Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:58:35 (629362): wrapper (7.7.26015): starting
15:58:35 (629362): wrapper: running run_atlas (--nthreads 3)
[2026-01-31 15:58:35] Arguments: --nthreads 3
[2026-01-31 15:58:35] Threads: 3
[2026-01-31 15:58:35] Checking for CVMFS
[2026-01-31 15:58:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 15:58:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 15:58:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 15:58:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 15:58:37] 2.9.2.0 4027610 4480 83560 155716 3 50 24883283 36864000 0 130560 0 2079126 99.988 129525 13732 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-31 15:58:37] CVMFS is ok
[2026-01-31 15:58:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 15:58:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 15:58:37] Further information can be found at the LHC@home message board.
[2026-01-31 15:58:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 15:58:37] Checking for apptainer binary...
[2026-01-31 15:58:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 15:58:37] Running /usr/bin/apptainer --version
[2026-01-31 15:58:37] apptainer version 1.4.1-1.1
[2026-01-31 15:58:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 15:58:37] magicA246a
[2026-01-31 15:58:37] apptainer works
[2026-01-31 15:58:58] Set ATHENA_PROC_NUMBER=3
[2026-01-31 15:58:58] Set ATHENA_CORE_NUMBER=3
[2026-01-31 15:58:58] Starting ATLAS job with PandaID=6990485728
[2026-01-31 15:58:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 17:14:19]  *** The last 200 lines of the pilot log: ***
[2026-01-31 17:14:19] 2026-01-31 16:13:34,340 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-31 17:14:19] 2026-01-31 16:13:34,340 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 17:14:19] 2026-01-31 16:13:34,341 | INFO     | will abort loop
[2026-01-31 17:14:19] 2026-01-31 16:13:34,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 17:14:19] 2026-01-31 16:13:34,916 | INFO     | [job] retrieve thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:34,919 | INFO     | [job] queue monitor thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,111 | INFO     | [data] control thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,188 | INFO     | [payload] control thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,201 | INFO     | all job control threads have been joined
[2026-01-31 17:14:19] 2026-01-31 16:13:35,346 | INFO     | [job] job monitor thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,352 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,520 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,785 | INFO     | [payload] validate_post thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:35,925 | INFO     | [job] validate thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:36,010 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:36,016 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:36,021 | INFO     | [payload] failed_post thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:36,207 | INFO     | [job] control thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:36,220 | INFO     | [data] copytool_in thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:36,390 | INFO     | [data] copytool_out thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:13:37,921 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 17:14:19] 2026-01-31 16:14:03,884 | INFO     | 4469s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-31 17:14:19] 2026-01-31 16:14:04,290 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-31 17:14:19] 2026-01-31 16:14:04,958 | INFO     | PID=633416 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-31 17:14:19] 2026-01-31 16:14:04,959 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 17:14:19] 2026-01-31 16:14:04,959 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 17:14:19] 2026-01-31 16:14:04,959 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 17:14:19] 2026-01-31 16:14:12,773 | INFO     | [monitor] cgroup control has ended
[2026-01-31 17:14:19] 2026-01-31 16:14:14,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239418627904)>', '<ExcThread(monitor, started 140238928209664)>']
[2026-01-31 17:14:19] 2026-01-31 16:14:15,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 17:14:19] 2026-01-31 16:14:15,001 | INFO     | [monitor] control thread has ended
[2026-01-31 17:14:19] 2026-01-31 16:14:19,044 | INFO     | all workflow threads have been joined
[2026-01-31 17:14:19] 2026-01-31 16:14:19,045 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 17:14:19] 2026-01-31 16:14:19,045 | INFO     | traces error code: 0
[2026-01-31 17:14:19] 2026-01-31 16:14:19,045 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 17:14:19] 2026-01-31 16:14:19,096 [wrapper] ==== pilot stdout END ====
[2026-01-31 17:14:19] 2026-01-31 16:14:19,098 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 17:14:19] 2026-01-31 16:14:19,100 [wrapper] pilotpid: 633416
[2026-01-31 17:14:19] 2026-01-31 16:14:19,103 [wrapper] Pilot exit status: 0
[2026-01-31 17:14:19] 2026-01-31 16:14:19,110 [wrapper] pandaids: 6990485728
[2026-01-31 17:14:19] 2026-01-31 16:14:19,129 [wrapper] cleanup supervisor_pilot  644158 633417
[2026-01-31 17:14:19] 2026-01-31 16:14:19,131 [wrapper] Test setup, not cleaning
[2026-01-31 17:14:19] 2026-01-31 16:14:19,134 [wrapper] apfmon messages muted
[2026-01-31 17:14:19] 2026-01-31 16:14:19,136 [wrapper] ==== wrapper stdout END ====
[2026-01-31 17:14:19] 2026-01-31 16:14:19,138 [wrapper] ==== wrapper stderr END ====
[2026-01-31 17:14:19]  *** Error codes and diagnostics ***
[2026-01-31 17:14:19]     "exeErrorCode": 0,
[2026-01-31 17:14:19]     "exeErrorDiag": "",
[2026-01-31 17:14:19]     "pilotErrorCode": 0,
[2026-01-31 17:14:19]     "pilotErrorDiag": "",
[2026-01-31 17:14:19]  *** Listing of results directory ***
[2026-01-31 17:14:19] total 667244
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc    584422 Jan 31 02:06 pilot3.tar.gz
[2026-01-31 17:14:19] -rwx------ 1 boinc boinc     36322 Jan 31 02:07 runpilot2-wrapper.sh
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc      5111 Jan 31 02:08 queuedata.json
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc       100 Jan 31 15:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 17:14:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 15:58 run_atlas
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc       105 Jan 31 15:58 job.xml
[2026-01-31 17:14:19] -rw-r--r-- 2 boinc boinc 496502744 Jan 31 15:58 EVNT.48310747._000002.pool.root.1
[2026-01-31 17:14:19] -rw-r--r-- 2 boinc boinc    597753 Jan 31 15:58 input.tar.gz
[2026-01-31 17:14:19] -rw-r--r-- 2 boinc boinc     15845 Jan 31 15:58 start_atlas.sh
[2026-01-31 17:14:19] drwxrwx--x 2 boinc boinc      4096 Jan 31 15:58 shared
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc         0 Jan 31 15:58 boinc_setup_complete
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc      6447 Jan 31 15:58 init_data.xml
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc         0 Jan 31 15:58 boinc_lockfile
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc      2514 Jan 31 15:58 pandaJob.out
[2026-01-31 17:14:19] -rw------- 1 boinc boinc   1010520 Jan 31 15:59 agis_schedconf.cvmfs.json
[2026-01-31 17:14:19] -rw------- 1 boinc boinc   1511668 Jan 31 15:59 agis_ddmendpoints.agis.ALL.json
[2026-01-31 17:14:19] -rw------- 1 boinc boinc       427 Jan 31 15:59 workernode_map.json
[2026-01-31 17:14:19] drwx------ 5 boinc boinc      4096 Jan 31 15:59 pilot3
[2026-01-31 17:14:19] -rw------- 1 boinc boinc 181044193 Jan 31 17:13 HITS.48310749._000051.pool.root.1
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc       530 Jan 31 17:13 boinc_task_state.xml
[2026-01-31 17:14:19] -rw------- 1 boinc boinc      1018 Jan 31 17:13 memory_monitor_summary.json
[2026-01-31 17:14:19] -rw------- 1 boinc boinc    232627 Jan 31 17:13 log.48310749._000051.job.log.tgz.1
[2026-01-31 17:14:19] -rw------- 1 boinc boinc        95 Jan 31 17:13 pilot_heartbeat.json
[2026-01-31 17:14:19] -rw------- 1 boinc boinc      6295 Jan 31 17:13 heartbeat.json
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc      8192 Jan 31 17:14 boinc_mmap_file
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc        27 Jan 31 17:14 wrapper_checkpoint.txt
[2026-01-31 17:14:19] -rw------- 1 boinc boinc      5048 Jan 31 17:14 pilotlog.txt
[2026-01-31 17:14:19] -rw------- 1 boinc boinc    659053 Jan 31 17:14 log.48310749._000051.job.log.1
[2026-01-31 17:14:19] -rw------- 1 boinc boinc       357 Jan 31 17:14 output.list
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc       620 Jan 31 17:14 runtime_log
[2026-01-31 17:14:19] -rw------- 1 boinc boinc    911360 Jan 31 17:14 result.tar.gz
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc      8916 Jan 31 17:14 runtime_log.err
[2026-01-31 17:14:19] -rw------- 1 boinc boinc       661 Jan 31 17:14 6WcKDmNdE68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9ZMKDm5ehjOn.diag
[2026-01-31 17:14:19] -rw-r--r-- 1 boinc boinc      7074 Jan 31 17:14 stderr.txt
[2026-01-31 17:14:19] HITS file was successfully produced:
[2026-01-31 17:14:19] -rw------- 1 boinc boinc 181044193 Jan 31 17:13 shared/HITS.pool.root.1
[2026-01-31 17:14:19]  *** Contents of shared directory: ***
[2026-01-31 17:14:19] total 663172
[2026-01-31 17:14:19] -rw-r--r-- 2 boinc boinc 496502744 Jan 31 15:58 ATLAS.root_0
[2026-01-31 17:14:19] -rw-r--r-- 2 boinc boinc    597753 Jan 31 15:58 input.tar.gz
[2026-01-31 17:14:19] -rw-r--r-- 2 boinc boinc     15845 Jan 31 15:58 start_atlas.sh
[2026-01-31 17:14:19] -rw------- 1 boinc boinc 181044193 Jan 31 17:13 HITS.pool.root.1
[2026-01-31 17:14:19] -rw------- 1 boinc boinc    911360 Jan 31 17:14 result.tar.gz
17:14:20 (629362): run_atlas exited; CPU time 12757.842793
17:14:20 (629362): called boinc_finish(0)

</stderr_txt>
]]>

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