Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:10:26 (2180323): wrapper (7.7.26015): starting
12:10:26 (2180323): wrapper: running run_atlas (--nthreads 8)
[2026-01-30 12:10:26] Arguments: --nthreads 8
[2026-01-30 12:10:26] Threads: 8
[2026-01-30 12:10:26] Checking for CVMFS
[2026-01-30 12:10:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 12:10:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 12:10:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 12:10:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 12:10:28] 2.13.3.0 15733 122493 650848 155685 3 58 17591370 32935936 20864 16776704 0 575240000 99.671 470369786 27541 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-30 12:10:28] CVMFS is ok
[2026-01-30 12:10:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 12:10:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 12:10:28] Further information can be found at the LHC@home message board.
[2026-01-30 12:10:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 12:10:28] Checking for apptainer binary...
[2026-01-30 12:10:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 12:10:28] Running /usr/bin/apptainer --version
[2026-01-30 12:10:28] apptainer version 1.4.5-2.el9
[2026-01-30 12:10:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 12:10:29] c-8-39.aglt2.org
[2026-01-30 12:10:29] apptainer works
[2026-01-30 12:10:29] Set ATHENA_PROC_NUMBER=8
[2026-01-30 12:10:29] Set ATHENA_CORE_NUMBER=8
[2026-01-30 12:10:30] Starting ATLAS job with PandaID=6985637673
[2026-01-30 12:10:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 19:44:02]  *** The last 200 lines of the pilot log: ***
[2026-01-30 19:44:02] 2026-01-31 00:43:19,741 | INFO     | total number of processed events: 400 (read)
[2026-01-30 19:44:02] 2026-01-31 00:43:19,842 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6985637673/memory_monitor_summary.json (trf name=prmon)
[2026-01-30 19:44:02] 2026-01-31 00:43:19,875 | INFO     | extracted standard info from prmon json
[2026-01-30 19:44:02] 2026-01-31 00:43:19,875 | INFO     | extracted standard memory fields from prmon json
[2026-01-30 19:44:02] 2026-01-31 00:43:19,875 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-30 19:44:02] 2026-01-31 00:43:19,904 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-30 19:44:02] 2026-01-31 00:43:19,905 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-30 19:44:02] 2026-01-31 00:43:20,005 | INFO     | fitting pss+swap vs Time
[2026-01-30 19:44:02] 2026-01-31 00:43:20,006 | INFO     | sum of square deviations: 26775137375.567844
[2026-01-30 19:44:02] 2026-01-31 00:43:20,224 | INFO     | sum of deviations: 32006248961.574627
[2026-01-30 19:44:02] 2026-01-31 00:43:20,224 | INFO     | mean x: 1769806708.1108596
[2026-01-30 19:44:02] 2026-01-31 00:43:20,224 | INFO     | mean y: 2506898.1719457014
[2026-01-30 19:44:02] 2026-01-31 00:43:20,224 | INFO     | intersect: -2113070449.5412774
[2026-01-30 19:44:02] 2026-01-31 00:43:20,225 | INFO     | chi2: 4.5330260798842525
[2026-01-30 19:44:02] 2026-01-31 00:43:20,226 | INFO     | sum of square deviations: 25876774971.18079
[2026-01-30 19:44:02] 2026-01-31 00:43:20,322 | INFO     | sum of deviations: 114492930568.4463
[2026-01-30 19:44:02] 2026-01-31 00:43:20,323 | INFO     | mean x: 1769806555.6178489
[2026-01-30 19:44:02] 2026-01-31 00:43:20,323 | INFO     | mean y: 2520833.942791762
[2026-01-30 19:44:02] 2026-01-31 00:43:20,323 | INFO     | intersect: -7828066220.186125
[2026-01-30 19:44:02] 2026-01-31 00:43:20,324 | INFO     | chi2: 2.458698301413639
[2026-01-30 19:44:02] 2026-01-31 00:43:20,324 | INFO     | current chi2=2.458698301413639 (change=45.760331882396315 %)
[2026-01-30 19:44:02] 2026-01-31 00:43:20,325 | INFO     | sum of square deviations: 24998712116.497658
[2026-01-30 19:44:02] 2026-01-31 00:43:20,394 | INFO     | sum of deviations: 112657329540.76164
[2026-01-30 19:44:02] 2026-01-31 00:43:20,405 | INFO     | mean x: 1769806403.1226852
[2026-01-30 19:44:02] 2026-01-31 00:43:20,405 | INFO     | mean y: 2520515.136574074
[2026-01-30 19:44:02] 2026-01-31 00:43:20,406 | INFO     | intersect: -7973156881.794703
[2026-01-30 19:44:02] 2026-01-31 00:43:20,406 | INFO     | chi2: 2.459240261414759
[2026-01-30 19:44:02] 2026-01-31 00:43:20,407 | INFO     | current chi2=2.459240261414759 (change=-0.02204255808077202 %)
[2026-01-30 19:44:02] 2026-01-31 00:43:20,407 | INFO     | right removable region: 431
[2026-01-30 19:44:02] 2026-01-31 00:43:20,407 | INFO     | sum of square deviations: 25876610271.18077
[2026-01-30 19:44:02] 2026-01-31 00:43:20,434 | INFO     | sum of deviations: -66412293963.21051
[2026-01-30 19:44:02] 2026-01-31 00:43:20,434 | INFO     | mean x: 1769806860.6178489
[2026-01-30 19:44:02] 2026-01-31 00:43:20,434 | INFO     | mean y: 2523551.052631579
[2026-01-30 19:44:02] 2026-01-31 00:43:20,435 | INFO     | intersect: 4544731060.216311
[2026-01-30 19:44:02] 2026-01-31 00:43:20,435 | INFO     | chi2: 2.40790231026655
[2026-01-30 19:44:02] 2026-01-31 00:43:20,436 | INFO     | current chi2=2.40790231026655 (change=46.88090763580971 %)
[2026-01-30 19:44:02] 2026-01-31 00:43:20,436 | INFO     | sum of square deviations: 24998435786.497665
[2026-01-30 19:44:02] 2026-01-31 00:43:20,473 | INFO     | sum of deviations: -93373090862.22221
[2026-01-30 19:44:02] 2026-01-31 00:43:20,473 | INFO     | mean x: 1769807013.1226852
[2026-01-30 19:44:02] 2026-01-31 00:43:20,473 | INFO     | mean y: 2528240.777777778
[2026-01-30 19:44:02] 2026-01-31 00:43:20,473 | INFO     | intersect: 6613035892.386918
[2026-01-30 19:44:02] 2026-01-31 00:43:20,474 | INFO     | chi2: 2.2485707284750367
[2026-01-30 19:44:02] 2026-01-31 00:43:20,474 | INFO     | current chi2=2.2485707284750367 (change=6.61702848625432 %)
[2026-01-30 19:44:02] 2026-01-31 00:43:20,475 | INFO     | left removable region: 20
[2026-01-30 19:44:02] 2026-01-31 00:43:20,499 | INFO     | sum of square deviations: 21527192897.523167
[2026-01-30 19:44:02] 2026-01-31 00:43:20,516 | INFO     | sum of deviations: -30052472097.88808
[2026-01-30 19:44:02] 2026-01-31 00:43:20,516 | INFO     | mean x: 1769806982.6326034
[2026-01-30 19:44:02] 2026-01-31 00:43:20,516 | INFO     | mean y: 2546081.4841849147
[2026-01-30 19:44:02] 2026-01-31 00:43:20,516 | INFO     | intersect: 2473238624.5111628
[2026-01-30 19:44:02] 2026-01-31 00:43:20,517 | INFO     | chi2: 0.054546244937831334
[2026-01-30 19:44:02] 2026-01-31 00:43:20,517 | INFO     | current memory leak: -1.40 B/s (using 411 data points, chi2=0.05)
[2026-01-30 19:44:02] 2026-01-31 00:43:20,534 | INFO     | could have reported an average CPU frequency of 2755 MHz (18 samples)
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | ..............................
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | . Timing measurements:
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | . get job = 0 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | . initial setup = 48 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | . payload setup = 50 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,535 | INFO     | . stage-in = 1 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,536 | INFO     | . payload execution = 26958 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,536 | INFO     | . stage-out = 7 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,536 | INFO     | . log creation = 1 s
[2026-01-30 19:44:02] 2026-01-31 00:43:20,536 | INFO     | ..............................
[2026-01-30 19:44:02] 2026-01-31 00:43:22,243 | INFO     | 
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | job summary report
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | --------------------------------------------------
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | PanDA job id: 6985637673
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | task id: 48318010
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | errors: (none)
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | pilot state: finished 
[2026-01-30 19:44:02] 2026-01-31 00:43:22,244 | INFO     | transexitcode: 0
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | exeerrorcode: 0
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | exeerrordiag: 
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | exitcode: 0
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | exitmsg: OK
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | cpuconsumptiontime: 53388 s
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | nevents: 400
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | neventsw: 0
[2026-01-30 19:44:02] 2026-01-31 00:43:22,245 | INFO     | pid: 2208281
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | pgrp: 2208281
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | corecount: 8
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | event service: False
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | sizes: {0: 2277839, 1: 2277839, 2: 2277895, 3: 2277895, 4: 2278356, 15: 2278356, 27015: 2313723, 27016: 2313722, 27025: 2322776, 27027: 2322832, 27030: 2323026}
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | --------------------------------------------------
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | 
[2026-01-30 19:44:02] 2026-01-31 00:43:22,246 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-30 19:44:02] 2026-01-31 00:43:22,463 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,464 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,464 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,464 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,465 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | job 6985637673 has completed (purged errors)
[2026-01-30 19:44:02] 2026-01-31 00:43:22,466 | INFO     | overall cleanup function is called
[2026-01-30 19:44:02] 2026-01-31 00:43:23,679 | INFO     | --- collectZombieJob: --- 10, [2208281]
[2026-01-30 19:44:02] 2026-01-31 00:43:23,679 | INFO     | zombie collector waiting for pid 2208281
[2026-01-30 19:44:02] 2026-01-31 00:43:23,680 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 19:44:02] 2026-01-31 00:43:23,680 | INFO     | collected zombie processes
[2026-01-30 19:44:02] 2026-01-31 00:43:23,680 | INFO     | will attempt to kill all subprocesses of pid=2208281
[2026-01-30 19:44:02] 2026-01-31 00:43:25,936 | INFO     | PID=2194644 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-30 19:44:02] 2026-01-31 00:43:25,937 | INFO     | .. there are 35 such processes running
[2026-01-30 19:44:02] 2026-01-31 00:43:26,988 | INFO     | process IDs to be killed: [2208281] (in reverse order)
[2026-01-30 19:44:02] 2026-01-31 00:43:27,322 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 19:44:02] 2026-01-31 00:43:27,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 19:44:02] 2026-01-31 00:43:27,381 | INFO     | did not find any defunct processes belonging to 2208281
[2026-01-30 19:44:02] 2026-01-31 00:43:27,398 | INFO     | did not find any defunct processes belonging to 2208281
[2026-01-30 19:44:02] 2026-01-31 00:43:27,398 | INFO     | ready for new job
[2026-01-30 19:44:02] 2026-01-31 00:43:27,399 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 19:44:02] 2026-01-31 00:43:27,402 | INFO     | **************************************
[2026-01-30 19:44:02] 2026-01-31 00:43:27,403 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 19:44:02] 2026-01-31 00:43:27,403 | INFO     | **************************************
[2026-01-30 19:44:02] 2026-01-31 00:43:27,403 | INFO     | 
[2026-01-30 19:44:02] 2026-01-31 00:43:27,445 | INFO     | architecture information:
[2026-01-30 19:44:02] 2026-01-31 00:43:27,466 | INFO     | executing command: cat /etc/os-release
[2026-01-30 19:44:02] 2026-01-31 00:43:27,537 | INFO     | cat /etc/os-release:
[2026-01-30 19:44:02] NAME="CentOS Linux"
[2026-01-30 19:44:02] VERSION="7 (Core)"
[2026-01-30 19:44:02] ID="centos"
[2026-01-30 19:44:02] ID_LIKE="rhel fedora"
[2026-01-30 19:44:02] VERSION_ID="7"
[2026-01-30 19:44:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 19:44:02] ANSI_COLOR="0;31"
[2026-01-30 19:44:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 19:44:02] HOME_URL="https://www.centos.org/"
[2026-01-30 19:44:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 19:44:02] 
[2026-01-30 19:44:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 19:44:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 19:44:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 19:44:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 19:44:02] 
[2026-01-30 19:44:02] 2026-01-31 00:43:27,538 | INFO     | **************************************
[2026-01-30 19:44:02] 2026-01-31 00:43:28,052 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-30 19:44:02] 2026-01-31 00:43:28,208 | INFO     | sufficient remaining disk space (74276929536 B)
[2026-01-30 19:44:02] 2026-01-31 00:43:28,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 19:44:02] 2026-01-31 00:43:28,234 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 19:44:02] 2026-01-31 00:43:28,234 | INFO     | update_server=False
[2026-01-30 19:44:02] 2026-01-31 00:43:28,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 19:44:02] 2026-01-31 00:43:28,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 19:44:02] 2026-01-31 00:43:28,241 | INFO     | aborting loop
[2026-01-30 19:44:02] 2026-01-31 00:43:28,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 19:44:02] 2026-01-31 00:43:28,865 | INFO     | all data control threads have been joined
[2026-01-30 19:44:02] 2026-01-31 00:43:29,240 | INFO     | [job] retrieve thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:29,250 | INFO     | [job] job monitor thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:29,374 | INFO     | all job control threads have been joined
[2026-01-30 19:44:02] 2026-01-31 00:43:29,475 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:29,679 | INFO     | all payload control threads have been joined
[2026-01-30 19:44:02] 2026-01-31 00:43:29,743 | INFO     | [job] validate thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:29,820 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:29,871 | INFO     | [data] control thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:29,897 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 19:44:02] 2026-01-31 00:43:29,987 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,182 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,256 | INFO     | [data] copytool_out thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,371 | INFO     | [data] copytool_in thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,380 | INFO     | [job] control thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,476 | INFO     | [payload] validate_post thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,571 | INFO     | [payload] failed_post thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,697 | INFO     | [payload] control thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:30,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 19:44:02] 2026-01-31 00:43:31,974 | INFO     | [job] queue monitor thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:32,276 | INFO     | [monitor] cgroup control has ended
[2026-01-30 19:44:02] 2026-01-31 00:43:33,993 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 19:44:02] 2026-01-31 00:43:36,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618183427904)>', '<ExcThread(monitor, started 140617539634944)>']
[2026-01-30 19:44:02] 2026-01-31 00:43:41,057 | INFO     | all workflow threads have been joined
[2026-01-30 19:44:02] 2026-01-31 00:43:41,057 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 19:44:02] 2026-01-31 00:43:41,058 | INFO     | traces error code: 0
[2026-01-30 19:44:02] 2026-01-31 00:43:41,058 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 19:44:02] 2026-01-31 00:43:59,866 | INFO     | PID=2194644 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-30 19:44:02] 2026-01-31 00:43:59,866 | INFO     | .. there are 35 such processes running
[2026-01-30 19:44:02] 2026-01-31 00:43:59,872 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 19:44:02] 2026-01-31 00:43:59,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 19:44:02] 2026-01-31 00:43:59,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 19:44:02] 2026-01-31 00:43:59,872 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 19:44:02] 2026-01-31 00:43:59,872 | INFO     | [monitor] control thread has ended
[2026-01-30 19:44:02] 2026-01-31 00:44:01,363 [wrapper] ==== pilot stdout END ====
[2026-01-30 19:44:02] 2026-01-31 00:44:01,405 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 19:44:02] 2026-01-31 00:44:01,422 [wrapper] pilotpid: 2194644
[2026-01-30 19:44:02] 2026-01-31 00:44:01,465 [wrapper] Pilot exit status: 0
[2026-01-30 19:44:02] 2026-01-31 00:44:01,613 [wrapper] pandaids: 6985637673
[2026-01-30 19:44:02] 2026-01-31 00:44:02,183 [wrapper] cleanup supervisor_pilot 3680615 2194645
[2026-01-30 19:44:02] 2026-01-31 00:44:02,204 [wrapper] Test setup, not cleaning
[2026-01-30 19:44:02] 2026-01-31 00:44:02,208 [wrapper] apfmon messages muted
[2026-01-30 19:44:02] 2026-01-31 00:44:02,211 [wrapper] ==== wrapper stdout END ====
[2026-01-30 19:44:02] 2026-01-31 00:44:02,213 [wrapper] ==== wrapper stderr END ====
[2026-01-30 19:44:02]  *** Error codes and diagnostics ***
[2026-01-30 19:44:02]     "exeErrorCode": 0,
[2026-01-30 19:44:02]     "exeErrorDiag": "",
[2026-01-30 19:44:02]     "pilotErrorCode": 0,
[2026-01-30 19:44:02]     "pilotErrorDiag": "",
[2026-01-30 19:44:02]  *** Listing of results directory ***
[2026-01-30 19:44:02] total 675512
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas    584422 Jan 30 05:51 pilot3.tar.gz
[2026-01-30 19:44:02] -rwx------. 1 boincer umatlas     36322 Jan 30 05:55 runpilot2-wrapper.sh
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas      5111 Jan 30 05:59 queuedata.json
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas       100 Jan 30 12:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 19:44:02] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 30 12:10 run_atlas
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas       105 Jan 30 12:10 job.xml
[2026-01-30 19:44:02] -rw-r--r--. 2 boincer umatlas 499599752 Jan 30 12:10 EVNT.48318008._000106.pool.root.1
[2026-01-30 19:44:02] -rw-r--r--. 2 boincer umatlas    597762 Jan 30 12:10 input.tar.gz
[2026-01-30 19:44:02] -rw-r--r--. 2 boincer umatlas     15845 Jan 30 12:10 start_atlas.sh
[2026-01-30 19:44:02] drwxrwx--x. 2 boincer umatlas      4096 Jan 30 12:10 shared
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas         0 Jan 30 12:10 boinc_lockfile
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas      2523 Jan 30 12:10 pandaJob.out
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas        57 Jan 30 12:10 setup.sh.local
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas   1009758 Jan 30 12:11 agis_schedconf.cvmfs.json
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas       440 Jan 30 12:12 workernode_map.json
[2026-01-30 19:44:02] drwx------. 5 boincer umatlas      4096 Jan 30 12:12 pilot3
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas 181723816 Jan 30 19:39 HITS.48318010._005594.pool.root.1
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas       531 Jan 30 19:39 boinc_task_state.xml
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas      6612 Jan 30 19:39 init_data.xml
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas      1044 Jan 30 19:43 memory_monitor_summary.json
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas   1511668 Jan 30 19:43 agis_ddmendpoints.agis.ALL.json
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas    566636 Jan 30 19:43 log.48318010._005594.job.log.tgz.1
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas      6382 Jan 30 19:43 heartbeat.json
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas      8192 Jan 30 19:43 boinc_mmap_file
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas        28 Jan 30 19:43 wrapper_checkpoint.txt
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas        95 Jan 30 19:43 pilot_heartbeat.json
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas       823 Jan 30 19:43 pilotlog.txt
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas   2660590 Jan 30 19:44 log.48318010._005594.job.log.1
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas       357 Jan 30 19:44 output.list
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas       620 Jan 30 19:44 runtime_log
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas   3246080 Jan 30 19:44 result.tar.gz
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas      9332 Jan 30 19:44 runtime_log.err
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas       655 Jan 30 19:44 1qvMDmuK158nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmdDLKDmcVmSPo.diag
[2026-01-30 19:44:02] -rw-r--r--. 1 boincer umatlas     21303 Jan 30 19:44 stderr.txt
[2026-01-30 19:44:02] HITS file was successfully produced:
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas 181723816 Jan 30 19:39 shared/HITS.pool.root.1
[2026-01-30 19:44:02]  *** Contents of shared directory: ***
[2026-01-30 19:44:02] total 669140
[2026-01-30 19:44:02] -rw-r--r--. 2 boincer umatlas 499599752 Jan 30 12:10 ATLAS.root_0
[2026-01-30 19:44:02] -rw-r--r--. 2 boincer umatlas    597762 Jan 30 12:10 input.tar.gz
[2026-01-30 19:44:02] -rw-r--r--. 2 boincer umatlas     15845 Jan 30 12:10 start_atlas.sh
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas 181723816 Jan 30 19:39 HITS.pool.root.1
[2026-01-30 19:44:02] -rw-------. 1 boincer umatlas   3246080 Jan 30 19:44 result.tar.gz
19:44:03 (2180323): run_atlas exited; CPU time 54440.494222
19:44:03 (2180323): called boinc_finish(0)

</stderr_txt>
]]>

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