Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:20:36 (3230946): wrapper (7.7.26015): starting
10:20:36 (3230946): wrapper: running run_atlas (--nthreads 3)
[2026-01-31 10:20:36] Arguments: --nthreads 3
[2026-01-31 10:20:36] Threads: 3
[2026-01-31 10:20:36] Checking for CVMFS
[2026-01-31 10:20:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-31 10:20:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-31 10:20:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-31 10:20:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-31 10:20:37] 2.9.2.0 2580697 4049 85340 155708 1 49 24480240 36864001 0 130560 0 1879247 99.988 116922 13912 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-31 10:20:37] CVMFS is ok
[2026-01-31 10:20:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-31 10:20:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-31 10:20:37] Further information can be found at the LHC@home message board.
[2026-01-31 10:20:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-31 10:20:37] Checking for apptainer binary...
[2026-01-31 10:20:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-31 10:20:37] Running /usr/bin/apptainer --version
[2026-01-31 10:20:37] apptainer version 1.4.1-1.1
[2026-01-31 10:20:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-31 10:20:37] magicA161
[2026-01-31 10:20:37] apptainer works
[2026-01-31 10:20:37] Set ATHENA_PROC_NUMBER=3
[2026-01-31 10:20:37] Set ATHENA_CORE_NUMBER=3
[2026-01-31 10:20:37] Starting ATLAS job with PandaID=6985855684
[2026-01-31 10:20:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-31 11:58:00]  *** The last 200 lines of the pilot log: ***
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,266 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | job 6985855684 has completed (purged errors)
[2026-01-31 11:58:00] 2026-01-31 10:57:28,267 | INFO     | overall cleanup function is called
[2026-01-31 11:58:00] 2026-01-31 10:57:29,271 | INFO     | --- collectZombieJob: --- 10, [3239407]
[2026-01-31 11:58:00] 2026-01-31 10:57:29,271 | INFO     | zombie collector waiting for pid 3239407
[2026-01-31 11:58:00] 2026-01-31 10:57:29,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-31 11:58:00] 2026-01-31 10:57:29,271 | INFO     | collected zombie processes
[2026-01-31 11:58:00] 2026-01-31 10:57:29,271 | INFO     | will attempt to kill all subprocesses of pid=3239407
[2026-01-31 11:58:00] 2026-01-31 10:57:29,311 | INFO     | process IDs to be killed: [3239407] (in reverse order)
[2026-01-31 11:58:00] 2026-01-31 10:57:29,334 | WARNING  | found no corresponding commands to process id(s)
[2026-01-31 11:58:00] 2026-01-31 10:57:29,334 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-31 11:58:00] 2026-01-31 10:57:29,336 | INFO     | did not find any defunct processes belonging to 3239407
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | did not find any defunct processes belonging to 3239407
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | ready for new job
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | **************************************
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | **************************************
[2026-01-31 11:58:00] 2026-01-31 10:57:29,337 | INFO     | 
[2026-01-31 11:58:00] 2026-01-31 10:57:29,338 | INFO     | architecture information:
[2026-01-31 11:58:00] 2026-01-31 10:57:29,338 | INFO     | executing command: cat /etc/os-release
[2026-01-31 11:58:00] 2026-01-31 10:57:29,346 | INFO     | cat /etc/os-release:
[2026-01-31 11:58:00] NAME="CentOS Linux"
[2026-01-31 11:58:00] VERSION="7 (Core)"
[2026-01-31 11:58:00] ID="centos"
[2026-01-31 11:58:00] ID_LIKE="rhel fedora"
[2026-01-31 11:58:00] VERSION_ID="7"
[2026-01-31 11:58:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-31 11:58:00] ANSI_COLOR="0;31"
[2026-01-31 11:58:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-31 11:58:00] HOME_URL="https://www.centos.org/"
[2026-01-31 11:58:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-31 11:58:00] 
[2026-01-31 11:58:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-31 11:58:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-31 11:58:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-31 11:58:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-31 11:58:00] 
[2026-01-31 11:58:00] 2026-01-31 10:57:29,346 | INFO     | **************************************
[2026-01-31 11:58:00] 2026-01-31 10:57:29,847 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-31 11:58:00] 2026-01-31 10:57:29,859 | INFO     | sufficient remaining disk space (377833390080 B)
[2026-01-31 11:58:00] 2026-01-31 10:57:29,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | INFO     | current server update state: UPDATING_FINAL
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | INFO     | update_server=False
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-31 11:58:00] 2026-01-31 10:57:29,860 | INFO     | aborting loop
[2026-01-31 11:58:00] 2026-01-31 10:57:30,008 | INFO     | all payload control threads have been joined
[2026-01-31 11:58:00] 2026-01-31 10:57:30,298 | INFO     | all data control threads have been joined
[2026-01-31 11:58:00] 2026-01-31 10:57:30,298 | INFO     | all job control threads have been joined
[2026-01-31 11:58:00] 2026-01-31 10:57:30,861 | INFO     | [job] retrieve thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:30,865 | INFO     | [job] queue monitor thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:30,866 | INFO     | [job] job monitor thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,014 | INFO     | [payload] control thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,078 | INFO     | [payload] execute_payloads thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,304 | INFO     | [data] control thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,304 | INFO     | [job] control thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,406 | INFO     | [payload] validate_post thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,747 | INFO     | [payload] failed_post thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:31,863 | INFO     | [data] copytool_out thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:32,075 | INFO     | [job] validate thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:32,090 | INFO     | [payload] validate_pre thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:32,103 | INFO     | [job] create_data_payload thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:32,272 | INFO     | [data] copytool_in thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:33,867 | INFO     | [data] queue_monitor thread has finished
[2026-01-31 11:58:00] 2026-01-31 10:57:54,105 | INFO     | [monitor] cgroup control has ended
[2026-01-31 11:58:00] 2026-01-31 10:57:55,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082113623872)>', '<ExcThread(monitor, started 140081482422016)>']
[2026-01-31 11:58:00] 2026-01-31 10:57:59,453 | INFO     | PID=3234988 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-31 11:58:00] 2026-01-31 10:57:59,453 | INFO     | found 0 job(s) in 20 queues
[2026-01-31 11:58:00] 2026-01-31 10:57:59,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-31 11:58:00] 2026-01-31 10:57:59,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-31 11:58:00] 2026-01-31 10:57:59,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-31 11:58:00] 2026-01-31 10:57:59,453 | INFO     | [monitor] control thread has ended
[2026-01-31 11:58:00] 2026-01-31 10:58:00,282 | INFO     | all workflow threads have been joined
[2026-01-31 11:58:00] 2026-01-31 10:58:00,283 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-31 11:58:00] 2026-01-31 10:58:00,283 | INFO     | traces error code: 0
[2026-01-31 11:58:00] 2026-01-31 10:58:00,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-31 11:58:00] 2026-01-31 10:58:00,332 [wrapper] ==== pilot stdout END ====
[2026-01-31 11:58:00] 2026-01-31 10:58:00,335 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-31 11:58:00] 2026-01-31 10:58:00,337 [wrapper] pilotpid: 3234988
[2026-01-31 11:58:00] 2026-01-31 10:58:00,339 [wrapper] Pilot exit status: 0
[2026-01-31 11:58:00] 2026-01-31 10:58:00,346 [wrapper] pandaids: 6985855684
[2026-01-31 11:58:00] 2026-01-31 10:58:00,361 [wrapper] cleanup supervisor_pilot 3244525 3234989
[2026-01-31 11:58:00] 2026-01-31 10:58:00,363 [wrapper] Test setup, not cleaning
[2026-01-31 11:58:00] 2026-01-31 10:58:00,366 [wrapper] apfmon messages muted
[2026-01-31 11:58:00] 2026-01-31 10:58:00,368 [wrapper] ==== wrapper stdout END ====
[2026-01-31 11:58:00] 2026-01-31 10:58:00,370 [wrapper] ==== wrapper stderr END ====
[2026-01-31 11:58:00]  *** Error codes and diagnostics ***
[2026-01-31 11:58:00]     "exeErrorCode": 0,
[2026-01-31 11:58:00]     "exeErrorDiag": "",
[2026-01-31 11:58:00]     "pilotErrorCode": 0,
[2026-01-31 11:58:00]     "pilotErrorDiag": "",
[2026-01-31 11:58:00]  *** Listing of results directory ***
[2026-01-31 11:58:00] total 419804
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc    584422 Jan 30 17:41 pilot3.tar.gz
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc      5111 Jan 30 17:44 queuedata.json
[2026-01-31 11:58:00] -rwx------ 1 boinc boinc     36322 Jan 30 17:44 runpilot2-wrapper.sh
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc       100 Jan 31 10:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-31 11:58:00] -rwxr-xr-x 1 boinc boinc      7986 Jan 31 10:20 run_atlas
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc       105 Jan 31 10:20 job.xml
[2026-01-31 11:58:00] -rw-r--r-- 2 boinc boinc 252531614 Jan 31 10:20 EVNT.48314334._000020.pool.root.1
[2026-01-31 11:58:00] -rw-r--r-- 2 boinc boinc    597766 Jan 31 10:20 input.tar.gz
[2026-01-31 11:58:00] -rw-r--r-- 2 boinc boinc     15845 Jan 31 10:20 start_atlas.sh
[2026-01-31 11:58:00] drwxrwx--x 2 boinc boinc      4096 Jan 31 10:20 shared
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc         0 Jan 31 10:20 boinc_setup_complete
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc      6448 Jan 31 10:20 init_data.xml
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc         0 Jan 31 10:20 boinc_lockfile
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc      2610 Jan 31 10:20 pandaJob.out
[2026-01-31 11:58:00] -rw------- 1 boinc boinc   1010520 Jan 31 10:20 agis_schedconf.cvmfs.json
[2026-01-31 11:58:00] -rw------- 1 boinc boinc   1511668 Jan 31 10:20 agis_ddmendpoints.agis.ALL.json
[2026-01-31 11:58:00] -rw------- 1 boinc boinc       426 Jan 31 10:20 workernode_map.json
[2026-01-31 11:58:00] drwx------ 5 boinc boinc      4096 Jan 31 10:20 pilot3
[2026-01-31 11:58:00] -rw------- 1 boinc boinc 171217546 Jan 31 11:57 HITS.48314336._000482.pool.root.1
[2026-01-31 11:58:00] -rw------- 1 boinc boinc        95 Jan 31 11:57 pilot_heartbeat.json
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc       529 Jan 31 11:57 boinc_task_state.xml
[2026-01-31 11:58:00] -rw------- 1 boinc boinc      1014 Jan 31 11:57 memory_monitor_summary.json
[2026-01-31 11:58:00] -rw------- 1 boinc boinc    256214 Jan 31 11:57 log.48314336._000482.job.log.tgz.1
[2026-01-31 11:58:00] -rw------- 1 boinc boinc      6299 Jan 31 11:57 heartbeat.json
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc      8192 Jan 31 11:57 boinc_mmap_file
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc        27 Jan 31 11:57 wrapper_checkpoint.txt
[2026-01-31 11:58:00] -rw------- 1 boinc boinc      4748 Jan 31 11:58 pilotlog.txt
[2026-01-31 11:58:00] -rw------- 1 boinc boinc    842730 Jan 31 11:58 log.48314336._000482.job.log.1
[2026-01-31 11:58:00] -rw------- 1 boinc boinc       357 Jan 31 11:58 output.list
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc       620 Jan 31 11:58 runtime_log
[2026-01-31 11:58:00] -rw------- 1 boinc boinc   1116160 Jan 31 11:58 result.tar.gz
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc      8911 Jan 31 11:58 runtime_log.err
[2026-01-31 11:58:00] -rw------- 1 boinc boinc       660 Jan 31 11:58 SUfKDmCn658nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2nLKDmdCQ34m.diag
[2026-01-31 11:58:00] -rw-r--r-- 1 boinc boinc     12035 Jan 31 11:58 stderr.txt
[2026-01-31 11:58:00] HITS file was successfully produced:
[2026-01-31 11:58:00] -rw------- 1 boinc boinc 171217546 Jan 31 11:57 shared/HITS.pool.root.1
[2026-01-31 11:58:00]  *** Contents of shared directory: ***
[2026-01-31 11:58:00] total 415524
[2026-01-31 11:58:00] -rw-r--r-- 2 boinc boinc 252531614 Jan 31 10:20 ATLAS.root_0
[2026-01-31 11:58:00] -rw-r--r-- 2 boinc boinc    597766 Jan 31 10:20 input.tar.gz
[2026-01-31 11:58:00] -rw-r--r-- 2 boinc boinc     15845 Jan 31 10:20 start_atlas.sh
[2026-01-31 11:58:00] -rw------- 1 boinc boinc 171217546 Jan 31 11:57 HITS.pool.root.1
[2026-01-31 11:58:00] -rw------- 1 boinc boinc   1116160 Jan 31 11:58 result.tar.gz
11:58:01 (3230946): run_atlas exited; CPU time 16695.048553
11:58:01 (3230946): called boinc_finish(0)

</stderr_txt>
]]>

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