Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:06 (2688137): wrapper (7.7.26015): starting
10:34:06 (2688137): wrapper: running run_atlas (--nthreads 3)
[2026-01-30 10:34:06] Arguments: --nthreads 3
[2026-01-30 10:34:06] Threads: 3
[2026-01-30 10:34:06] Checking for CVMFS
[2026-01-30 10:34:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 10:34:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 10:34:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 10:34:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 10:34:06] 2.9.2.0 2270422 2582 79612 155672 1 50 25294822 36864000 0 130560 0 1199415 99.989 67367 16020 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 10:34:06] CVMFS is ok
[2026-01-30 10:34:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 10:34:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 10:34:06] Further information can be found at the LHC@home message board.
[2026-01-30 10:34:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 10:34:06] Checking for apptainer binary...
[2026-01-30 10:34:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 10:34:06] Running /usr/bin/apptainer --version
[2026-01-30 10:34:06] apptainer version 1.4.1-1.1
[2026-01-30 10:34:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 10:34:06] thA349
[2026-01-30 10:34:06] apptainer works
[2026-01-30 10:34:06] Set ATHENA_PROC_NUMBER=3
[2026-01-30 10:34:06] Set ATHENA_CORE_NUMBER=3
[2026-01-30 10:34:06] Starting ATLAS job with PandaID=6992120042
[2026-01-30 10:34:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 12:05:28]  *** The last 200 lines of the pilot log: ***
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | job 6992120042 has completed (purged errors)
[2026-01-30 12:05:28] 2026-01-30 11:04:49,606 | INFO     | overall cleanup function is called
[2026-01-30 12:05:28] 2026-01-30 11:04:50,613 | INFO     | --- collectZombieJob: --- 10, [2696598]
[2026-01-30 12:05:28] 2026-01-30 11:04:50,613 | INFO     | zombie collector waiting for pid 2696598
[2026-01-30 12:05:28] 2026-01-30 11:04:50,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 12:05:28] 2026-01-30 11:04:50,613 | INFO     | collected zombie processes
[2026-01-30 12:05:28] 2026-01-30 11:04:50,613 | INFO     | will attempt to kill all subprocesses of pid=2696598
[2026-01-30 12:05:28] 2026-01-30 11:04:50,653 | INFO     | process IDs to be killed: [2696598] (in reverse order)
[2026-01-30 12:05:28] 2026-01-30 11:04:50,677 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 12:05:28] 2026-01-30 11:04:50,677 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 12:05:28] 2026-01-30 11:04:50,678 | INFO     | did not find any defunct processes belonging to 2696598
[2026-01-30 12:05:28] 2026-01-30 11:04:50,679 | INFO     | did not find any defunct processes belonging to 2696598
[2026-01-30 12:05:28] 2026-01-30 11:04:50,680 | INFO     | ready for new job
[2026-01-30 12:05:28] 2026-01-30 11:04:50,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 12:05:28] 2026-01-30 11:04:50,680 | INFO     | **************************************
[2026-01-30 12:05:28] 2026-01-30 11:04:50,681 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 12:05:28] 2026-01-30 11:04:50,681 | INFO     | **************************************
[2026-01-30 12:05:28] 2026-01-30 11:04:50,681 | INFO     | 
[2026-01-30 12:05:28] 2026-01-30 11:04:50,681 | INFO     | architecture information:
[2026-01-30 12:05:28] 2026-01-30 11:04:50,681 | INFO     | executing command: cat /etc/os-release
[2026-01-30 12:05:28] 2026-01-30 11:04:50,689 | INFO     | cat /etc/os-release:
[2026-01-30 12:05:28] NAME="CentOS Linux"
[2026-01-30 12:05:28] VERSION="7 (Core)"
[2026-01-30 12:05:28] ID="centos"
[2026-01-30 12:05:28] ID_LIKE="rhel fedora"
[2026-01-30 12:05:28] VERSION_ID="7"
[2026-01-30 12:05:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 12:05:28] ANSI_COLOR="0;31"
[2026-01-30 12:05:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 12:05:28] HOME_URL="https://www.centos.org/"
[2026-01-30 12:05:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 12:05:28] 
[2026-01-30 12:05:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 12:05:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 12:05:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 12:05:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 12:05:28] 
[2026-01-30 12:05:28] 2026-01-30 11:04:50,689 | INFO     | **************************************
[2026-01-30 12:05:28] 2026-01-30 11:04:51,193 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-30 12:05:28] 2026-01-30 11:04:51,205 | INFO     | sufficient remaining disk space (276219035648 B)
[2026-01-30 12:05:28] 2026-01-30 11:04:51,205 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 12:05:28] 2026-01-30 11:04:51,205 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 12:05:28] 2026-01-30 11:04:51,205 | INFO     | update_server=False
[2026-01-30 12:05:28] 2026-01-30 11:04:51,205 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 12:05:28] 2026-01-30 11:04:51,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 12:05:28] 2026-01-30 11:04:51,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 12:05:28] 2026-01-30 11:04:51,392 | INFO     | all data control threads have been joined
[2026-01-30 12:05:28] 2026-01-30 11:04:51,672 | INFO     | all job control threads have been joined
[2026-01-30 12:05:28] 2026-01-30 11:04:51,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 12:05:28] 2026-01-30 11:04:51,894 | INFO     | aborting loop
[2026-01-30 12:05:28] 2026-01-30 11:04:52,206 | INFO     | [job] queue monitor thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,211 | INFO     | [job] retrieve thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,244 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,321 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,346 | INFO     | [data] copytool_in thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,398 | INFO     | [data] control thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,527 | INFO     | all payload control threads have been joined
[2026-01-30 12:05:28] 2026-01-30 11:04:52,676 | INFO     | [payload] validate_post thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,677 | INFO     | [job] control thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,807 | INFO     | [payload] failed_post thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:52,900 | INFO     | [job] job monitor thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:53,316 | INFO     | [data] copytool_out thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:53,532 | INFO     | [payload] control thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:53,683 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:53,692 | INFO     | [job] validate thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:53,701 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:04:54,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 12:05:28] 2026-01-30 11:04:58,717 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 12:05:28] 2026-01-30 11:05:21,722 | INFO     | [monitor] cgroup control has ended
[2026-01-30 12:05:28] 2026-01-30 11:05:21,868 | INFO     | PID=2692178 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-30 12:05:28] 2026-01-30 11:05:21,868 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 12:05:28] 2026-01-30 11:05:21,868 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 12:05:28] 2026-01-30 11:05:21,868 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 12:05:28] 2026-01-30 11:05:22,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038503458624)>', '<ExcThread(monitor, started 140037878445824)>']
[2026-01-30 12:05:28] 2026-01-30 11:05:23,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 12:05:28] 2026-01-30 11:05:23,879 | INFO     | [monitor] control thread has ended
[2026-01-30 12:05:28] 2026-01-30 11:05:27,958 | INFO     | all workflow threads have been joined
[2026-01-30 12:05:28] 2026-01-30 11:05:27,958 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 12:05:28] 2026-01-30 11:05:27,959 | INFO     | traces error code: 0
[2026-01-30 12:05:28] 2026-01-30 11:05:27,959 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 12:05:28] 2026-01-30 11:05:28,008 [wrapper] ==== pilot stdout END ====
[2026-01-30 12:05:28] 2026-01-30 11:05:28,011 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 12:05:28] 2026-01-30 11:05:28,013 [wrapper] pilotpid: 2692178
[2026-01-30 12:05:28] 2026-01-30 11:05:28,016 [wrapper] Pilot exit status: 0
[2026-01-30 12:05:28] 2026-01-30 11:05:28,023 [wrapper] pandaids: 6992120042
[2026-01-30 12:05:28] 2026-01-30 11:05:28,038 [wrapper] cleanup supervisor_pilot 2701747 2692179
[2026-01-30 12:05:28] 2026-01-30 11:05:28,041 [wrapper] Test setup, not cleaning
[2026-01-30 12:05:28] 2026-01-30 11:05:28,043 [wrapper] apfmon messages muted
[2026-01-30 12:05:28] 2026-01-30 11:05:28,045 [wrapper] ==== wrapper stdout END ====
[2026-01-30 12:05:28] 2026-01-30 11:05:28,048 [wrapper] ==== wrapper stderr END ====
[2026-01-30 12:05:28]  *** Error codes and diagnostics ***
[2026-01-30 12:05:28]     "exeErrorCode": 0,
[2026-01-30 12:05:28]     "exeErrorDiag": "",
[2026-01-30 12:05:28]     "pilotErrorCode": 0,
[2026-01-30 12:05:28]     "pilotErrorDiag": "",
[2026-01-30 12:05:28]  *** Listing of results directory ***
[2026-01-30 12:05:28] total 674708
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc    584422 Jan 29 17:55 pilot3.tar.gz
[2026-01-30 12:05:28] -rwx------ 1 boinc boinc     36322 Jan 29 17:59 runpilot2-wrapper.sh
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc      5111 Jan 29 18:03 queuedata.json
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc       100 Jan 30 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 12:05:28] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 10:34 run_atlas
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc       105 Jan 30 10:34 job.xml
[2026-01-30 12:05:28] -rw-r--r-- 2 boinc boinc 500145308 Jan 30 10:34 EVNT.48317949._000034.pool.root.1
[2026-01-30 12:05:28] -rw-r--r-- 2 boinc boinc    597765 Jan 30 10:34 input.tar.gz
[2026-01-30 12:05:28] -rw-r--r-- 2 boinc boinc     15845 Jan 30 10:34 start_atlas.sh
[2026-01-30 12:05:28] drwxrwx--x 2 boinc boinc      4096 Jan 30 10:34 shared
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc         0 Jan 30 10:34 boinc_setup_complete
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc      6445 Jan 30 10:34 init_data.xml
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc         0 Jan 30 10:34 boinc_lockfile
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc      2521 Jan 30 10:34 pandaJob.out
[2026-01-30 12:05:28] -rw------- 1 boinc boinc   1010515 Jan 30 10:34 agis_schedconf.cvmfs.json
[2026-01-30 12:05:28] -rw------- 1 boinc boinc   1511668 Jan 30 10:34 agis_ddmendpoints.agis.ALL.json
[2026-01-30 12:05:28] -rw------- 1 boinc boinc       423 Jan 30 10:34 workernode_map.json
[2026-01-30 12:05:28] drwx------ 5 boinc boinc      4096 Jan 30 10:34 pilot3
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc       531 Jan 30 12:04 boinc_task_state.xml
[2026-01-30 12:05:28] -rw------- 1 boinc boinc 184655723 Jan 30 12:04 HITS.48317952._004007.pool.root.1
[2026-01-30 12:05:28] -rw------- 1 boinc boinc        95 Jan 30 12:04 pilot_heartbeat.json
[2026-01-30 12:05:28] -rw------- 1 boinc boinc      1014 Jan 30 12:04 memory_monitor_summary.json
[2026-01-30 12:05:28] -rw------- 1 boinc boinc    290520 Jan 30 12:04 log.48317952._004007.job.log.tgz.1
[2026-01-30 12:05:28] -rw------- 1 boinc boinc      6297 Jan 30 12:04 heartbeat.json
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc        27 Jan 30 12:05 wrapper_checkpoint.txt
[2026-01-30 12:05:28] -rw------- 1 boinc boinc      4748 Jan 30 12:05 pilotlog.txt
[2026-01-30 12:05:28] -rw------- 1 boinc boinc    793003 Jan 30 12:05 log.48317952._004007.job.log.1
[2026-01-30 12:05:28] -rw------- 1 boinc boinc       357 Jan 30 12:05 output.list
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc       620 Jan 30 12:05 runtime_log
[2026-01-30 12:05:28] -rw------- 1 boinc boinc   1105920 Jan 30 12:05 result.tar.gz
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc      8896 Jan 30 12:05 runtime_log.err
[2026-01-30 12:05:28] -rw------- 1 boinc boinc       657 Jan 30 12:05 L1bNDmaXk58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnHJKDmWE63Em.diag
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc      8192 Jan 30 12:05 boinc_mmap_file
[2026-01-30 12:05:28] -rw-r--r-- 1 boinc boinc     12735 Jan 30 12:05 stderr.txt
[2026-01-30 12:05:28] HITS file was successfully produced:
[2026-01-30 12:05:28] -rw------- 1 boinc boinc 184655723 Jan 30 12:04 shared/HITS.pool.root.1
[2026-01-30 12:05:28]  *** Contents of shared directory: ***
[2026-01-30 12:05:28] total 670440
[2026-01-30 12:05:28] -rw-r--r-- 2 boinc boinc 500145308 Jan 30 10:34 ATLAS.root_0
[2026-01-30 12:05:28] -rw-r--r-- 2 boinc boinc    597765 Jan 30 10:34 input.tar.gz
[2026-01-30 12:05:28] -rw-r--r-- 2 boinc boinc     15845 Jan 30 10:34 start_atlas.sh
[2026-01-30 12:05:28] -rw------- 1 boinc boinc 184655723 Jan 30 12:04 HITS.pool.root.1
[2026-01-30 12:05:28] -rw------- 1 boinc boinc   1105920 Jan 30 12:05 result.tar.gz
12:05:50 (2688137): run_atlas exited; CPU time 15648.182042
12:05:50 (2688137): called boinc_finish(0)

</stderr_txt>
]]>

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