Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:57:31 (69485): wrapper (7.7.26015): starting
09:57:31 (69485): wrapper: running run_atlas (--nthreads 3)
[2026-01-31 09:57:31] Arguments: --nthreads 3
[2026-01-31 09:57:31] Threads: 3
[2026-01-31 09:57:31] Checking for CVMFS
[2026-01-31 09:57:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 09:57:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 09:57:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 09:57:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 09:57:32] 2.9.2.0 3040 319 61040 155707 0 50 23973241 36864000 0 130560 0 186222 99.989 8279 12033 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-31 09:57:32] CVMFS is ok
[2026-01-31 09:57:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 09:57:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 09:57:32] Further information can be found at the LHC@home message board.
[2026-01-31 09:57:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 09:57:32] Checking for apptainer binary...
[2026-01-31 09:57:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 09:57:32] Running /usr/bin/apptainer --version
[2026-01-31 09:57:32] apptainer version 1.4.1-1.1
[2026-01-31 09:57:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 09:57:32] atlasA230
[2026-01-31 09:57:32] apptainer works
[2026-01-31 09:57:32] Set ATHENA_PROC_NUMBER=3
[2026-01-31 09:57:32] Set ATHENA_CORE_NUMBER=3
[2026-01-31 09:57:32] Starting ATLAS job with PandaID=6987928979
[2026-01-31 09:57:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 13:21:01]  *** The last 200 lines of the pilot log: ***
[2026-01-31 13:21:01] 2026-01-31 12:20:23,722 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,722 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,722 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,722 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | job 6987928979 has completed (purged errors)
[2026-01-31 13:21:01] 2026-01-31 12:20:23,723 | INFO     | overall cleanup function is called
[2026-01-31 13:21:01] 2026-01-31 12:20:24,045 | WARNING  | process 77950 can no longer be monitored (due to stat problems) - aborting
[2026-01-31 13:21:01] 2026-01-31 12:20:24,073 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-31 13:21:01] 2026-01-31 12:20:24,109 | INFO     | number of running child processes to parent process 77950: 1
[2026-01-31 13:21:01] 2026-01-31 12:20:24,109 | INFO     | maximum number of monitored processes: 6
[2026-01-31 13:21:01] 2026-01-31 12:20:24,109 | INFO     | aborting job monitoring since job object (job id=6987928979) has expired
[2026-01-31 13:21:01] 2026-01-31 12:20:24,724 | INFO     | --- collectZombieJob: --- 10, [77950]
[2026-01-31 13:21:01] 2026-01-31 12:20:24,725 | INFO     | zombie collector waiting for pid 77950
[2026-01-31 13:21:01] 2026-01-31 12:20:24,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 13:21:01] 2026-01-31 12:20:24,725 | INFO     | collected zombie processes
[2026-01-31 13:21:01] 2026-01-31 12:20:24,725 | INFO     | will attempt to kill all subprocesses of pid=77950
[2026-01-31 13:21:01] 2026-01-31 12:20:24,765 | INFO     | process IDs to be killed: [77950] (in reverse order)
[2026-01-31 13:21:01] 2026-01-31 12:20:24,789 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 13:21:01] 2026-01-31 12:20:24,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 13:21:01] 2026-01-31 12:20:24,790 | INFO     | did not find any defunct processes belonging to 77950
[2026-01-31 13:21:01] 2026-01-31 12:20:24,791 | INFO     | did not find any defunct processes belonging to 77950
[2026-01-31 13:21:01] 2026-01-31 12:20:24,791 | INFO     | ready for new job
[2026-01-31 13:21:01] 2026-01-31 12:20:24,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 13:21:01] 2026-01-31 12:20:24,792 | INFO     | **************************************
[2026-01-31 13:21:01] 2026-01-31 12:20:24,792 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 13:21:01] 2026-01-31 12:20:24,792 | INFO     | **************************************
[2026-01-31 13:21:01] 2026-01-31 12:20:24,792 | INFO     | 
[2026-01-31 13:21:01] 2026-01-31 12:20:24,793 | INFO     | architecture information:
[2026-01-31 13:21:01] 2026-01-31 12:20:24,793 | INFO     | executing command: cat /etc/os-release
[2026-01-31 13:21:01] 2026-01-31 12:20:24,801 | INFO     | cat /etc/os-release:
[2026-01-31 13:21:01] NAME="CentOS Linux"
[2026-01-31 13:21:01] VERSION="7 (Core)"
[2026-01-31 13:21:01] ID="centos"
[2026-01-31 13:21:01] ID_LIKE="rhel fedora"
[2026-01-31 13:21:01] VERSION_ID="7"
[2026-01-31 13:21:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 13:21:01] ANSI_COLOR="0;31"
[2026-01-31 13:21:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 13:21:01] HOME_URL="https://www.centos.org/"
[2026-01-31 13:21:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 13:21:01] 
[2026-01-31 13:21:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 13:21:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 13:21:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 13:21:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 13:21:01] 
[2026-01-31 13:21:01] 2026-01-31 12:20:24,801 | INFO     | **************************************
[2026-01-31 13:21:01] 2026-01-31 12:20:25,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-31 13:21:01] 2026-01-31 12:20:25,317 | INFO     | sufficient remaining disk space (333501693952 B)
[2026-01-31 13:21:01] 2026-01-31 12:20:25,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 13:21:01] 2026-01-31 12:20:25,317 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 13:21:01] 2026-01-31 12:20:25,317 | INFO     | update_server=False
[2026-01-31 13:21:01] 2026-01-31 12:20:25,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 13:21:01] 2026-01-31 12:20:25,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | INFO     | aborting loop
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 13:21:01] 2026-01-31 12:20:25,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 13:21:01] 2026-01-31 12:20:25,466 | INFO     | all data control threads have been joined
[2026-01-31 13:21:01] 2026-01-31 12:20:26,016 | INFO     | job.realtimelogging is not enabled
[2026-01-31 13:21:01] 2026-01-31 12:20:26,320 | INFO     | all payload control threads have been joined
[2026-01-31 13:21:01] 2026-01-31 12:20:26,323 | INFO     | [job] retrieve thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,323 | INFO     | [job] queue monitor thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,323 | INFO     | [job] job monitor thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,418 | INFO     | all job control threads have been joined
[2026-01-31 13:21:01] 2026-01-31 12:20:26,437 | INFO     | [data] copytool_in thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,471 | INFO     | [data] control thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,491 | INFO     | [payload] failed_post thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,560 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:26,983 | INFO     | [payload] validate_post thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,022 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,324 | INFO     | [data] copytool_out thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,325 | INFO     | [payload] control thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,424 | INFO     | [job] control thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,682 | INFO     | [job] validate thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,736 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,781 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:27,858 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 13:21:01] 2026-01-31 12:20:31,865 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 13:21:01] 2026-01-31 12:20:55,759 | INFO     | [monitor] cgroup control has ended
[2026-01-31 13:21:01] 2026-01-31 12:20:55,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641498838848)>', '<ExcThread(monitor, started 140641145169664)>']
[2026-01-31 13:21:01] 2026-01-31 12:20:56,460 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 13:21:01] 2026-01-31 12:20:56,461 | INFO     | [monitor] control thread has ended
[2026-01-31 13:21:01] 2026-01-31 12:21:00,984 | INFO     | all workflow threads have been joined
[2026-01-31 13:21:01] 2026-01-31 12:21:00,985 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 13:21:01] 2026-01-31 12:21:00,985 | INFO     | traces error code: 0
[2026-01-31 13:21:01] 2026-01-31 12:21:00,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 13:21:01] 2026-01-31 12:21:01,041 [wrapper] ==== pilot stdout END ====
[2026-01-31 13:21:01] 2026-01-31 12:21:01,044 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 13:21:01] 2026-01-31 12:21:01,046 [wrapper] pilotpid: 73527
[2026-01-31 13:21:01] 2026-01-31 12:21:01,048 [wrapper] Pilot exit status: 0
[2026-01-31 13:21:01] 2026-01-31 12:21:01,055 [wrapper] pandaids: 6987928979
[2026-01-31 13:21:01] 2026-01-31 12:21:01,071 [wrapper] cleanup supervisor_pilot   84289 73528
[2026-01-31 13:21:01] 2026-01-31 12:21:01,073 [wrapper] Test setup, not cleaning
[2026-01-31 13:21:01] 2026-01-31 12:21:01,075 [wrapper] apfmon messages muted
[2026-01-31 13:21:01] 2026-01-31 12:21:01,078 [wrapper] ==== wrapper stdout END ====
[2026-01-31 13:21:01] 2026-01-31 12:21:01,080 [wrapper] ==== wrapper stderr END ====
[2026-01-31 13:21:01]  *** Error codes and diagnostics ***
[2026-01-31 13:21:01]     "exeErrorCode": 0,
[2026-01-31 13:21:01]     "exeErrorDiag": "",
[2026-01-31 13:21:01]     "pilotErrorCode": 0,
[2026-01-31 13:21:01]     "pilotErrorDiag": "",
[2026-01-31 13:21:01]  *** Listing of results directory ***
[2026-01-31 13:21:01] total 479512
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc    584422 Jan 30 19:43 pilot3.tar.gz
[2026-01-31 13:21:01] -rwx------ 1 boinc boinc     36322 Jan 30 19:44 runpilot2-wrapper.sh
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc      5111 Jan 30 19:44 queuedata.json
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc       100 Jan 31 09:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 13:21:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 09:57 run_atlas
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc       105 Jan 31 09:57 job.xml
[2026-01-31 13:21:01] -rw-r--r-- 2 boinc boinc 275541737 Jan 31 09:57 EVNT.48329227._000001.pool.root.1
[2026-01-31 13:21:01] drwxrwx--x 2 boinc boinc      4096 Jan 31 09:57 shared
[2026-01-31 13:21:01] -rw-r--r-- 2 boinc boinc    597762 Jan 31 09:57 input.tar.gz
[2026-01-31 13:21:01] -rw-r--r-- 2 boinc boinc     15845 Jan 31 09:57 start_atlas.sh
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc         0 Jan 31 09:57 boinc_setup_complete
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc      6441 Jan 31 09:57 init_data.xml
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc         0 Jan 31 09:57 boinc_lockfile
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc      2597 Jan 31 09:57 pandaJob.out
[2026-01-31 13:21:01] -rw------- 1 boinc boinc   1010520 Jan 31 09:57 agis_schedconf.cvmfs.json
[2026-01-31 13:21:01] -rw------- 1 boinc boinc       429 Jan 31 09:57 workernode_map.json
[2026-01-31 13:21:01] drwx------ 5 boinc boinc      4096 Jan 31 09:57 pilot3
[2026-01-31 13:21:01] -rw------- 1 boinc boinc        95 Jan 31 13:19 pilot_heartbeat.json
[2026-01-31 13:21:01] -rw------- 1 boinc boinc 207380872 Jan 31 13:20 HITS.48329229._000019.pool.root.1
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc       530 Jan 31 13:20 boinc_task_state.xml
[2026-01-31 13:21:01] -rw------- 1 boinc boinc      1021 Jan 31 13:20 memory_monitor_summary.json
[2026-01-31 13:21:01] -rw------- 1 boinc boinc   1511668 Jan 31 13:20 agis_ddmendpoints.agis.ALL.json
[2026-01-31 13:21:01] -rw------- 1 boinc boinc    361640 Jan 31 13:20 log.48329229._000019.job.log.tgz.1
[2026-01-31 13:21:01] -rw------- 1 boinc boinc      6308 Jan 31 13:20 heartbeat.json
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc        28 Jan 31 13:20 wrapper_checkpoint.txt
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc      8192 Jan 31 13:20 boinc_mmap_file
[2026-01-31 13:21:01] -rw------- 1 boinc boinc      4624 Jan 31 13:21 pilotlog.txt
[2026-01-31 13:21:01] -rw------- 1 boinc boinc   1718501 Jan 31 13:21 log.48329229._000019.job.log.1
[2026-01-31 13:21:01] -rw------- 1 boinc boinc       357 Jan 31 13:21 output.list
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc       620 Jan 31 13:21 runtime_log
[2026-01-31 13:21:01] -rw------- 1 boinc boinc   2099200 Jan 31 13:21 result.tar.gz
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc      8912 Jan 31 13:21 runtime_log.err
[2026-01-31 13:21:01] -rw------- 1 boinc boinc       663 Jan 31 13:21 P3dKDmwe858nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPyLKDmsSHKVm.diag
[2026-01-31 13:21:01] -rw-r--r-- 1 boinc boinc     12758 Jan 31 13:21 stderr.txt
[2026-01-31 13:21:01] HITS file was successfully produced:
[2026-01-31 13:21:01] -rw------- 1 boinc boinc 207380872 Jan 31 13:20 shared/HITS.pool.root.1
[2026-01-31 13:21:01]  *** Contents of shared directory: ***
[2026-01-31 13:21:01] total 474268
[2026-01-31 13:21:01] -rw-r--r-- 2 boinc boinc 275541737 Jan 31 09:57 ATLAS.root_0
[2026-01-31 13:21:01] -rw-r--r-- 2 boinc boinc    597762 Jan 31 09:57 input.tar.gz
[2026-01-31 13:21:01] -rw-r--r-- 2 boinc boinc     15845 Jan 31 09:57 start_atlas.sh
[2026-01-31 13:21:01] -rw------- 1 boinc boinc 207380872 Jan 31 13:20 HITS.pool.root.1
[2026-01-31 13:21:01] -rw------- 1 boinc boinc   2099200 Jan 31 13:21 result.tar.gz
13:21:02 (69485): run_atlas exited; CPU time 35683.100340
13:21:02 (69485): called boinc_finish(0)

</stderr_txt>
]]>

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