Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:34:50 (3944053): wrapper (7.7.26015): starting
12:34:50 (3944053): wrapper: running run_atlas (--nthreads 4)
[2026-01-30 12:34:50] Arguments: --nthreads 4
[2026-01-30 12:34:50] Threads: 4
[2026-01-30 12:34:50] Checking for CVMFS
[2026-01-30 12:34:50] No cvmfs_config command found, will try listing directly
[2026-01-30 12:34:50] CVMFS is ok
[2026-01-30 12:34:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 12:34:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 12:34:50] Further information can be found at the LHC@home message board.
[2026-01-30 12:34:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 12:34:50] Checking for apptainer binary...
[2026-01-30 12:34:50] which: no apptainer in ((null))
[2026-01-30 12:34:50] apptainer is not installed, using version from CVMFS
[2026-01-30 12:34:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 12:34:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-01-30 12:34:50] apptainer works
[2026-01-30 12:34:50] Set ATHENA_PROC_NUMBER=4
[2026-01-30 12:34:50] Set ATHENA_CORE_NUMBER=4
[2026-01-30 12:34:50] Starting ATLAS job with PandaID=6992194987
[2026-01-30 12:34:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 15:54:40]  *** The last 200 lines of the pilot log: ***
[2026-01-30 15:54:40] 2026-01-30 14:46:54,705 | INFO     | using path: /scratch/boinc/var/slot92/slots/0/PanDA_Pilot-6992194987/memory_monitor_summary.json (trf name=prmon)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,705 | INFO     | extracted standard info from prmon json
[2026-01-30 15:54:40] 2026-01-30 14:46:54,705 | INFO     | extracted standard memory fields from prmon json
[2026-01-30 15:54:40] 2026-01-30 14:46:54,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-30 15:54:40] 2026-01-30 14:46:54,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-30 15:54:40] 2026-01-30 14:46:54,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-30 15:54:40] 2026-01-30 14:46:54,708 | INFO     | fitting pss+swap vs Time
[2026-01-30 15:54:40] 2026-01-30 14:46:54,709 | INFO     | sum of square deviations: 1976925093.5597904
[2026-01-30 15:54:40] 2026-01-30 14:46:54,709 | INFO     | sum of deviations: -5519575215.16305
[2026-01-30 15:54:40] 2026-01-30 14:46:54,710 | INFO     | mean x: 1769778708.451087
[2026-01-30 15:54:40] 2026-01-30 14:46:54,710 | INFO     | mean y: 2302326.315217391
[2026-01-30 15:54:40] 2026-01-30 14:46:54,710 | INFO     | intersect: 4943524797.167755
[2026-01-30 15:54:40] 2026-01-30 14:46:54,710 | INFO     | chi2: 3.150476046437749
[2026-01-30 15:54:40] 2026-01-30 14:46:54,710 | INFO     | sum of square deviations: 1820159125.3519576
[2026-01-30 15:54:40] 2026-01-30 14:46:54,711 | INFO     | sum of deviations: 17069512934.743011
[2026-01-30 15:54:40] 2026-01-30 14:46:54,711 | INFO     | mean x: 1769778554.206704
[2026-01-30 15:54:40] 2026-01-30 14:46:54,711 | INFO     | mean y: 2324113.5474860333
[2026-01-30 15:54:40] 2026-01-30 14:46:54,711 | INFO     | intersect: -16594718146.052023
[2026-01-30 15:54:40] 2026-01-30 14:46:54,711 | INFO     | chi2: 1.492157430252781
[2026-01-30 15:54:40] 2026-01-30 14:46:54,712 | INFO     | current chi2=1.492157430252781 (change=52.63708061072335 %)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,712 | INFO     | sum of square deviations: 1673267200.6666682
[2026-01-30 15:54:40] 2026-01-30 14:46:54,712 | INFO     | sum of deviations: 15755793644.000013
[2026-01-30 15:54:40] 2026-01-30 14:46:54,712 | INFO     | mean x: 1769778400.6666667
[2026-01-30 15:54:40] 2026-01-30 14:46:54,712 | INFO     | mean y: 2322748.706896552
[2026-01-30 15:54:40] 2026-01-30 14:46:54,713 | INFO     | intersect: -16662238216.45315
[2026-01-30 15:54:40] 2026-01-30 14:46:54,713 | INFO     | chi2: 1.4919275734360835
[2026-01-30 15:54:40] 2026-01-30 14:46:54,713 | INFO     | current chi2=1.4919275734360835 (change=0.015404327454809205 %)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,713 | INFO     | right removable region: 173
[2026-01-30 15:54:40] 2026-01-30 14:46:54,713 | INFO     | sum of square deviations: 1820084358.659215
[2026-01-30 15:54:40] 2026-01-30 14:46:54,714 | INFO     | sum of deviations: -30858938945.452515
[2026-01-30 15:54:40] 2026-01-30 14:46:54,714 | INFO     | mean x: 1769778862.73743
[2026-01-30 15:54:40] 2026-01-30 14:46:54,714 | INFO     | mean y: 2326918.7988826814
[2026-01-30 15:54:40] 2026-01-30 14:46:54,714 | INFO     | intersect: 30008352525.435257
[2026-01-30 15:54:40] 2026-01-30 14:46:54,714 | INFO     | chi2: 1.724922335823535
[2026-01-30 15:54:40] 2026-01-30 14:46:54,714 | INFO     | current chi2=1.724922335823535 (change=45.24883508402138 %)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,715 | INFO     | sum of square deviations: 1671568153.2183855
[2026-01-30 15:54:40] 2026-01-30 14:46:54,715 | INFO     | sum of deviations: -29342385101.068966
[2026-01-30 15:54:40] 2026-01-30 14:46:54,715 | INFO     | mean x: 1769779017.1264367
[2026-01-30 15:54:40] 2026-01-30 14:46:54,715 | INFO     | mean y: 2325337.775862069
[2026-01-30 15:54:40] 2026-01-30 14:46:54,715 | INFO     | intersect: 31068685009.878803
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | chi2: 1.7266098670445182
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | current chi2=1.7266098670445182 (change=-0.09783230154402939 %)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | left removable region: 20
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | sum of square deviations: 1137031163.581695
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | sum of deviations: -6183734416.941173
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | mean x: 1769778987.9477124
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | mean y: 2346166.882352941
[2026-01-30 15:54:40] 2026-01-30 14:46:54,716 | INFO     | intersect: 9627274303.13328
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | chi2: 0.011455647274215126
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | current memory leak: -5.44 B/s (using 153 data points, chi2=0.01)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | could have reported an average CPU frequency of 2782 MHz (10 samples)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | ..............................
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . Timing measurements:
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . get job = 0 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . initial setup = 8 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . payload setup = 9 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . stage-in = 0 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . payload execution = 11318 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . stage-out = 5 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | . log creation = 0 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,717 | INFO     | ..............................
[2026-01-30 15:54:40] 2026-01-30 14:46:54,790 | INFO     | 
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | job summary report
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | --------------------------------------------------
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | PanDA job id: 6992194987
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | task id: 48317971
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | errors: (none)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | pilot state: finished 
[2026-01-30 15:54:40] 2026-01-30 14:46:54,791 | INFO     | transexitcode: 0
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | exeerrorcode: 0
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | exeerrordiag: 
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | exitcode: 0
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | exitmsg: OK
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | cpuconsumptiontime: 37279 s
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | nevents: 400
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | neventsw: 0
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | pid: 3963555
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | pgrp: 3963555
[2026-01-30 15:54:40] 2026-01-30 14:46:54,792 | INFO     | corecount: 4
[2026-01-30 15:54:40] 2026-01-30 14:46:54,793 | INFO     | event service: False
[2026-01-30 15:54:40] 2026-01-30 14:46:54,793 | INFO     | sizes: {0: 2278007, 1: 2278269, 11: 2278297, 11364: 2302483, 11365: 2302482, 11370: 2311558, 11372: 2311742, 11373: 2311936}
[2026-01-30 15:54:40] 2026-01-30 14:46:54,793 | INFO     | --------------------------------------------------
[2026-01-30 15:54:40] 2026-01-30 14:46:54,793 | INFO     | 
[2026-01-30 15:54:40] 2026-01-30 14:46:54,793 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/0
[2026-01-30 15:54:40] 2026-01-30 14:46:54,824 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,824 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,824 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,825 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 15:54:40] 2026-01-30 14:46:54,826 | INFO     | job 6992194987 has completed (purged errors)
[2026-01-30 15:54:40] 2026-01-30 14:46:54,827 | INFO     | overall cleanup function is called
[2026-01-30 15:54:40] 2026-01-30 14:46:54,848 | INFO     | PID=3953440 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-30 15:54:40] 2026-01-30 14:46:54,849 | INFO     | .. there are 5 such processes running
[2026-01-30 15:54:40] 2026-01-30 14:46:55,838 | INFO     | --- collectZombieJob: --- 10, [3963555]
[2026-01-30 15:54:40] 2026-01-30 14:46:55,838 | INFO     | zombie collector waiting for pid 3963555
[2026-01-30 15:54:40] 2026-01-30 14:46:55,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 15:54:40] 2026-01-30 14:46:55,838 | INFO     | collected zombie processes
[2026-01-30 15:54:40] 2026-01-30 14:46:55,838 | INFO     | will attempt to kill all subprocesses of pid=3963555
[2026-01-30 15:54:40] 2026-01-30 14:46:56,583 | INFO     | process IDs to be killed: [3963555] (in reverse order)
[2026-01-30 15:54:40] 2026-01-30 14:46:56,810 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 15:54:40] 2026-01-30 14:46:56,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 15:54:40] 2026-01-30 14:46:56,844 | INFO     | did not find any defunct processes belonging to 3963555
[2026-01-30 15:54:40] 2026-01-30 14:46:56,875 | INFO     | did not find any defunct processes belonging to 3963555
[2026-01-30 15:54:40] 2026-01-30 14:46:56,875 | INFO     | ready for new job
[2026-01-30 15:54:40] 2026-01-30 14:46:56,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 15:54:40] 2026-01-30 14:47:10,069 | INFO     | **************************************
[2026-01-30 15:54:40] 2026-01-30 14:47:10,070 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 15:54:40] 2026-01-30 14:47:10,070 | INFO     | **************************************
[2026-01-30 15:54:40] 2026-01-30 14:47:10,070 | INFO     | 
[2026-01-30 15:54:40] 2026-01-30 14:47:10,078 | INFO     | architecture information:
[2026-01-30 15:54:40] 2026-01-30 14:47:10,079 | INFO     | executing command: cat /etc/os-release
[2026-01-30 15:54:40] 2026-01-30 14:47:10,101 | INFO     | cat /etc/os-release:
[2026-01-30 15:54:40] NAME="CentOS Linux"
[2026-01-30 15:54:40] VERSION="7 (Core)"
[2026-01-30 15:54:40] ID="centos"
[2026-01-30 15:54:40] ID_LIKE="rhel fedora"
[2026-01-30 15:54:40] VERSION_ID="7"
[2026-01-30 15:54:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 15:54:40] ANSI_COLOR="0;31"
[2026-01-30 15:54:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 15:54:40] HOME_URL="https://www.centos.org/"
[2026-01-30 15:54:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 15:54:40] 
[2026-01-30 15:54:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 15:54:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 15:54:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 15:54:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 15:54:40] 
[2026-01-30 15:54:40] 2026-01-30 14:47:10,101 | INFO     | **************************************
[2026-01-30 15:54:40] 2026-01-30 14:47:10,604 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2026-01-30 15:54:40] 2026-01-30 14:47:10,621 | INFO     | sufficient remaining disk space (3284599308288 B)
[2026-01-30 15:54:40] 2026-01-30 14:47:10,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 15:54:40] 2026-01-30 14:47:10,622 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 15:54:40] 2026-01-30 14:47:10,622 | INFO     | update_server=False
[2026-01-30 15:54:40] 2026-01-30 14:47:10,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 15:54:40] 2026-01-30 14:47:10,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 15:54:40] 2026-01-30 14:47:10,648 | INFO     | all data control threads have been joined
[2026-01-30 15:54:40] 2026-01-30 14:47:10,766 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-30 15:54:40] 2026-01-30 14:47:10,766 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-30 15:54:40] 2026-01-30 14:47:10,766 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 15:54:40] 2026-01-30 14:47:10,767 | INFO     | will abort loop
[2026-01-30 15:54:40] 2026-01-30 14:47:11,627 | INFO     | [job] retrieve thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:11,652 | INFO     | all payload control threads have been joined
[2026-01-30 15:54:40] 2026-01-30 14:47:11,654 | INFO     | [data] control thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:11,704 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:11,772 | INFO     | [job] job monitor thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:11,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 15:54:40] 2026-01-30 14:47:12,072 | INFO     | all job control threads have been joined
[2026-01-30 15:54:40] 2026-01-30 14:47:12,116 | INFO     | [job] validate thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,165 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,484 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,504 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,552 | INFO     | [data] copytool_in thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,627 | INFO     | [data] copytool_out thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,657 | INFO     | [payload] control thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:12,820 | INFO     | [job] queue monitor thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:13,077 | INFO     | [job] control thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:13,128 | INFO     | [payload] failed_post thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:13,129 | INFO     | [payload] validate_post thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:13,656 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 15:54:40] 2026-01-30 14:47:17,662 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 15:54:40] 2026-01-30 14:47:28,236 | INFO     | PID=3953440 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-30 15:54:40] 2026-01-30 14:47:28,236 | INFO     | .. there are 5 such processes running
[2026-01-30 15:54:40] 2026-01-30 14:47:28,520 | INFO     | [monitor] cgroup control has ended
[2026-01-30 15:54:40] 2026-01-30 14:47:28,864 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 15:54:40] 2026-01-30 14:47:28,864 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 15:54:40] 2026-01-30 14:47:28,864 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 15:54:40] 2026-01-30 14:47:29,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23425703032640)>', '<ExcThread(monitor, started 23425459685120)>']
[2026-01-30 15:54:40] 2026-01-30 14:47:29,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 15:54:40] 2026-01-30 14:47:29,869 | INFO     | [monitor] control thread has ended
[2026-01-30 15:54:40] 2026-01-30 14:47:34,704 | INFO     | all workflow threads have been joined
[2026-01-30 15:54:40] 2026-01-30 14:47:48,738 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 15:54:40] 2026-01-30 14:47:48,738 | INFO     | traces error code: 0
[2026-01-30 15:54:40] 2026-01-30 14:47:48,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 15:54:40] 2026-01-30 14:48:32,703 [wrapper] ==== pilot stdout END ====
[2026-01-30 15:54:40] 2026-01-30 14:48:32,709 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 15:54:40] 2026-01-30 14:48:32,712 [wrapper] pilotpid: 3953440
[2026-01-30 15:54:40] 2026-01-30 14:48:32,715 [wrapper] Pilot exit status: 0
[2026-01-30 15:54:40] 2026-01-30 14:48:32,725 [wrapper] pandaids: 6992194987
[2026-01-30 15:54:40] 2026-01-30 14:48:32,856 [wrapper] cleanup supervisor_pilot 4135906 3953441
[2026-01-30 15:54:40] 2026-01-30 14:48:32,859 [wrapper] Test setup, not cleaning
[2026-01-30 15:54:40] 2026-01-30 14:48:32,862 [wrapper] apfmon messages muted
[2026-01-30 15:54:40] 2026-01-30 14:48:32,864 [wrapper] ==== wrapper stdout END ====
[2026-01-30 15:54:40] 2026-01-30 14:48:32,866 [wrapper] ==== wrapper stderr END ====
[2026-01-30 15:54:40]  *** Error codes and diagnostics ***
[2026-01-30 15:54:40]     "exeErrorCode": 0,
[2026-01-30 15:54:40]     "exeErrorDiag": "",
[2026-01-30 15:54:40]     "pilotErrorCode": 0,
[2026-01-30 15:54:40]     "pilotErrorDiag": "",
[2026-01-30 15:54:40]  *** Listing of results directory ***
[2026-01-30 15:54:40] total 718044
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc    584422 Jan 29 20:28 pilot3.tar.gz
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc      5111 Jan 29 20:36 queuedata.json
[2026-01-30 15:54:40] -rwx------ 1 boinc boinc     36322 Jan 29 20:36 runpilot2-wrapper.sh
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc       100 Jan 30 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 15:54:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 11:33 run_atlas
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc       105 Jan 30 11:33 job.xml
[2026-01-30 15:54:40] -rw-r--r-- 2 boinc boinc 530551430 Jan 30 12:34 EVNT.48317969._000083.pool.root.1
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc      6689 Jan 30 12:34 init_data.xml
[2026-01-30 15:54:40] -rw-r--r-- 2 boinc boinc     15845 Jan 30 12:34 start_atlas.sh
[2026-01-30 15:54:40] drwxrwx--x 2 boinc boinc      4096 Jan 30 12:34 shared
[2026-01-30 15:54:40] -rw-r--r-- 2 boinc boinc    597764 Jan 30 12:34 input.tar.gz
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc         0 Jan 30 12:34 boinc_lockfile
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc      2516 Jan 30 12:34 pandaJob.out
[2026-01-30 15:54:40] -rw------- 1 boinc boinc   1010509 Jan 30 12:37 agis_schedconf.cvmfs.json
[2026-01-30 15:54:40] -rw------- 1 boinc boinc       443 Jan 30 12:37 workernode_map.json
[2026-01-30 15:54:40] drwx------ 5 boinc boinc      4096 Jan 30 12:37 pilot3
[2026-01-30 15:54:40] -rw------- 1 boinc boinc 197617251 Jan 30 15:40 HITS.48317971._004641.pool.root.1
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc       529 Jan 30 15:45 boinc_task_state.xml
[2026-01-30 15:54:40] -rw------- 1 boinc boinc      1035 Jan 30 15:46 memory_monitor_summary.json
[2026-01-30 15:54:40] -rw------- 1 boinc boinc   1511668 Jan 30 15:46 agis_ddmendpoints.agis.ALL.json
[2026-01-30 15:54:40] -rw------- 1 boinc boinc    350238 Jan 30 15:46 log.48317971._004641.job.log.tgz.1
[2026-01-30 15:54:40] -rw------- 1 boinc boinc      5440 Jan 30 15:46 heartbeat.json
[2026-01-30 15:54:40] -rw------- 1 boinc boinc        96 Jan 30 15:47 pilot_heartbeat.json
[2026-01-30 15:54:40] -rw------- 1 boinc boinc      5016 Jan 30 15:47 pilotlog.txt
[2026-01-30 15:54:40] -rw------- 1 boinc boinc   1234454 Jan 30 15:48 log.48317971._004641.job.log.1
[2026-01-30 15:54:40] -rw------- 1 boinc boinc       357 Jan 30 15:48 output.list
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc      8192 Jan 30 15:53 boinc_mmap_file
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc        26 Jan 30 15:53 wrapper_checkpoint.txt
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc       620 Jan 30 15:54 runtime_log
[2026-01-30 15:54:40] -rw------- 1 boinc boinc   1597440 Jan 30 15:54 result.tar.gz
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc      9205 Jan 30 15:54 runtime_log.err
[2026-01-30 15:54:40] -rw------- 1 boinc boinc       667 Jan 30 15:54 Y39NDmozm58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbKJKDmoGidqn.diag
[2026-01-30 15:54:40] -rw-r--r-- 1 boinc boinc     21043 Jan 30 15:54 stderr.txt
[2026-01-30 15:54:40] HITS file was successfully produced:
[2026-01-30 15:54:40] -rw------- 1 boinc boinc 197617251 Jan 30 15:40 shared/HITS.pool.root.1
[2026-01-30 15:54:40]  *** Contents of shared directory: ***
[2026-01-30 15:54:40] total 713276
[2026-01-30 15:54:40] -rw-r--r-- 2 boinc boinc 530551430 Jan 30 12:34 ATLAS.root_0
[2026-01-30 15:54:40] -rw-r--r-- 2 boinc boinc     15845 Jan 30 12:34 start_atlas.sh
[2026-01-30 15:54:40] -rw-r--r-- 2 boinc boinc    597764 Jan 30 12:34 input.tar.gz
[2026-01-30 15:54:40] -rw------- 1 boinc boinc 197617251 Jan 30 15:40 HITS.pool.root.1
[2026-01-30 15:54:40] -rw------- 1 boinc boinc   1597440 Jan 30 15:54 result.tar.gz
15:54:41 (3944053): run_atlas exited; CPU time 37815.773791
15:54:42 (3944053): called boinc_finish(0)

</stderr_txt>
]]>

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