Jan 31 20:28 runtime_log.err
[2026-01-31 20:28:54] -rw-r--r-- 1 boinc boinc     11549 Jan 31 20:28 stderr.txt
[2026-01-31 20:28:54] HITS file was successfully produced:
[2026-01-31 20:28:54] -rw------- 1 boinc boinc 256698127 Jan 31 20:27 shared/HITS.pool.root.1
[2026-01-31 20:28:54]  *** Contents of shared directory: ***
[2026-01-31 20:28:54] total 884968
[2026-01-31 20:28:54] -rw-r--r-- 2 boinc boinc 647621645 Jan 31 18:38 ATLAS.root_0
[2026-01-31 20:28:54] -rw-r--r-- 2 boinc boinc    597768 Jan 31 18:38 input.tar.gz
[2026-01-31 20:28:54] -rw-r--r-- 2 boinc boinc     15845 Jan 31 18:38 start_atlas.sh
[2026-01-31 20:28:54] -rw------- 1 boinc boinc 256698127 Jan 31 20:27 HITS.pool.root.1
[2026-01-31 20:28:54] -rw------- 1 boinc boinc   1259520 Jan 31 20:28 result.tar.gz
20:28:56 (659426): run_atlas exited; CPU time 19086.463357
20:28:56 (659426): called boinc_finish(0)

</stderr_txt>
]]>

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