Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:11:27 (3138891): wrapper (7.7.26015): starting
02:11:27 (3138891): wrapper: running run_atlas (--nthreads 4)
[2026-02-04 02:11:27] Arguments: --nthreads 4
[2026-02-04 02:11:27] Threads: 4
[2026-02-04 02:11:27] Checking for CVMFS
[2026-02-04 02:11:27] No cvmfs_config command found, will try listing directly
[2026-02-04 02:11:27] CVMFS is ok
[2026-02-04 02:11:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-04 02:11:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-04 02:11:27] Further information can be found at the LHC@home message board.
[2026-02-04 02:11:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-04 02:11:27] Checking for apptainer binary...
[2026-02-04 02:11:27] which: no apptainer in ((null))
[2026-02-04 02:11:27] apptainer is not installed, using version from CVMFS
[2026-02-04 02:11:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-04 02:11:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-02-04 02:11:27] apptainer works
[2026-02-04 02:11:27] Set ATHENA_PROC_NUMBER=4
[2026-02-04 02:11:27] Set ATHENA_CORE_NUMBER=4
[2026-02-04 02:11:27] Starting ATLAS job with PandaID=6986359677
[2026-02-04 02:11:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-04 04:48:09]  *** The last 200 lines of the pilot log: ***
[2026-02-04 04:48:09] 2026-02-04 03:47:26,032 | INFO     | log transfer has been attempted: DONE
[2026-02-04 04:48:09] 2026-02-04 03:47:26,032 | INFO     | job 6986359677 has finished - writing final server update
[2026-02-04 04:48:09] 2026-02-04 03:47:26,032 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2568314/.job.ad'
[2026-02-04 04:48:09] 2026-02-04 03:47:26,033 | INFO     | total number of processed events: 400 (read)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,057 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6986359677/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,057 | INFO     | extracted standard info from prmon json
[2026-02-04 04:48:09] 2026-02-04 03:47:26,057 | INFO     | extracted standard memory fields from prmon json
[2026-02-04 04:48:09] 2026-02-04 03:47:26,057 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-04 04:48:09] 2026-02-04 03:47:26,058 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-04 04:48:09] 2026-02-04 03:47:26,058 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-04 04:48:09] 2026-02-04 03:47:26,061 | INFO     | fitting pss+swap vs Time
[2026-02-04 04:48:09] 2026-02-04 03:47:26,061 | INFO     | sum of square deviations: 1110539892.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,062 | INFO     | sum of deviations: 19189037119.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,062 | INFO     | mean x: 1770172170.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,062 | INFO     | mean y: 2301783.9803921566
[2026-02-04 04:48:09] 2026-02-04 03:47:26,062 | INFO     | intersect: -30584532351.241093
[2026-02-04 04:48:09] 2026-02-04 03:47:26,062 | INFO     | chi2: 1.3531599980752507
[2026-02-04 04:48:09] 2026-02-04 03:47:26,063 | INFO     | sum of square deviations: 1005179777.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,063 | INFO     | sum of deviations: 18499505014.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,063 | INFO     | mean x: 1770172017.5
[2026-02-04 04:48:09] 2026-02-04 03:47:26,064 | INFO     | mean y: 2300785.581081081
[2026-02-04 04:48:09] 2026-02-04 03:47:26,064 | INFO     | intersect: -32576255670.37888
[2026-02-04 04:48:09] 2026-02-04 03:47:26,064 | INFO     | chi2: 1.3544016106424601
[2026-02-04 04:48:09] 2026-02-04 03:47:26,064 | INFO     | current chi2=1.3544016106424601 (change=-0.09175652317357387 %)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,064 | INFO     | right removable region: 147
[2026-02-04 04:48:09] 2026-02-04 03:47:26,064 | INFO     | sum of square deviations: 1005179777.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,065 | INFO     | sum of deviations: 164092836.50000018
[2026-02-04 04:48:09] 2026-02-04 03:47:26,065 | INFO     | mean x: 1770172322.5
[2026-02-04 04:48:09] 2026-02-04 03:47:26,065 | INFO     | mean y: 2328828.9662162163
[2026-02-04 04:48:09] 2026-02-04 03:47:26,065 | INFO     | intersect: -286646938.49276054
[2026-02-04 04:48:09] 2026-02-04 03:47:26,066 | INFO     | chi2: 0.00046727798151524646
[2026-02-04 04:48:09] 2026-02-04 03:47:26,066 | INFO     | current chi2=0.00046727798151524646 (change=99.96546764741937 %)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,066 | INFO     | sum of square deviations: 906703512.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,067 | INFO     | sum of deviations: 182190835.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,067 | INFO     | mean x: 1770172475.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,067 | INFO     | mean y: 2328797.06993007
[2026-02-04 04:48:09] 2026-02-04 03:47:26,068 | INFO     | intersect: -353365426.06468445
[2026-02-04 04:48:09] 2026-02-04 03:47:26,068 | INFO     | chi2: 0.0004113843285231274
[2026-02-04 04:48:09] 2026-02-04 03:47:26,068 | INFO     | current chi2=0.0004113843285231274 (change=11.961542208959257 %)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,068 | INFO     | left removable region: 20
[2026-02-04 04:48:09] 2026-02-04 03:47:26,068 | INFO     | sum of square deviations: 635130048.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,069 | INFO     | sum of deviations: 342193956.99999994
[2026-02-04 04:48:09] 2026-02-04 03:47:26,069 | INFO     | mean x: 1770172597.0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,069 | INFO     | mean y: 2328271.692913386
[2026-02-04 04:48:09] 2026-02-04 03:47:26,069 | INFO     | intersect: -951401389.575445
[2026-02-04 04:48:09] 2026-02-04 03:47:26,069 | INFO     | chi2: 0.00026276477962113454
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | current memory leak: 0.54 B/s (using 127 data points, chi2=0.00)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | could have reported an average CPU frequency of 2745 MHz (9 samples)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | ..............................
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . Timing measurements:
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . get job = 0 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . initial setup = 7 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . payload setup = 8 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . stage-in = 0 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . payload execution = 9311 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,070 | INFO     | . stage-out = 0 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,071 | INFO     | . log creation = 0 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,071 | INFO     | ..............................
[2026-02-04 04:48:09] 2026-02-04 03:47:26,160 | INFO     | 
[2026-02-04 04:48:09] 2026-02-04 03:47:26,160 | INFO     | job summary report
[2026-02-04 04:48:09] 2026-02-04 03:47:26,160 | INFO     | --------------------------------------------------
[2026-02-04 04:48:09] 2026-02-04 03:47:26,160 | INFO     | PanDA job id: 6986359677
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | task id: 48318010
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | errors: (none)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | pilot state: finished 
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | transexitcode: 0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | exeerrorcode: 0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | exeerrordiag: 
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | exitcode: 0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | exitmsg: OK
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | cpuconsumptiontime: 35697 s
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | nevents: 400
[2026-02-04 04:48:09] 2026-02-04 03:47:26,161 | INFO     | neventsw: 0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | pid: 3147940
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | pgrp: 3147940
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | corecount: 4
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | event service: False
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | sizes: {0: 2277848, 1: 2278309, 11: 2278309, 9324: 2307023, 9325: 2316099, 9327: 2316301}
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | --------------------------------------------------
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | 
[2026-02-04 04:48:09] 2026-02-04 03:47:26,162 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,193 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,195 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,195 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,195 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-04 04:48:09] 2026-02-04 03:47:26,195 | INFO     | job 6986359677 has completed (purged errors)
[2026-02-04 04:48:09] 2026-02-04 03:47:26,195 | INFO     | overall cleanup function is called
[2026-02-04 04:48:09] 2026-02-04 03:47:27,204 | INFO     | --- collectZombieJob: --- 10, [3147940]
[2026-02-04 04:48:09] 2026-02-04 03:47:27,204 | INFO     | zombie collector waiting for pid 3147940
[2026-02-04 04:48:09] 2026-02-04 03:47:27,204 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-04 04:48:09] 2026-02-04 03:47:27,204 | INFO     | collected zombie processes
[2026-02-04 04:48:09] 2026-02-04 03:47:27,204 | INFO     | will attempt to kill all subprocesses of pid=3147940
[2026-02-04 04:48:09] 2026-02-04 03:47:28,885 | INFO     | PID=3142874 has CPU usage=18.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-04 04:48:09] 2026-02-04 03:47:28,885 | INFO     | .. there are 23 such processes running
[2026-02-04 04:48:09] 2026-02-04 03:47:29,213 | WARNING  | process 3147940 can no longer be monitored (due to stat problems) - aborting
[2026-02-04 04:48:09] 2026-02-04 03:47:29,843 | INFO     | process IDs to be killed: [3147940] (in reverse order)
[2026-02-04 04:48:09] 2026-02-04 03:47:30,099 | WARNING  | found no corresponding commands to process id(s)
[2026-02-04 04:48:09] 2026-02-04 03:47:30,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-04 04:48:09] 2026-02-04 03:47:30,124 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-04 04:48:09] 2026-02-04 03:47:30,156 | INFO     | did not find any defunct processes belonging to 3147940
[2026-02-04 04:48:09] 2026-02-04 03:47:30,213 | INFO     | did not find any defunct processes belonging to 3147940
[2026-02-04 04:48:09] 2026-02-04 03:47:30,214 | INFO     | ready for new job
[2026-02-04 04:48:09] 2026-02-04 03:47:30,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-04 04:48:09] 2026-02-04 03:47:30,217 | INFO     | **************************************
[2026-02-04 04:48:09] 2026-02-04 03:47:30,217 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-04 04:48:09] 2026-02-04 03:47:30,217 | INFO     | **************************************
[2026-02-04 04:48:09] 2026-02-04 03:47:30,217 | INFO     | 
[2026-02-04 04:48:09] 2026-02-04 03:47:30,228 | INFO     | architecture information:
[2026-02-04 04:48:09] 2026-02-04 03:47:30,228 | INFO     | executing command: cat /etc/os-release
[2026-02-04 04:48:09] 2026-02-04 03:47:30,256 | INFO     | cat /etc/os-release:
[2026-02-04 04:48:09] NAME="CentOS Linux"
[2026-02-04 04:48:09] VERSION="7 (Core)"
[2026-02-04 04:48:09] ID="centos"
[2026-02-04 04:48:09] ID_LIKE="rhel fedora"
[2026-02-04 04:48:09] VERSION_ID="7"
[2026-02-04 04:48:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-04 04:48:09] ANSI_COLOR="0;31"
[2026-02-04 04:48:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-04 04:48:09] HOME_URL="https://www.centos.org/"
[2026-02-04 04:48:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-04 04:48:09] 
[2026-02-04 04:48:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-04 04:48:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-04 04:48:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-04 04:48:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-04 04:48:09] 
[2026-02-04 04:48:09] 2026-02-04 03:47:30,256 | INFO     | **************************************
[2026-02-04 04:48:09] 2026-02-04 03:47:30,760 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2026-02-04 04:48:09] 2026-02-04 03:47:30,784 | INFO     | sufficient remaining disk space (3243598938112 B)
[2026-02-04 04:48:09] 2026-02-04 03:47:30,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-04 04:48:09] 2026-02-04 03:47:30,784 | INFO     | current server update state: UPDATING_FINAL
[2026-02-04 04:48:09] 2026-02-04 03:47:30,785 | INFO     | update_server=False
[2026-02-04 04:48:09] 2026-02-04 03:47:30,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-04 04:48:09] 2026-02-04 03:47:30,785 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-04 04:48:09] 2026-02-04 03:47:30,879 | INFO     | number of running child processes to parent process 3147940: 1
[2026-02-04 04:48:09] 2026-02-04 03:47:30,879 | INFO     | maximum number of monitored processes: 6
[2026-02-04 04:48:09] 2026-02-04 03:47:30,879 | INFO     | aborting job monitoring since job object (job id=6986359677) has expired
[2026-02-04 04:48:09] 2026-02-04 03:47:30,880 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:48:09] 2026-02-04 03:47:30,880 | INFO     | will abort loop
[2026-02-04 04:48:09] 2026-02-04 03:47:31,071 | INFO     | all job control threads have been joined
[2026-02-04 04:48:09] 2026-02-04 03:47:31,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-04 04:48:09] 2026-02-04 03:47:31,644 | INFO     | all data control threads have been joined
[2026-02-04 04:48:09] 2026-02-04 03:47:31,787 | INFO     | [job] retrieve thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:31,885 | INFO     | [job] job monitor thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:31,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-04 04:48:09] 2026-02-04 03:47:31,962 | INFO     | [data] copytool_in thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,051 | INFO     | [payload] validate_post thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,058 | INFO     | all payload control threads have been joined
[2026-02-04 04:48:09] 2026-02-04 03:47:32,076 | INFO     | [job] control thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,176 | INFO     | [job] queue monitor thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,303 | INFO     | [job] validate thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,649 | INFO     | [data] control thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,722 | INFO     | [job] create_data_payload thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,911 | INFO     | [payload] failed_post thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:32,955 | INFO     | [payload] execute_payloads thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:33,063 | INFO     | [payload] control thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:33,109 | INFO     | [payload] validate_pre thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:33,228 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:33,922 | INFO     | [data] copytool_out thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:47:34,791 | INFO     | [data] queue_monitor thread has finished
[2026-02-04 04:48:09] 2026-02-04 03:48:01,754 | INFO     | PID=3142874 has CPU usage=14.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-04 04:48:09] 2026-02-04 03:48:01,755 | INFO     | .. there are 23 such processes running
[2026-02-04 04:48:09] 2026-02-04 03:48:01,758 | INFO     | found 0 job(s) in 20 queues
[2026-02-04 04:48:09] 2026-02-04 03:48:01,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-04 04:48:09] 2026-02-04 03:48:01,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-04 04:48:09] 2026-02-04 03:48:02,096 | INFO     | [monitor] cgroup control has ended
[2026-02-04 04:48:09] 2026-02-04 03:48:04,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22598381586240)>', '<ExcThread(monitor, started 22598139516672)>']
[2026-02-04 04:48:09] 2026-02-04 03:48:04,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-04 04:48:09] 2026-02-04 03:48:04,774 | INFO     | [monitor] control thread has ended
[2026-02-04 04:48:09] 2026-02-04 03:48:09,199 | INFO     | all workflow threads have been joined
[2026-02-04 04:48:09] 2026-02-04 03:48:09,199 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-04 04:48:09] 2026-02-04 03:48:09,199 | INFO     | traces error code: 0
[2026-02-04 04:48:09] 2026-02-04 03:48:09,200 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-04 04:48:09] 2026-02-04 03:48:09,343 [wrapper] ==== pilot stdout END ====
[2026-02-04 04:48:09] 2026-02-04 03:48:09,347 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-04 04:48:09] 2026-02-04 03:48:09,350 [wrapper] pilotpid: 3142874
[2026-02-04 04:48:09] 2026-02-04 03:48:09,353 [wrapper] Pilot exit status: 0
[2026-02-04 04:48:09] 2026-02-04 03:48:09,367 [wrapper] pandaids: 6986359677
[2026-02-04 04:48:09] 2026-02-04 03:48:09,512 [wrapper] cleanup supervisor_pilot 3511773 3142875
[2026-02-04 04:48:09] 2026-02-04 03:48:09,516 [wrapper] Test setup, not cleaning
[2026-02-04 04:48:09] 2026-02-04 03:48:09,520 [wrapper] apfmon messages muted
[2026-02-04 04:48:09] 2026-02-04 03:48:09,524 [wrapper] ==== wrapper stdout END ====
[2026-02-04 04:48:09] 2026-02-04 03:48:09,528 [wrapper] ==== wrapper stderr END ====
[2026-02-04 04:48:09]  *** Error codes and diagnostics ***
[2026-02-04 04:48:09]     "exeErrorCode": 0,
[2026-02-04 04:48:09]     "exeErrorDiag": "",
[2026-02-04 04:48:09]     "pilotErrorCode": 0,
[2026-02-04 04:48:09]     "pilotErrorDiag": "",
[2026-02-04 04:48:09]  *** Listing of results directory ***
[2026-02-04 04:48:09] total 664480
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc    584422 Jan 30 17:41 pilot3.tar.gz
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc      5111 Jan 30 17:41 queuedata.json
[2026-02-04 04:48:09] -rwx------ 1 boinc boinc     36322 Jan 30 17:41 runpilot2-wrapper.sh
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc       100 Feb  4 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-04 04:48:09] -rwxr-xr-x 1 boinc boinc      7986 Feb  4 02:11 run_atlas
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc       105 Feb  4 02:11 job.xml
[2026-02-04 04:48:09] -rw-r--r-- 2 boinc boinc 491530072 Feb  4 02:11 EVNT.48318008._000139.pool.root.1
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc      6687 Feb  4 02:11 init_data.xml
[2026-02-04 04:48:09] -rw-r--r-- 2 boinc boinc     15845 Feb  4 02:11 start_atlas.sh
[2026-02-04 04:48:09] drwxrwx--x 2 boinc boinc      4096 Feb  4 02:11 shared
[2026-02-04 04:48:09] -rw-r--r-- 2 boinc boinc    597753 Feb  4 02:11 input.tar.gz
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc         0 Feb  4 02:11 boinc_lockfile
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc      2522 Feb  4 02:11 pandaJob.out
[2026-02-04 04:48:09] -rw------- 1 boinc boinc   1009228 Feb  4 02:11 agis_schedconf.cvmfs.json
[2026-02-04 04:48:09] -rw------- 1 boinc boinc   1511668 Feb  4 02:11 agis_ddmendpoints.agis.ALL.json
[2026-02-04 04:48:09] -rw------- 1 boinc boinc       442 Feb  4 02:11 workernode_map.json
[2026-02-04 04:48:09] drwx------ 5 boinc boinc      4096 Feb  4 02:11 pilot3
[2026-02-04 04:48:09] -rw------- 1 boinc boinc 181672777 Feb  4 04:46 HITS.48318010._007228.pool.root.1
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc       530 Feb  4 04:46 boinc_task_state.xml
[2026-02-04 04:48:09] -rw------- 1 boinc boinc      1028 Feb  4 04:47 memory_monitor_summary.json
[2026-02-04 04:48:09] -rw------- 1 boinc boinc    321401 Feb  4 04:47 log.48318010._007228.job.log.tgz.1
[2026-02-04 04:48:09] -rw------- 1 boinc boinc      6344 Feb  4 04:47 heartbeat.json
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc      8192 Feb  4 04:47 boinc_mmap_file
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc        27 Feb  4 04:47 wrapper_checkpoint.txt
[2026-02-04 04:48:09] -rw------- 1 boinc boinc        95 Feb  4 04:48 pilot_heartbeat.json
[2026-02-04 04:48:09] -rw------- 1 boinc boinc      5122 Feb  4 04:48 pilotlog.txt
[2026-02-04 04:48:09] -rw------- 1 boinc boinc   1323557 Feb  4 04:48 log.48318010._007228.job.log.1
[2026-02-04 04:48:09] -rw------- 1 boinc boinc       357 Feb  4 04:48 output.list
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc       620 Feb  4 04:48 runtime_log
[2026-02-04 04:48:09] -rw------- 1 boinc boinc   1658880 Feb  4 04:48 result.tar.gz
[2026-02-04 04:48:09] -rw------- 1 boinc boinc       662 Feb  4 04:48 woWKDm5j658n9Rq4apOajLDm4fhM0noT9bVooX4SDmUPLKDmjOQiVo.diag
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc      9204 Feb  4 04:48 runtime_log.err
[2026-02-04 04:48:09] -rw-r--r-- 1 boinc boinc     21199 Feb  4 04:48 stderr.txt
[2026-02-04 04:48:09] HITS file was successfully produced:
[2026-02-04 04:48:09] -rw------- 1 boinc boinc 181672777 Feb  4 04:46 shared/HITS.pool.root.1
[2026-02-04 04:48:09]  *** Contents of shared directory: ***
[2026-02-04 04:48:09] total 659652
[2026-02-04 04:48:09] -rw-r--r-- 2 boinc boinc 491530072 Feb  4 02:11 ATLAS.root_0
[2026-02-04 04:48:09] -rw-r--r-- 2 boinc boinc     15845 Feb  4 02:11 start_atlas.sh
[2026-02-04 04:48:09] -rw-r--r-- 2 boinc boinc    597753 Feb  4 02:11 input.tar.gz
[2026-02-04 04:48:09] -rw------- 1 boinc boinc 181672777 Feb  4 04:46 HITS.pool.root.1
[2026-02-04 04:48:09] -rw------- 1 boinc boinc   1658880 Feb  4 04:48 result.tar.gz
04:48:10 (3138891): run_atlas exited; CPU time 36276.660485
04:48:10 (3138891): called boinc_finish(0)

</stderr_txt>
]]>

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