Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:13:52 (1902398): wrapper (7.7.26015): starting
19:13:52 (1902398): wrapper: running run_atlas (--nthreads 3)
[2026-01-30 19:13:52] Arguments: --nthreads 3
[2026-01-30 19:13:52] Threads: 3
[2026-01-30 19:13:52] Checking for CVMFS
[2026-01-30 19:13:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 19:13:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 19:13:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 19:13:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 19:13:53] 2.9.2.0 1450433 3013 68276 155687 3 1 24975208 36864001 0 130560 0 1283456 99.985 89747 15188 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 19:13:53] CVMFS is ok
[2026-01-30 19:13:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 19:13:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 19:13:53] Further information can be found at the LHC@home message board.
[2026-01-30 19:13:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 19:13:53] Checking for apptainer binary...
[2026-01-30 19:13:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 19:13:53] Running /usr/bin/apptainer --version
[2026-01-30 19:13:53] apptainer version 1.4.1-1.1
[2026-01-30 19:13:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 19:13:53] atlasA223a
[2026-01-30 19:13:53] apptainer works
[2026-01-30 19:13:53] Set ATHENA_PROC_NUMBER=3
[2026-01-30 19:13:53] Set ATHENA_CORE_NUMBER=3
[2026-01-30 19:13:53] Starting ATLAS job with PandaID=6992588267
[2026-01-30 19:13:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 20:36:24]  *** The last 200 lines of the pilot log: ***
[2026-01-30 20:36:24] 2026-01-30 19:35:52,939 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-30 20:36:24] 2026-01-30 19:35:52,989 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,989 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,990 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,990 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,992 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 20:36:24] 2026-01-30 19:35:52,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,992 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 20:36:24] 2026-01-30 19:35:52,993 | INFO     | job 6992588267 has completed (purged errors)
[2026-01-30 20:36:24] 2026-01-30 19:35:52,993 | INFO     | overall cleanup function is called
[2026-01-30 20:36:24] 2026-01-30 19:35:54,002 | INFO     | --- collectZombieJob: --- 10, [1910887]
[2026-01-30 20:36:24] 2026-01-30 19:35:54,003 | INFO     | zombie collector waiting for pid 1910887
[2026-01-30 20:36:24] 2026-01-30 19:35:54,004 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 20:36:24] 2026-01-30 19:35:54,004 | INFO     | collected zombie processes
[2026-01-30 20:36:24] 2026-01-30 19:35:54,004 | INFO     | will attempt to kill all subprocesses of pid=1910887
[2026-01-30 20:36:24] 2026-01-30 19:35:54,043 | INFO     | process IDs to be killed: [1910887] (in reverse order)
[2026-01-30 20:36:24] 2026-01-30 19:35:54,068 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 20:36:24] 2026-01-30 19:35:54,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 20:36:24] 2026-01-30 19:35:54,070 | INFO     | did not find any defunct processes belonging to 1910887
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | did not find any defunct processes belonging to 1910887
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | ready for new job
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | **************************************
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | **************************************
[2026-01-30 20:36:24] 2026-01-30 19:35:54,071 | INFO     | 
[2026-01-30 20:36:24] 2026-01-30 19:35:54,072 | INFO     | architecture information:
[2026-01-30 20:36:24] 2026-01-30 19:35:54,072 | INFO     | executing command: cat /etc/os-release
[2026-01-30 20:36:24] 2026-01-30 19:35:54,082 | INFO     | cat /etc/os-release:
[2026-01-30 20:36:24] NAME="CentOS Linux"
[2026-01-30 20:36:24] VERSION="7 (Core)"
[2026-01-30 20:36:24] ID="centos"
[2026-01-30 20:36:24] ID_LIKE="rhel fedora"
[2026-01-30 20:36:24] VERSION_ID="7"
[2026-01-30 20:36:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 20:36:24] ANSI_COLOR="0;31"
[2026-01-30 20:36:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 20:36:24] HOME_URL="https://www.centos.org/"
[2026-01-30 20:36:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 20:36:24] 
[2026-01-30 20:36:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 20:36:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 20:36:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 20:36:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 20:36:24] 
[2026-01-30 20:36:24] 2026-01-30 19:35:54,082 | INFO     | **************************************
[2026-01-30 20:36:24] 2026-01-30 19:35:54,586 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | INFO     | sufficient remaining disk space (332920782848 B)
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | INFO     | update_server=False
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 20:36:24] 2026-01-30 19:35:54,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | INFO     | aborting loop
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 20:36:24] 2026-01-30 19:35:54,600 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 20:36:24] 2026-01-30 19:35:55,243 | INFO     | all payload control threads have been joined
[2026-01-30 20:36:24] 2026-01-30 19:35:55,605 | INFO     | [job] retrieve thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:55,605 | INFO     | [job] job monitor thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:55,605 | INFO     | [job] queue monitor thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:55,661 | INFO     | all data control threads have been joined
[2026-01-30 20:36:24] 2026-01-30 19:35:55,681 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:55,769 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:55,930 | INFO     | [data] copytool_in thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,001 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,118 | INFO     | [payload] failed_post thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,226 | INFO     | all job control threads have been joined
[2026-01-30 20:36:24] 2026-01-30 19:35:56,249 | INFO     | [payload] control thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,370 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,605 | INFO     | [data] copytool_out thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,667 | INFO     | [data] control thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,799 | INFO     | [payload] validate_post thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:56,919 | INFO     | [job] validate thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:57,232 | INFO     | [job] control thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:35:58,607 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 20:36:24] 2026-01-30 19:36:18,360 | INFO     | [monitor] cgroup control has ended
[2026-01-30 20:36:24] 2026-01-30 19:36:19,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965728986944)>', '<ExcThread(monitor, started 139964855609088)>']
[2026-01-30 20:36:24] 2026-01-30 19:36:20,729 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 20:36:24] 2026-01-30 19:36:20,729 | INFO     | [monitor] control thread has ended
[2026-01-30 20:36:24] 2026-01-30 19:36:24,812 | INFO     | all workflow threads have been joined
[2026-01-30 20:36:24] 2026-01-30 19:36:24,813 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 20:36:24] 2026-01-30 19:36:24,813 | INFO     | traces error code: 0
[2026-01-30 20:36:24] 2026-01-30 19:36:24,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 20:36:24] 2026-01-30 19:36:24,861 [wrapper] ==== pilot stdout END ====
[2026-01-30 20:36:24] 2026-01-30 19:36:24,864 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 20:36:24] 2026-01-30 19:36:24,867 [wrapper] pilotpid: 1906453
[2026-01-30 20:36:24] 2026-01-30 19:36:24,870 [wrapper] Pilot exit status: 0
[2026-01-30 20:36:24] 2026-01-30 19:36:24,878 [wrapper] pandaids: 6992588267
[2026-01-30 20:36:24] 2026-01-30 19:36:24,894 [wrapper] cleanup supervisor_pilot 1916140 1906454
[2026-01-30 20:36:24] 2026-01-30 19:36:24,897 [wrapper] Test setup, not cleaning
[2026-01-30 20:36:24] 2026-01-30 19:36:24,900 [wrapper] apfmon messages muted
[2026-01-30 20:36:24] 2026-01-30 19:36:24,902 [wrapper] ==== wrapper stdout END ====
[2026-01-30 20:36:24] 2026-01-30 19:36:24,905 [wrapper] ==== wrapper stderr END ====
[2026-01-30 20:36:24]  *** Error codes and diagnostics ***
[2026-01-30 20:36:24]     "exeErrorCode": 0,
[2026-01-30 20:36:24]     "exeErrorDiag": "",
[2026-01-30 20:36:24]     "pilotErrorCode": 0,
[2026-01-30 20:36:24]     "pilotErrorDiag": "",
[2026-01-30 20:36:24]  *** Listing of results directory ***
[2026-01-30 20:36:24] total 661704
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc    584422 Jan 30 00:19 pilot3.tar.gz
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc      5111 Jan 30 00:19 queuedata.json
[2026-01-30 20:36:24] -rwx------ 1 boinc boinc     36322 Jan 30 00:20 runpilot2-wrapper.sh
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc       100 Jan 30 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 20:36:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 19:13 run_atlas
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc       105 Jan 30 19:13 job.xml
[2026-01-30 20:36:24] -rw-r--r-- 2 boinc boinc 493864383 Jan 30 19:13 EVNT.48310585._000073.pool.root.1
[2026-01-30 20:36:24] -rw-r--r-- 2 boinc boinc    597760 Jan 30 19:13 input.tar.gz
[2026-01-30 20:36:24] -rw-r--r-- 2 boinc boinc     15845 Jan 30 19:13 start_atlas.sh
[2026-01-30 20:36:24] drwxrwx--x 2 boinc boinc      4096 Jan 30 19:13 shared
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc         0 Jan 30 19:13 boinc_setup_complete
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc      6199 Jan 30 19:13 init_data.xml
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc         0 Jan 30 19:13 boinc_lockfile
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc      2528 Jan 30 19:13 pandaJob.out
[2026-01-30 20:36:24] -rw------- 1 boinc boinc   1010529 Jan 30 19:14 agis_schedconf.cvmfs.json
[2026-01-30 20:36:24] -rw------- 1 boinc boinc   1511668 Jan 30 19:14 agis_ddmendpoints.agis.ALL.json
[2026-01-30 20:36:24] -rw------- 1 boinc boinc       422 Jan 30 19:14 workernode_map.json
[2026-01-30 20:36:24] drwx------ 5 boinc boinc      4096 Jan 30 19:14 pilot3
[2026-01-30 20:36:24] -rw------- 1 boinc boinc        95 Jan 30 20:35 pilot_heartbeat.json
[2026-01-30 20:36:24] -rw------- 1 boinc boinc 177819588 Jan 30 20:35 HITS.48310589._003695.pool.root.1
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc       530 Jan 30 20:35 boinc_task_state.xml
[2026-01-30 20:36:24] -rw------- 1 boinc boinc      1017 Jan 30 20:35 memory_monitor_summary.json
[2026-01-30 20:36:24] -rw------- 1 boinc boinc    263678 Jan 30 20:35 log.48310589._003695.job.log.tgz.1
[2026-01-30 20:36:24] -rw------- 1 boinc boinc      6313 Jan 30 20:35 heartbeat.json
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc        27 Jan 30 20:36 wrapper_checkpoint.txt
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc      8192 Jan 30 20:36 boinc_mmap_file
[2026-01-30 20:36:24] -rw------- 1 boinc boinc      4552 Jan 30 20:36 pilotlog.txt
[2026-01-30 20:36:24] -rw------- 1 boinc boinc    718907 Jan 30 20:36 log.48310589._003695.job.log.1
[2026-01-30 20:36:24] -rw------- 1 boinc boinc       357 Jan 30 20:36 output.list
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc       620 Jan 30 20:36 runtime_log
[2026-01-30 20:36:24] -rw------- 1 boinc boinc   1003520 Jan 30 20:36 result.tar.gz
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc      8916 Jan 30 20:36 runtime_log.err
[2026-01-30 20:36:24] -rw------- 1 boinc boinc       661 Jan 30 20:36 jayLDmKUq58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2lJKDmnqpY5m.diag
[2026-01-30 20:36:24] -rw-r--r-- 1 boinc boinc     12863 Jan 30 20:36 stderr.txt
[2026-01-30 20:36:24] HITS file was successfully produced:
[2026-01-30 20:36:24] -rw------- 1 boinc boinc 177819588 Jan 30 20:35 shared/HITS.pool.root.1
[2026-01-30 20:36:24]  *** Contents of shared directory: ***
[2026-01-30 20:36:24] total 657532
[2026-01-30 20:36:24] -rw-r--r-- 2 boinc boinc 493864383 Jan 30 19:13 ATLAS.root_0
[2026-01-30 20:36:24] -rw-r--r-- 2 boinc boinc    597760 Jan 30 19:13 input.tar.gz
[2026-01-30 20:36:24] -rw-r--r-- 2 boinc boinc     15845 Jan 30 19:13 start_atlas.sh
[2026-01-30 20:36:24] -rw------- 1 boinc boinc 177819588 Jan 30 20:35 HITS.pool.root.1
[2026-01-30 20:36:24] -rw------- 1 boinc boinc   1003520 Jan 30 20:36 result.tar.gz
20:36:26 (1902398): run_atlas exited; CPU time 14024.298677
20:36:26 (1902398): called boinc_finish(0)

</stderr_txt>
]]>

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