Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:03:18 (1016581): wrapper (7.7.26015): starting
18:03:18 (1016581): wrapper: running run_atlas (--nthreads 8)
[2026-01-29 18:03:18] Arguments: --nthreads 8
[2026-01-29 18:03:18] Threads: 8
[2026-01-29 18:03:18] Checking for CVMFS
[2026-01-29 18:03:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 18:03:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 18:03:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 18:03:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 18:03:20] 2.13.3.0 16090 122797 443848 155656 1 1015 24160445 32935936 38075 16776704 0 1263485693 99.559 1436672204 52650 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-29 18:03:20] CVMFS is ok
[2026-01-29 18:03:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 18:03:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 18:03:20] Further information can be found at the LHC@home message board.
[2026-01-29 18:03:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 18:03:20] Checking for apptainer binary...
[2026-01-29 18:03:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 18:03:20] Running /usr/bin/apptainer --version
[2026-01-29 18:03:20] apptainer version 1.4.5-2.el9
[2026-01-29 18:03:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 18:03:20] c7-9-15.aglt2.org
[2026-01-29 18:03:20] apptainer works
[2026-01-29 18:03:21] Set ATHENA_PROC_NUMBER=8
[2026-01-29 18:03:21] Set ATHENA_CORE_NUMBER=8
[2026-01-29 18:03:21] Starting ATLAS job with PandaID=6978120604
[2026-01-29 18:03:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 20:50:41]  *** The last 200 lines of the pilot log: ***
[2026-01-29 20:50:41] 2026-01-30 01:49:37,301 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/5/workernode_map.json
[2026-01-29 20:50:41] 2026-01-30 01:49:37,301 | INFO     | this job has now completed (state=finished)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,301 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,301 | INFO     | log transfer has been attempted: DONE
[2026-01-29 20:50:41] 2026-01-30 01:49:37,301 | INFO     | job 6978120604 has finished - writing final server update
[2026-01-29 20:50:41] 2026-01-30 01:49:37,302 | INFO     | total number of processed events: 400 (read)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,373 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6978120604/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,373 | INFO     | extracted standard info from prmon json
[2026-01-29 20:50:41] 2026-01-30 01:49:37,373 | INFO     | extracted standard memory fields from prmon json
[2026-01-29 20:50:41] 2026-01-30 01:49:37,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-29 20:50:41] 2026-01-30 01:49:37,374 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-29 20:50:41] 2026-01-30 01:49:37,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-29 20:50:41] 2026-01-30 01:49:37,375 | INFO     | fitting pss+swap vs Time
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | sum of square deviations: 1294014111.7763932
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | sum of deviations: 60222855754.335396
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | mean x: 1769732884.037267
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | mean y: 2483971.944099379
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | intersect: -82360117199.9797
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | chi2: 4.742811373494714
[2026-01-29 20:50:41] 2026-01-30 01:49:37,376 | INFO     | sum of square deviations: 1177157936.7692292
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | sum of deviations: 69009791355.38461
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | mean x: 1769732731.5384614
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | mean y: 2495072.8525641025
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | intersect: -103746443572.92776
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | chi2: 3.9854811026536936
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | current chi2=3.9854811026536936 (change=15.967961008809544 %)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | right removable region: 155
[2026-01-29 20:50:41] 2026-01-30 01:49:37,377 | INFO     | sum of square deviations: 1177154276.7692292
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | sum of deviations: 9556057913.692312
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | mean x: 1769733036.5384614
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | mean y: 2549951.467948718
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | intersect: -14364021807.801527
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | chi2: 1.0226698337796878
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | current chi2=1.0226698337796878 (change=78.43747614558538 %)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,378 | INFO     | sum of square deviations: 1067550391.7615918
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | sum of deviations: -2685546024.827815
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | mean x: 1769733189.039735
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | mean y: 2566912.304635762
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | intersect: 4454534676.551308
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | chi2: 0.8237082953185139
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | current chi2=0.8237082953185139 (change=19.455109742098436 %)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | left removable region: 20
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | sum of square deviations: 762873447.7333311
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | sum of deviations: 3345163398.8222227
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | mean x: 1769733311.0444446
[2026-01-29 20:50:41] 2026-01-30 01:49:37,379 | INFO     | mean y: 2588151.362962963
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | intersect: -7757607350.750964
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | chi2: 0.0011633398632154251
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | current memory leak: 4.38 B/s (using 135 data points, chi2=0.00)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | could have reported an average CPU frequency of 3797 MHz (9 samples)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | ..............................
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . Timing measurements:
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . get job = 0 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . initial setup = 45 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . payload setup = 42 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . stage-in = 0 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . payload execution = 9794 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . stage-out = 1 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | . log creation = 0 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,380 | INFO     | ..............................
[2026-01-29 20:50:41] 2026-01-30 01:49:37,807 | INFO     | 
[2026-01-29 20:50:41] 2026-01-30 01:49:37,807 | INFO     | job summary report
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | --------------------------------------------------
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | PanDA job id: 6978120604
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | task id: 48313408
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | errors: (none)
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | pilot state: finished 
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | transexitcode: 0
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | exeerrorcode: 0
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | exeerrordiag: 
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | exitcode: 0
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | exitmsg: OK
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | cpuconsumptiontime: 36586 s
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | nevents: 400
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | neventsw: 0
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | pid: 1051185
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | pgrp: 1051185
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | corecount: 8
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | event service: False
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | sizes: {0: 2277985, 1: 2278446, 12: 2278446, 9840: 2307107, 9841: 2307106, 9844: 2316160, 9845: 2316344, 9847: 2316602}
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | --------------------------------------------------
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | 
[2026-01-29 20:50:41] 2026-01-30 01:49:37,808 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-29 20:50:41] 2026-01-30 01:49:38,002 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,027 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 20:50:41] 2026-01-30 01:49:38,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,027 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 20:50:41] 2026-01-30 01:49:38,027 | INFO     | job 6978120604 has completed (purged errors)
[2026-01-29 20:50:41] 2026-01-30 01:49:38,027 | INFO     | overall cleanup function is called
[2026-01-29 20:50:41] 2026-01-30 01:49:38,202 | INFO     | number of running child processes to parent process 1051185: 1
[2026-01-29 20:50:41] 2026-01-30 01:49:38,203 | INFO     | maximum number of monitored processes: 6
[2026-01-29 20:50:41] 2026-01-30 01:49:38,203 | INFO     | aborting job monitoring since job object (job id=6978120604) has expired
[2026-01-29 20:50:41] 2026-01-30 01:49:39,047 | INFO     | --- collectZombieJob: --- 10, [1051185]
[2026-01-29 20:50:41] 2026-01-30 01:49:39,047 | INFO     | zombie collector waiting for pid 1051185
[2026-01-29 20:50:41] 2026-01-30 01:49:39,048 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 20:50:41] 2026-01-30 01:49:39,048 | INFO     | collected zombie processes
[2026-01-29 20:50:41] 2026-01-30 01:49:39,048 | INFO     | will attempt to kill all subprocesses of pid=1051185
[2026-01-29 20:50:41] 2026-01-30 01:49:39,057 | INFO     | PID=1028411 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-29 20:50:41] 2026-01-30 01:49:39,058 | INFO     | .. there are 46 such processes running
[2026-01-29 20:50:41] 2026-01-30 01:49:40,936 | INFO     | process IDs to be killed: [1051185] (in reverse order)
[2026-01-29 20:50:41] 2026-01-30 01:49:41,148 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 20:50:41] 2026-01-30 01:49:41,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 20:50:41] 2026-01-30 01:49:41,187 | INFO     | did not find any defunct processes belonging to 1051185
[2026-01-29 20:50:41] 2026-01-30 01:49:41,249 | INFO     | did not find any defunct processes belonging to 1051185
[2026-01-29 20:50:41] 2026-01-30 01:49:41,249 | INFO     | ready for new job
[2026-01-29 20:50:41] 2026-01-30 01:49:41,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 20:50:41] 2026-01-30 01:49:41,251 | INFO     | **************************************
[2026-01-29 20:50:41] 2026-01-30 01:49:41,251 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 20:50:41] 2026-01-30 01:49:41,251 | INFO     | **************************************
[2026-01-29 20:50:41] 2026-01-30 01:49:41,251 | INFO     | 
[2026-01-29 20:50:41] 2026-01-30 01:49:41,255 | INFO     | architecture information:
[2026-01-29 20:50:41] 2026-01-30 01:49:41,255 | INFO     | executing command: cat /etc/os-release
[2026-01-29 20:50:41] 2026-01-30 01:49:41,305 | INFO     | cat /etc/os-release:
[2026-01-29 20:50:41] NAME="CentOS Linux"
[2026-01-29 20:50:41] VERSION="7 (Core)"
[2026-01-29 20:50:41] ID="centos"
[2026-01-29 20:50:41] ID_LIKE="rhel fedora"
[2026-01-29 20:50:41] VERSION_ID="7"
[2026-01-29 20:50:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 20:50:41] ANSI_COLOR="0;31"
[2026-01-29 20:50:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 20:50:41] HOME_URL="https://www.centos.org/"
[2026-01-29 20:50:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 20:50:41] 
[2026-01-29 20:50:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 20:50:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 20:50:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 20:50:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 20:50:41] 
[2026-01-29 20:50:41] 2026-01-30 01:49:41,306 | INFO     | **************************************
[2026-01-29 20:50:41] 2026-01-30 01:49:41,809 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | INFO     | sufficient remaining disk space (68697456640 B)
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | INFO     | update_server=False
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 20:50:41] 2026-01-30 01:49:41,899 | INFO     | aborting loop
[2026-01-29 20:50:41] 2026-01-30 01:49:41,994 | INFO     | all data control threads have been joined
[2026-01-29 20:50:41] 2026-01-30 01:49:42,044 | INFO     | all job control threads have been joined
[2026-01-29 20:50:41] 2026-01-30 01:49:42,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 20:50:41] 2026-01-30 01:49:42,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 20:50:41] 2026-01-30 01:49:42,905 | INFO     | [job] retrieve thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:42,906 | INFO     | [job] job monitor thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,000 | INFO     | [data] control thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,050 | INFO     | [job] control thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,098 | INFO     | all payload control threads have been joined
[2026-01-29 20:50:41] 2026-01-30 01:49:43,272 | INFO     | [payload] validate_post thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,516 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,517 | INFO     | [data] copytool_in thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,517 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,571 | INFO     | [job] queue monitor thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,688 | INFO     | [payload] failed_post thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:43,900 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:44,069 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:44,104 | INFO     | [payload] control thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:44,352 | INFO     | [data] copytool_out thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:44,387 | INFO     | [job] validate thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:49:45,382 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 20:50:41] 2026-01-30 01:49:49,392 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 20:50:41] 2026-01-30 01:50:13,005 | INFO     | PID=1028411 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 20:50:41] 2026-01-30 01:50:13,005 | INFO     | .. there are 47 such processes running
[2026-01-29 20:50:41] 2026-01-30 01:50:13,005 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 20:50:41] 2026-01-30 01:50:13,011 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 20:50:41] 2026-01-30 01:50:13,011 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 20:50:41] 2026-01-30 01:50:34,128 | INFO     | [monitor] cgroup control has ended
[2026-01-29 20:50:41] 2026-01-30 01:50:35,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480759224128)>', '<ExcThread(monitor, started 140479966463744)>']
[2026-01-29 20:50:41] 2026-01-30 01:50:36,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 20:50:41] 2026-01-30 01:50:36,174 | INFO     | [monitor] control thread has ended
[2026-01-29 20:50:41] 2026-01-30 01:50:40,435 | INFO     | all workflow threads have been joined
[2026-01-29 20:50:41] 2026-01-30 01:50:40,435 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 20:50:41] 2026-01-30 01:50:40,436 | INFO     | traces error code: 0
[2026-01-29 20:50:41] 2026-01-30 01:50:40,436 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 20:50:41] 2026-01-30 01:50:40,665 [wrapper] ==== pilot stdout END ====
[2026-01-29 20:50:41] 2026-01-30 01:50:40,690 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 20:50:41] 2026-01-30 01:50:40,735 [wrapper] pilotpid: 1028411
[2026-01-29 20:50:41] 2026-01-30 01:50:40,773 [wrapper] Pilot exit status: 0
[2026-01-29 20:50:41] 2026-01-30 01:50:40,876 [wrapper] pandaids: 6978120604
[2026-01-29 20:50:41] 2026-01-30 01:50:41,078 [wrapper] cleanup supervisor_pilot 2037481 1028412
[2026-01-29 20:50:41] 2026-01-30 01:50:41,104 [wrapper] Test setup, not cleaning
[2026-01-29 20:50:41] 2026-01-30 01:50:41,139 [wrapper] apfmon messages muted
[2026-01-29 20:50:41] 2026-01-30 01:50:41,161 [wrapper] ==== wrapper stdout END ====
[2026-01-29 20:50:41] 2026-01-30 01:50:41,186 [wrapper] ==== wrapper stderr END ====
[2026-01-29 20:50:41]  *** Error codes and diagnostics ***
[2026-01-29 20:50:41]     "exeErrorCode": 0,
[2026-01-29 20:50:41]     "exeErrorDiag": "",
[2026-01-29 20:50:41]     "pilotErrorCode": 0,
[2026-01-29 20:50:41]     "pilotErrorDiag": "",
[2026-01-29 20:50:41]  *** Listing of results directory ***
[2026-01-29 20:50:41] total 623152
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas    584422 Jan 21 11:33 pilot3.tar.gz
[2026-01-29 20:50:41] -rwx------. 1 boincer umatlas     36322 Jan 21 11:36 runpilot2-wrapper.sh
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas      5111 Jan 21 11:36 queuedata.json
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas       100 Jan 29 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 20:50:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 29 18:03 run_atlas
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas       105 Jan 29 18:03 job.xml
[2026-01-29 20:50:41] -rw-r--r--. 2 boincer umatlas 316140639 Jan 29 18:03 EVNT.48313406._000005.pool.root.1
[2026-01-29 20:50:41] -rw-r--r--. 2 boincer umatlas     15845 Jan 29 18:03 start_atlas.sh
[2026-01-29 20:50:41] drwxrwx--x. 2 boincer umatlas      4096 Jan 29 18:03 shared
[2026-01-29 20:50:41] -rw-r--r--. 2 boincer umatlas    597768 Jan 29 18:03 input.tar.gz
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas         0 Jan 29 18:03 boinc_lockfile
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas      2629 Jan 29 18:03 pandaJob.out
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas        57 Jan 29 18:03 setup.sh.local
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas   1009668 Jan 29 18:04 agis_schedconf.cvmfs.json
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas   1511668 Jan 29 18:04 agis_ddmendpoints.agis.ALL.json
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas       431 Jan 29 18:05 workernode_map.json
[2026-01-29 20:50:41] drwx------. 5 boincer umatlas      4096 Jan 29 18:05 pilot3
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas      7170 Jan 29 20:48 init_data.xml
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas 314534967 Jan 29 20:48 HITS.48313408._000111.pool.root.1
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas       530 Jan 29 20:48 boinc_task_state.xml
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas        95 Jan 29 20:49 pilot_heartbeat.json
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas      1034 Jan 29 20:49 memory_monitor_summary.json
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas    430508 Jan 29 20:49 log.48313408._000111.job.log.tgz.1
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas      6323 Jan 29 20:49 heartbeat.json
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas      8192 Jan 29 20:50 boinc_mmap_file
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas        27 Jan 29 20:50 wrapper_checkpoint.txt
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas      4820 Jan 29 20:50 pilotlog.txt
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas   1311162 Jan 29 20:50 log.48313408._000111.job.log.1
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas       357 Jan 29 20:50 output.list
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas       620 Jan 29 20:50 runtime_log
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas   1761280 Jan 29 20:50 result.tar.gz
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas      9337 Jan 29 20:50 runtime_log.err
[2026-01-29 20:50:41] -rw-------. 1 boincer umatlas       653 Jan 29 20:50 nCsMDmpMq28n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJOsKDmAuHdon.diag
[2026-01-29 20:50:41] -rw-r--r--. 1 boincer umatlas     21415 Jan 29 20:50 stderr.txt
[2026-01-29 20:50:41] HITS file was successfully produced:
[2026-01-29 20:50:42] -rw-------. 1 boincer umatlas 314534967 Jan 29 20:48 shared/HITS.pool.root.1
[2026-01-29 20:50:42]  *** Contents of shared directory: ***
[2026-01-29 20:50:42] total 618224
[2026-01-29 20:50:42] -rw-r--r--. 2 boincer umatlas 316140639 Jan 29 18:03 ATLAS.root_0
[2026-01-29 20:50:42] -rw-r--r--. 2 boincer umatlas     15845 Jan 29 18:03 start_atlas.sh
[2026-01-29 20:50:42] -rw-r--r--. 2 boincer umatlas    597768 Jan 29 18:03 input.tar.gz
[2026-01-29 20:50:42] -rw-------. 1 boincer umatlas 314534967 Jan 29 20:48 HITS.pool.root.1
[2026-01-29 20:50:42] -rw-------. 1 boincer umatlas   1761280 Jan 29 20:50 result.tar.gz
20:50:43 (1016581): run_atlas exited; CPU time 36843.633014
20:50:43 (1016581): called boinc_finish(0)

</stderr_txt>
]]>

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