Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:53:05 (2190955): wrapper (7.7.26015): starting
16:53:05 (2190955): wrapper: running run_atlas (--nthreads 2)
[2026-01-30 16:53:05] Arguments: --nthreads 2
[2026-01-30 16:53:05] Threads: 2
[2026-01-30 16:53:05] Checking for CVMFS
[2026-01-30 16:53:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 16:53:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 16:53:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 16:53:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 16:53:05] 2.9.2.0 1886763 2857 59376 155682 2 50 21193879 36864001 0 130560 0 894960 99.983 78319 15745 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 16:53:05] CVMFS is ok
[2026-01-30 16:53:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 16:53:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 16:53:05] Further information can be found at the LHC@home message board.
[2026-01-30 16:53:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 16:53:05] Checking for apptainer binary...
[2026-01-30 16:53:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 16:53:05] Running /usr/bin/apptainer --version
[2026-01-30 16:53:05] apptainer version 1.4.1-1.1
[2026-01-30 16:53:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 16:53:05] madmaxA277a
[2026-01-30 16:53:05] apptainer works
[2026-01-30 16:53:05] Set ATHENA_PROC_NUMBER=2
[2026-01-30 16:53:05] Set ATHENA_CORE_NUMBER=2
[2026-01-30 16:53:05] Starting ATLAS job with PandaID=6984884333
[2026-01-30 16:53:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 19:01:41]  *** The last 200 lines of the pilot log: ***
[2026-01-30 19:01:41] 2026-01-30 18:01:09,578 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,578 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,578 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,578 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,578 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,578 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,579 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,579 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,579 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,579 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,579 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,579 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,580 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,580 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,580 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,580 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 19:01:41] 2026-01-30 18:01:09,580 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,581 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 19:01:41] 2026-01-30 18:01:09,581 | INFO     | job 6984884333 has completed (purged errors)
[2026-01-30 19:01:41] 2026-01-30 18:01:09,581 | INFO     | overall cleanup function is called
[2026-01-30 19:01:41] 2026-01-30 18:01:10,586 | INFO     | --- collectZombieJob: --- 10, [2199391]
[2026-01-30 19:01:41] 2026-01-30 18:01:10,587 | INFO     | zombie collector waiting for pid 2199391
[2026-01-30 19:01:41] 2026-01-30 18:01:10,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 19:01:41] 2026-01-30 18:01:10,587 | INFO     | collected zombie processes
[2026-01-30 19:01:41] 2026-01-30 18:01:10,587 | INFO     | will attempt to kill all subprocesses of pid=2199391
[2026-01-30 19:01:41] 2026-01-30 18:01:10,618 | INFO     | process IDs to be killed: [2199391] (in reverse order)
[2026-01-30 19:01:41] 2026-01-30 18:01:10,639 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 19:01:41] 2026-01-30 18:01:10,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 19:01:41] 2026-01-30 18:01:10,640 | INFO     | did not find any defunct processes belonging to 2199391
[2026-01-30 19:01:41] 2026-01-30 18:01:10,640 | INFO     | did not find any defunct processes belonging to 2199391
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | ready for new job
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | **************************************
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | **************************************
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | 
[2026-01-30 19:01:41] 2026-01-30 18:01:10,641 | INFO     | architecture information:
[2026-01-30 19:01:41] 2026-01-30 18:01:10,642 | INFO     | executing command: cat /etc/os-release
[2026-01-30 19:01:41] 2026-01-30 18:01:10,650 | INFO     | cat /etc/os-release:
[2026-01-30 19:01:41] NAME="CentOS Linux"
[2026-01-30 19:01:41] VERSION="7 (Core)"
[2026-01-30 19:01:41] ID="centos"
[2026-01-30 19:01:41] ID_LIKE="rhel fedora"
[2026-01-30 19:01:41] VERSION_ID="7"
[2026-01-30 19:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 19:01:41] ANSI_COLOR="0;31"
[2026-01-30 19:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 19:01:41] HOME_URL="https://www.centos.org/"
[2026-01-30 19:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 19:01:41] 
[2026-01-30 19:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 19:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 19:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 19:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 19:01:41] 
[2026-01-30 19:01:41] 2026-01-30 18:01:10,650 | INFO     | **************************************
[2026-01-30 19:01:41] 2026-01-30 18:01:11,153 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-30 19:01:41] 2026-01-30 18:01:11,165 | INFO     | sufficient remaining disk space (495334719488 B)
[2026-01-30 19:01:41] 2026-01-30 18:01:11,165 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 19:01:41] 2026-01-30 18:01:11,165 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 19:01:41] 2026-01-30 18:01:11,165 | INFO     | update_server=False
[2026-01-30 19:01:41] 2026-01-30 18:01:11,165 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 19:01:41] 2026-01-30 18:01:11,165 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 19:01:41] 2026-01-30 18:01:11,701 | INFO     | all data control threads have been joined
[2026-01-30 19:01:41] 2026-01-30 18:01:12,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 19:01:41] 2026-01-30 18:01:12,077 | INFO     | aborting loop
[2026-01-30 19:01:41] 2026-01-30 18:01:12,171 | INFO     | [job] retrieve thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:12,171 | INFO     | [job] queue monitor thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:12,204 | INFO     | [data] copytool_in thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:12,214 | INFO     | [payload] validate_post thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:12,335 | INFO     | all payload control threads have been joined
[2026-01-30 19:01:41] 2026-01-30 18:01:12,355 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 19:01:41] 2026-01-30 18:01:12,472 | INFO     | all job control threads have been joined
[2026-01-30 19:01:41] 2026-01-30 18:01:12,707 | INFO     | [data] control thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:12,879 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 19:01:41] 2026-01-30 18:01:13,083 | INFO     | [job] job monitor thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,174 | INFO     | [payload] failed_post thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,341 | INFO     | [payload] control thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,390 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,398 | INFO     | [job] validate thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,471 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,476 | INFO     | [job] control thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:13,519 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:14,361 | INFO     | [data] copytool_out thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:16,886 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:21,824 | INFO     | job.realtimelogging is not enabled
[2026-01-30 19:01:41] 2026-01-30 18:01:22,830 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 19:01:41] 2026-01-30 18:01:35,059 | INFO     | [monitor] cgroup control has ended
[2026-01-30 19:01:41] 2026-01-30 18:01:36,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944485537600)>', '<ExcThread(monitor, started 139943691138816)>']
[2026-01-30 19:01:41] 2026-01-30 18:01:40,974 | INFO     | PID=2194982 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-30 19:01:41] 2026-01-30 18:01:40,974 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 19:01:41] 2026-01-30 18:01:40,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 19:01:41] 2026-01-30 18:01:40,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 19:01:41] 2026-01-30 18:01:40,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 19:01:41] 2026-01-30 18:01:40,975 | INFO     | [monitor] control thread has ended
[2026-01-30 19:01:41] 2026-01-30 18:01:41,594 | INFO     | all workflow threads have been joined
[2026-01-30 19:01:41] 2026-01-30 18:01:41,594 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 19:01:41] 2026-01-30 18:01:41,595 | INFO     | traces error code: 0
[2026-01-30 19:01:41] 2026-01-30 18:01:41,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 19:01:41] 2026-01-30 18:01:41,637 [wrapper] ==== pilot stdout END ====
[2026-01-30 19:01:41] 2026-01-30 18:01:41,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 19:01:41] 2026-01-30 18:01:41,642 [wrapper] pilotpid: 2194982
[2026-01-30 19:01:41] 2026-01-30 18:01:41,644 [wrapper] Pilot exit status: 0
[2026-01-30 19:01:41] 2026-01-30 18:01:41,649 [wrapper] pandaids: 6984884333
[2026-01-30 19:01:41] 2026-01-30 18:01:41,660 [wrapper] cleanup supervisor_pilot 2204683 2194983
[2026-01-30 19:01:41] 2026-01-30 18:01:41,662 [wrapper] Test setup, not cleaning
[2026-01-30 19:01:41] 2026-01-30 18:01:41,664 [wrapper] apfmon messages muted
[2026-01-30 19:01:41] 2026-01-30 18:01:41,666 [wrapper] ==== wrapper stdout END ====
[2026-01-30 19:01:41] 2026-01-30 18:01:41,668 [wrapper] ==== wrapper stderr END ====
[2026-01-30 19:01:41]  *** Error codes and diagnostics ***
[2026-01-30 19:01:41]     "exeErrorCode": 0,
[2026-01-30 19:01:41]     "exeErrorDiag": "",
[2026-01-30 19:01:41]     "pilotErrorCode": 0,
[2026-01-30 19:01:41]     "pilotErrorDiag": "",
[2026-01-30 19:01:41]  *** Listing of results directory ***
[2026-01-30 19:01:41] total 667632
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc      5111 Jan 30 02:19 queuedata.json
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc    584422 Jan 30 02:19 pilot3.tar.gz
[2026-01-30 19:01:41] -rwx------ 1 boinc boinc     36322 Jan 30 02:19 runpilot2-wrapper.sh
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc       100 Jan 30 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 19:01:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 16:53 run_atlas
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc       105 Jan 30 16:53 job.xml
[2026-01-30 19:01:41] -rw-r--r-- 2 boinc boinc 492287719 Jan 30 16:53 EVNT.48318008._000035.pool.root.1
[2026-01-30 19:01:41] -rw-r--r-- 2 boinc boinc    597754 Jan 30 16:53 input.tar.gz
[2026-01-30 19:01:41] -rw-r--r-- 2 boinc boinc     15845 Jan 30 16:53 start_atlas.sh
[2026-01-30 19:01:41] drwxrwx--x 2 boinc boinc      4096 Jan 30 16:53 shared
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc         0 Jan 30 16:53 boinc_setup_complete
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc      6210 Jan 30 16:53 init_data.xml
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc         0 Jan 30 16:53 boinc_lockfile
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc      2523 Jan 30 16:53 pandaJob.out
[2026-01-30 19:01:41] -rw------- 1 boinc boinc   1010138 Jan 30 16:53 agis_schedconf.cvmfs.json
[2026-01-30 19:01:41] -rw------- 1 boinc boinc   1511668 Jan 30 16:53 agis_ddmendpoints.agis.ALL.json
[2026-01-30 19:01:41] -rw------- 1 boinc boinc       423 Jan 30 16:53 workernode_map.json
[2026-01-30 19:01:41] drwx------ 5 boinc boinc      4096 Jan 30 16:53 pilot3
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc       530 Jan 30 19:00 boinc_task_state.xml
[2026-01-30 19:01:41] -rw------- 1 boinc boinc 184620624 Jan 30 19:00 HITS.48318010._002058.pool.root.1
[2026-01-30 19:01:41] -rw------- 1 boinc boinc        95 Jan 30 19:00 pilot_heartbeat.json
[2026-01-30 19:01:41] -rw------- 1 boinc boinc      1018 Jan 30 19:01 memory_monitor_summary.json
[2026-01-30 19:01:41] -rw------- 1 boinc boinc    302465 Jan 30 19:01 log.48318010._002058.job.log.tgz.1
[2026-01-30 19:01:41] -rw------- 1 boinc boinc      6307 Jan 30 19:01 heartbeat.json
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc      8192 Jan 30 19:01 boinc_mmap_file
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc        27 Jan 30 19:01 wrapper_checkpoint.txt
[2026-01-30 19:01:41] -rw------- 1 boinc boinc      4820 Jan 30 19:01 pilotlog.txt
[2026-01-30 19:01:41] -rw------- 1 boinc boinc   1104329 Jan 30 19:01 log.48318010._002058.job.log.1
[2026-01-30 19:01:41] -rw------- 1 boinc boinc       357 Jan 30 19:01 output.list
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc       620 Jan 30 19:01 runtime_log
[2026-01-30 19:01:41] -rw------- 1 boinc boinc   1423360 Jan 30 19:01 result.tar.gz
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc      8921 Jan 30 19:01 runtime_log.err
[2026-01-30 19:01:41] -rw------- 1 boinc boinc       662 Jan 30 19:01 ZSoNDmMLs58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmXyJKDmM8xcfm.diag
[2026-01-30 19:01:41] -rw-r--r-- 1 boinc boinc     12737 Jan 30 19:01 stderr.txt
[2026-01-30 19:01:41] HITS file was successfully produced:
[2026-01-30 19:01:41] -rw------- 1 boinc boinc 184620624 Jan 30 19:00 shared/HITS.pool.root.1
[2026-01-30 19:01:41]  *** Contents of shared directory: ***
[2026-01-30 19:01:41] total 663048
[2026-01-30 19:01:41] -rw-r--r-- 2 boinc boinc 492287719 Jan 30 16:53 ATLAS.root_0
[2026-01-30 19:01:41] -rw-r--r-- 2 boinc boinc    597754 Jan 30 16:53 input.tar.gz
[2026-01-30 19:01:41] -rw-r--r-- 2 boinc boinc     15845 Jan 30 16:53 start_atlas.sh
[2026-01-30 19:01:41] -rw------- 1 boinc boinc 184620624 Jan 30 19:00 HITS.pool.root.1
[2026-01-30 19:01:41] -rw------- 1 boinc boinc   1423360 Jan 30 19:01 result.tar.gz
19:01:43 (2190955): run_atlas exited; CPU time 14918.064901
19:01:43 (2190955): called boinc_finish(0)

</stderr_txt>
]]>

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