Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:24:41 (572500): wrapper (7.7.26015): starting
12:24:41 (572500): wrapper: running run_atlas (--nthreads 4)
[2026-01-30 12:24:41] Arguments: --nthreads 4
[2026-01-30 12:24:41] Threads: 4
[2026-01-30 12:24:41] Checking for CVMFS
[2026-01-30 12:24:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 12:24:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 12:24:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 12:24:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 12:24:42] 2.9.2.0 53194 2746 95748 155676 2 49 23335581 36864001 0 130560 0 1469897 99.990 73091 12793 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 12:24:42] CVMFS is ok
[2026-01-30 12:24:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 12:24:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 12:24:42] Further information can be found at the LHC@home message board.
[2026-01-30 12:24:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 12:24:42] Checking for apptainer binary...
[2026-01-30 12:24:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 12:24:42] Running /usr/bin/apptainer --version
[2026-01-30 12:24:42] apptainer version 1.4.1-1.1
[2026-01-30 12:24:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 12:24:42] thA334
[2026-01-30 12:24:42] apptainer works
[2026-01-30 12:24:42] Set ATHENA_PROC_NUMBER=4
[2026-01-30 12:24:42] Set ATHENA_CORE_NUMBER=4
[2026-01-30 12:24:42] Starting ATLAS job with PandaID=6992222059
[2026-01-30 12:24:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:43:37 (2821): wrapper (7.7.26015): starting
12:43:37 (2821): wrapper: running run_atlas (--nthreads 4)
[2026-01-30 12:43:37] Arguments: --nthreads 4
[2026-01-30 12:43:37] Threads: 4
[2026-01-30 12:43:37] This job has been restarted, cleaning up previous attempt
[2026-01-30 12:43:37] Checking for CVMFS
[2026-01-30 12:43:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 12:43:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 12:43:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 12:43:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 12:43:40] 2.9.2.0 3018 0 29040 155676 4 1 23340139 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 12:43:40] CVMFS is ok
[2026-01-30 12:43:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 12:43:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 12:43:40] Further information can be found at the LHC@home message board.
[2026-01-30 12:43:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 12:43:40] Checking for apptainer binary...
[2026-01-30 12:43:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 12:43:40] Running /usr/bin/apptainer --version
[2026-01-30 12:43:40] apptainer version 1.4.1-1.1
[2026-01-30 12:43:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 12:43:41] thA334
[2026-01-30 12:43:41] apptainer works
[2026-01-30 12:43:41] Set ATHENA_PROC_NUMBER=4
[2026-01-30 12:43:41] Set ATHENA_CORE_NUMBER=4
[2026-01-30 12:43:41] Starting ATLAS job with PandaID=6992222059
[2026-01-30 12:43:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 13:58:01]  *** The last 200 lines of the pilot log: ***
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | job 6992222059 has completed (purged errors)
[2026-01-30 13:58:01] 2026-01-30 12:57:06,732 | INFO     | overall cleanup function is called
[2026-01-30 13:58:01] 2026-01-30 12:57:07,738 | INFO     | --- collectZombieJob: --- 10, [9618]
[2026-01-30 13:58:01] 2026-01-30 12:57:07,739 | INFO     | zombie collector waiting for pid 9618
[2026-01-30 13:58:01] 2026-01-30 12:57:07,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 13:58:01] 2026-01-30 12:57:07,739 | INFO     | collected zombie processes
[2026-01-30 13:58:01] 2026-01-30 12:57:07,739 | INFO     | will attempt to kill all subprocesses of pid=9618
[2026-01-30 13:58:01] 2026-01-30 12:57:07,782 | INFO     | process IDs to be killed: [9618] (in reverse order)
[2026-01-30 13:58:01] 2026-01-30 12:57:07,813 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 13:58:01] 2026-01-30 12:57:07,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 13:58:01] 2026-01-30 12:57:07,814 | INFO     | did not find any defunct processes belonging to 9618
[2026-01-30 13:58:01] 2026-01-30 12:57:07,816 | INFO     | did not find any defunct processes belonging to 9618
[2026-01-30 13:58:01] 2026-01-30 12:57:07,816 | INFO     | ready for new job
[2026-01-30 13:58:01] 2026-01-30 12:57:07,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 13:58:01] 2026-01-30 12:57:07,816 | INFO     | **************************************
[2026-01-30 13:58:01] 2026-01-30 12:57:07,816 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 13:58:01] 2026-01-30 12:57:07,817 | INFO     | **************************************
[2026-01-30 13:58:01] 2026-01-30 12:57:07,817 | INFO     | 
[2026-01-30 13:58:01] 2026-01-30 12:57:07,817 | INFO     | architecture information:
[2026-01-30 13:58:01] 2026-01-30 12:57:07,817 | INFO     | executing command: cat /etc/os-release
[2026-01-30 13:58:01] 2026-01-30 12:57:07,829 | INFO     | cat /etc/os-release:
[2026-01-30 13:58:01] NAME="CentOS Linux"
[2026-01-30 13:58:01] VERSION="7 (Core)"
[2026-01-30 13:58:01] ID="centos"
[2026-01-30 13:58:01] ID_LIKE="rhel fedora"
[2026-01-30 13:58:01] VERSION_ID="7"
[2026-01-30 13:58:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 13:58:01] ANSI_COLOR="0;31"
[2026-01-30 13:58:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 13:58:01] HOME_URL="https://www.centos.org/"
[2026-01-30 13:58:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 13:58:01] 
[2026-01-30 13:58:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 13:58:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 13:58:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 13:58:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 13:58:01] 
[2026-01-30 13:58:01] 2026-01-30 12:57:07,830 | INFO     | **************************************
[2026-01-30 13:58:01] 2026-01-30 12:57:08,116 | WARNING  | process 9618 can no longer be monitored (due to stat problems) - aborting
[2026-01-30 13:58:01] 2026-01-30 12:57:08,149 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-30 13:58:01] 2026-01-30 12:57:08,188 | INFO     | number of running child processes to parent process 9618: 1
[2026-01-30 13:58:01] 2026-01-30 12:57:08,188 | INFO     | maximum number of monitored processes: 6
[2026-01-30 13:58:01] 2026-01-30 12:57:08,188 | INFO     | aborting job monitoring since job object (job id=6992222059) has expired
[2026-01-30 13:58:01] 2026-01-30 12:57:08,333 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-30 13:58:01] 2026-01-30 12:57:08,347 | INFO     | sufficient remaining disk space (232899215360 B)
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | INFO     | update_server=False
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 13:58:01] 2026-01-30 12:57:08,348 | INFO     | will abort loop
[2026-01-30 13:58:01] 2026-01-30 12:57:08,556 | INFO     | all payload control threads have been joined
[2026-01-30 13:58:01] 2026-01-30 12:57:08,950 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 13:58:01] 2026-01-30 12:57:08,964 | INFO     | all job control threads have been joined
[2026-01-30 13:58:01] 2026-01-30 12:57:09,037 | INFO     | all data control threads have been joined
[2026-01-30 13:58:01] 2026-01-30 12:57:09,353 | INFO     | [job] queue monitor thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:09,353 | INFO     | [job] retrieve thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:09,354 | INFO     | [job] job monitor thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:09,475 | INFO     | [payload] failed_post thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:09,485 | INFO     | [data] copytool_in thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:09,561 | INFO     | [payload] control thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:09,970 | INFO     | [job] control thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,043 | INFO     | [data] control thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,459 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,531 | INFO     | [job] validate thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,753 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,793 | INFO     | [payload] validate_post thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,815 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:10,953 | INFO     | [data] copytool_out thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:11,409 | INFO     | job.realtimelogging is not enabled
[2026-01-30 13:58:01] 2026-01-30 12:57:12,355 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:12,415 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 13:58:01] 2026-01-30 12:57:38,218 | INFO     | PID=7177 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-30 13:58:01] 2026-01-30 12:57:38,218 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 13:58:01] 2026-01-30 12:57:38,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 13:58:01] 2026-01-30 12:57:38,218 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 13:58:01] 2026-01-30 12:57:55,222 | INFO     | [monitor] cgroup control has ended
[2026-01-30 13:58:01] 2026-01-30 12:57:55,882 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349845153600)>', '<ExcThread(monitor, started 140348953175808)>']
[2026-01-30 13:58:01] 2026-01-30 12:57:56,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 13:58:01] 2026-01-30 12:57:56,316 | INFO     | [monitor] control thread has ended
[2026-01-30 13:58:01] 2026-01-30 12:58:00,908 | INFO     | all workflow threads have been joined
[2026-01-30 13:58:01] 2026-01-30 12:58:00,908 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 13:58:01] 2026-01-30 12:58:00,908 | INFO     | traces error code: 0
[2026-01-30 13:58:01] 2026-01-30 12:58:00,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 13:58:01] 2026-01-30 12:58:00,975 [wrapper] ==== pilot stdout END ====
[2026-01-30 13:58:01] 2026-01-30 12:58:00,979 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 13:58:01] 2026-01-30 12:58:00,982 [wrapper] pilotpid: 7177
[2026-01-30 13:58:01] 2026-01-30 12:58:00,986 [wrapper] Pilot exit status: 0
[2026-01-30 13:58:01] 2026-01-30 12:58:00,997 [wrapper] pandaids: 6992222059 6992222059
[2026-01-30 13:58:01] 2026-01-30 12:58:01,018 [wrapper] cleanup supervisor_pilot   14647 7178
[2026-01-30 13:58:01] 2026-01-30 12:58:01,022 [wrapper] Test setup, not cleaning
[2026-01-30 13:58:01] 2026-01-30 12:58:01,025 [wrapper] apfmon messages muted
[2026-01-30 13:58:01] 2026-01-30 12:58:01,028 [wrapper] ==== wrapper stdout END ====
[2026-01-30 13:58:01] 2026-01-30 12:58:01,032 [wrapper] ==== wrapper stderr END ====
[2026-01-30 13:58:01]  *** Error codes and diagnostics ***
[2026-01-30 13:58:01]     "exeErrorCode": 0,
[2026-01-30 13:58:01]     "exeErrorDiag": "",
[2026-01-30 13:58:01]     "pilotErrorCode": 0,
[2026-01-30 13:58:01]     "pilotErrorDiag": "",
[2026-01-30 13:58:01]  *** Listing of results directory ***
[2026-01-30 13:58:01] total 1152960
[2026-01-30 13:58:01] drwx------ 5 boinc boinc      4096 Jan 14 11:00 pilot3
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc    584422 Jan 29 20:28 pilot3.tar.gz
[2026-01-30 13:58:01] -rwx------ 1 boinc boinc     36322 Jan 29 20:37 runpilot2-wrapper.sh
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc      5111 Jan 29 20:38 queuedata.json
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc       100 Jan 30 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 13:58:01] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 12:24 run_atlas
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc       105 Jan 30 12:24 job.xml
[2026-01-30 13:58:01] -rw-r--r-- 3 boinc boinc 493845597 Jan 30 12:24 EVNT.48317869._000246.pool.root.1
[2026-01-30 13:58:01] -rw-r--r-- 3 boinc boinc 493845597 Jan 30 12:24 ATLAS.root_0
[2026-01-30 13:58:01] -rw-r--r-- 2 boinc boinc    597758 Jan 30 12:24 input.tar.gz
[2026-01-30 13:58:01] -rw-r--r-- 2 boinc boinc     15845 Jan 30 12:24 start_atlas.sh
[2026-01-30 13:58:01] drwxrwx--x 2 boinc boinc      4096 Jan 30 12:24 shared
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc         0 Jan 30 12:24 boinc_setup_complete
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc         0 Jan 30 12:24 boinc_lockfile
[2026-01-30 13:58:01] -rw------- 1 boinc boinc   1511668 Jan 30 12:24 agis_ddmendpoints.agis.ALL.json
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc      2519 Jan 30 12:43 pandaJob.out
[2026-01-30 13:58:01] -rw------- 1 boinc boinc   1010509 Jan 30 12:43 agis_schedconf.cvmfs.json
[2026-01-30 13:58:01] -rw------- 1 boinc boinc       427 Jan 30 12:43 workernode_map.json
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc      6375 Jan 30 13:25 init_data.xml
[2026-01-30 13:58:01] -rw------- 1 boinc boinc 187132875 Jan 30 13:56 HITS.48317872._013411.pool.root.1
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc       530 Jan 30 13:56 boinc_task_state.xml
[2026-01-30 13:58:01] -rw------- 1 boinc boinc      1033 Jan 30 13:57 memory_monitor_summary.json
[2026-01-30 13:58:01] -rw------- 1 boinc boinc    290080 Jan 30 13:57 log.48317872._013411.job.log.tgz.1
[2026-01-30 13:58:01] -rw------- 1 boinc boinc      6344 Jan 30 13:57 heartbeat.json
[2026-01-30 13:58:01] -rw------- 1 boinc boinc        97 Jan 30 13:57 pilot_heartbeat.json
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc      8192 Jan 30 13:57 boinc_mmap_file
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc        27 Jan 30 13:57 wrapper_checkpoint.txt
[2026-01-30 13:58:01] -rw------- 1 boinc boinc      5335 Jan 30 13:58 pilotlog.txt
[2026-01-30 13:58:01] -rw------- 1 boinc boinc    646246 Jan 30 13:58 log.48317872._013411.job.log.1
[2026-01-30 13:58:01] -rw------- 1 boinc boinc       357 Jan 30 13:58 output.list
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc       620 Jan 30 13:58 runtime_log
[2026-01-30 13:58:01] -rw------- 1 boinc boinc    952320 Jan 30 13:58 result.tar.gz
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc      8981 Jan 30 13:58 runtime_log.err
[2026-01-30 13:58:01] -rw------- 1 boinc boinc       787 Jan 30 13:58 d62LDmm0m58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmVNJKDmOWPWim.diag
[2026-01-30 13:58:01] -rw-r--r-- 1 boinc boinc     14114 Jan 30 13:58 stderr.txt
[2026-01-30 13:58:01] HITS file was successfully produced:
[2026-01-30 13:58:01] -rw------- 1 boinc boinc 187132875 Jan 30 13:56 shared/HITS.pool.root.1
[2026-01-30 13:58:01]  *** Contents of shared directory: ***
[2026-01-30 13:58:01] total 666560
[2026-01-30 13:58:01] -rw-r--r-- 3 boinc boinc 493845597 Jan 30 12:24 ATLAS.root_0
[2026-01-30 13:58:01] -rw-r--r-- 2 boinc boinc    597758 Jan 30 12:24 input.tar.gz
[2026-01-30 13:58:01] -rw-r--r-- 2 boinc boinc     15845 Jan 30 12:24 start_atlas.sh
[2026-01-30 13:58:01] -rw------- 1 boinc boinc 187132875 Jan 30 13:56 HITS.pool.root.1
[2026-01-30 13:58:01] -rw------- 1 boinc boinc    952320 Jan 30 13:58 result.tar.gz
13:58:02 (2821): run_atlas exited; CPU time 16476.205041
13:58:02 (2821): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN