Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:56:44 (1506587): wrapper (7.7.26015): starting
02:56:44 (1506587): wrapper: running run_atlas (--nthreads 4)
[2026-01-30 02:56:44] Arguments: --nthreads 4
[2026-01-30 02:56:44] Threads: 4
[2026-01-30 02:56:44] Checking for CVMFS
[2026-01-30 02:56:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 02:56:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 02:56:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 02:56:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 02:56:45] 2.9.2.0 1058158 2081 90960 155661 1 50 34784225 36864001 0 130560 0 1268865 99.991 51146 11434 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 02:56:45] CVMFS is ok
[2026-01-30 02:56:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 02:56:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 02:56:45] Further information can be found at the LHC@home message board.
[2026-01-30 02:56:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 02:56:45] Checking for apptainer binary...
[2026-01-30 02:56:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 02:56:45] Running /usr/bin/apptainer --version
[2026-01-30 02:56:45] apptainer version 1.4.1-1.1
[2026-01-30 02:56:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 02:56:45] thA315b
[2026-01-30 02:56:45] apptainer works
[2026-01-30 02:56:45] Set ATHENA_PROC_NUMBER=4
[2026-01-30 02:56:45] Set ATHENA_CORE_NUMBER=4
[2026-01-30 02:56:45] Starting ATLAS job with PandaID=6985623633
[2026-01-30 02:56:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 04:01:06]  *** The last 200 lines of the pilot log: ***
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | job 6985623633 has completed (purged errors)
[2026-01-30 04:01:06] 2026-01-30 03:00:31,773 | INFO     | overall cleanup function is called
[2026-01-30 04:01:06] 2026-01-30 03:00:32,780 | INFO     | --- collectZombieJob: --- 10, [1515216]
[2026-01-30 04:01:06] 2026-01-30 03:00:32,780 | INFO     | zombie collector waiting for pid 1515216
[2026-01-30 04:01:06] 2026-01-30 03:00:32,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 04:01:06] 2026-01-30 03:00:32,780 | INFO     | collected zombie processes
[2026-01-30 04:01:06] 2026-01-30 03:00:32,780 | INFO     | will attempt to kill all subprocesses of pid=1515216
[2026-01-30 04:01:06] 2026-01-30 03:00:32,825 | INFO     | process IDs to be killed: [1515216] (in reverse order)
[2026-01-30 04:01:06] 2026-01-30 03:00:32,853 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 04:01:06] 2026-01-30 03:00:32,853 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 04:01:06] 2026-01-30 03:00:32,854 | INFO     | did not find any defunct processes belonging to 1515216
[2026-01-30 04:01:06] 2026-01-30 03:00:32,855 | INFO     | did not find any defunct processes belonging to 1515216
[2026-01-30 04:01:06] 2026-01-30 03:00:32,855 | INFO     | ready for new job
[2026-01-30 04:01:06] 2026-01-30 03:00:32,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 04:01:06] 2026-01-30 03:00:32,856 | INFO     | **************************************
[2026-01-30 04:01:06] 2026-01-30 03:00:32,856 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 04:01:06] 2026-01-30 03:00:32,856 | INFO     | **************************************
[2026-01-30 04:01:06] 2026-01-30 03:00:32,856 | INFO     | 
[2026-01-30 04:01:06] 2026-01-30 03:00:32,857 | INFO     | architecture information:
[2026-01-30 04:01:06] 2026-01-30 03:00:32,857 | INFO     | executing command: cat /etc/os-release
[2026-01-30 04:01:06] 2026-01-30 03:00:32,867 | INFO     | cat /etc/os-release:
[2026-01-30 04:01:06] NAME="CentOS Linux"
[2026-01-30 04:01:06] VERSION="7 (Core)"
[2026-01-30 04:01:06] ID="centos"
[2026-01-30 04:01:06] ID_LIKE="rhel fedora"
[2026-01-30 04:01:06] VERSION_ID="7"
[2026-01-30 04:01:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 04:01:06] ANSI_COLOR="0;31"
[2026-01-30 04:01:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 04:01:06] HOME_URL="https://www.centos.org/"
[2026-01-30 04:01:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 04:01:06] 
[2026-01-30 04:01:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 04:01:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 04:01:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 04:01:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 04:01:06] 
[2026-01-30 04:01:06] 2026-01-30 03:00:32,867 | INFO     | **************************************
[2026-01-30 04:01:06] 2026-01-30 03:00:33,370 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-30 04:01:06] 2026-01-30 03:00:33,384 | INFO     | sufficient remaining disk space (320309559296 B)
[2026-01-30 04:01:06] 2026-01-30 03:00:33,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 04:01:06] 2026-01-30 03:00:33,384 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 04:01:06] 2026-01-30 03:00:33,385 | INFO     | update_server=False
[2026-01-30 04:01:06] 2026-01-30 03:00:33,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 04:01:06] 2026-01-30 03:00:33,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 04:01:06] 2026-01-30 03:00:33,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 04:01:06] 2026-01-30 03:00:33,577 | INFO     | all data control threads have been joined
[2026-01-30 04:01:06] 2026-01-30 03:00:33,904 | INFO     | all job control threads have been joined
[2026-01-30 04:01:06] 2026-01-30 03:00:34,043 | INFO     | job.realtimelogging is not enabled
[2026-01-30 04:01:06] 2026-01-30 03:00:34,245 | INFO     | all payload control threads have been joined
[2026-01-30 04:01:06] 2026-01-30 03:00:34,390 | INFO     | [job] retrieve thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:34,391 | INFO     | [job] queue monitor thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:34,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 04:01:06] 2026-01-30 03:00:34,583 | INFO     | [data] control thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:34,702 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:34,856 | INFO     | [payload] failed_post thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:34,910 | INFO     | [job] control thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:34,985 | INFO     | [job] validate thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,034 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,049 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,060 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,215 | INFO     | [data] copytool_in thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,251 | INFO     | [payload] control thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,393 | INFO     | [payload] validate_post thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:35,790 | WARNING  | process 1515216 can no longer be monitored (due to stat problems) - aborting
[2026-01-30 04:01:06] 2026-01-30 03:00:35,821 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-30 04:01:06] 2026-01-30 03:00:35,859 | INFO     | number of running child processes to parent process 1515216: 1
[2026-01-30 04:01:06] 2026-01-30 03:00:35,859 | INFO     | maximum number of monitored processes: 6
[2026-01-30 04:01:06] 2026-01-30 03:00:35,859 | INFO     | aborting job monitoring since job object (job id=6985623633) has expired
[2026-01-30 04:01:06] 2026-01-30 03:00:35,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 04:01:06] 2026-01-30 03:00:35,859 | INFO     | will abort loop
[2026-01-30 04:01:06] 2026-01-30 03:00:36,499 | INFO     | [data] copytool_out thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:36,865 | INFO     | [job] job monitor thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:00:37,392 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 04:01:06] 2026-01-30 03:01:00,341 | INFO     | [monitor] cgroup control has ended
[2026-01-30 04:01:06] 2026-01-30 03:01:01,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140277740631872)>', '<ExcThread(monitor, started 140277104760576)>']
[2026-01-30 04:01:06] 2026-01-30 03:01:03,489 | INFO     | PID=1510704 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-30 04:01:06] 2026-01-30 03:01:03,489 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 04:01:06] 2026-01-30 03:01:03,489 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 04:01:06] 2026-01-30 03:01:03,489 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 04:01:06] 2026-01-30 03:01:03,489 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 04:01:06] 2026-01-30 03:01:03,489 | INFO     | [monitor] control thread has ended
[2026-01-30 04:01:06] 2026-01-30 03:01:06,581 | INFO     | all workflow threads have been joined
[2026-01-30 04:01:06] 2026-01-30 03:01:06,581 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 04:01:06] 2026-01-30 03:01:06,581 | INFO     | traces error code: 0
[2026-01-30 04:01:06] 2026-01-30 03:01:06,582 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 04:01:06] 2026-01-30 03:01:06,637 [wrapper] ==== pilot stdout END ====
[2026-01-30 04:01:06] 2026-01-30 03:01:06,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 04:01:06] 2026-01-30 03:01:06,642 [wrapper] pilotpid: 1510704
[2026-01-30 04:01:06] 2026-01-30 03:01:06,645 [wrapper] Pilot exit status: 0
[2026-01-30 04:01:06] 2026-01-30 03:01:06,652 [wrapper] pandaids: 6985623633
[2026-01-30 04:01:06] 2026-01-30 03:01:06,671 [wrapper] cleanup supervisor_pilot 1520229 1510705
[2026-01-30 04:01:06] 2026-01-30 03:01:06,673 [wrapper] Test setup, not cleaning
[2026-01-30 04:01:06] 2026-01-30 03:01:06,675 [wrapper] apfmon messages muted
[2026-01-30 04:01:06] 2026-01-30 03:01:06,678 [wrapper] ==== wrapper stdout END ====
[2026-01-30 04:01:06] 2026-01-30 03:01:06,681 [wrapper] ==== wrapper stderr END ====
[2026-01-30 04:01:06]  *** Error codes and diagnostics ***
[2026-01-30 04:01:06]     "exeErrorCode": 0,
[2026-01-30 04:01:06]     "exeErrorDiag": "",
[2026-01-30 04:01:06]     "pilotErrorCode": 0,
[2026-01-30 04:01:06]     "pilotErrorDiag": "",
[2026-01-30 04:01:06]  *** Listing of results directory ***
[2026-01-30 04:01:06] total 676016
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc    584422 Jan 28 14:49 pilot3.tar.gz
[2026-01-30 04:01:06] -rwx------ 1 boinc boinc     36322 Jan 28 14:49 runpilot2-wrapper.sh
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc      5111 Jan 28 14:50 queuedata.json
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc       100 Jan 30 02:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 04:01:06] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 02:56 run_atlas
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc       105 Jan 30 02:56 job.xml
[2026-01-30 04:01:06] -rw-r--r-- 2 boinc boinc 499926193 Jan 30 02:56 EVNT.48317929._000100.pool.root.1
[2026-01-30 04:01:06] -rw-r--r-- 2 boinc boinc    597763 Jan 30 02:56 input.tar.gz
[2026-01-30 04:01:06] -rw-r--r-- 2 boinc boinc     15845 Jan 30 02:56 start_atlas.sh
[2026-01-30 04:01:06] drwxrwx--x 2 boinc boinc      4096 Jan 30 02:56 shared
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc         0 Jan 30 02:56 boinc_setup_complete
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc      6443 Jan 30 02:56 init_data.xml
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc         0 Jan 30 02:56 boinc_lockfile
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc      2508 Jan 30 02:56 pandaJob.out
[2026-01-30 04:01:06] -rw------- 1 boinc boinc   1009660 Jan 30 02:56 agis_schedconf.cvmfs.json
[2026-01-30 04:01:06] -rw------- 1 boinc boinc   1511668 Jan 30 02:56 agis_ddmendpoints.agis.ALL.json
[2026-01-30 04:01:06] -rw------- 1 boinc boinc       424 Jan 30 02:56 workernode_map.json
[2026-01-30 04:01:06] drwx------ 5 boinc boinc      4096 Jan 30 02:56 pilot3
[2026-01-30 04:01:06] -rw------- 1 boinc boinc        95 Jan 30 04:00 pilot_heartbeat.json
[2026-01-30 04:01:06] -rw------- 1 boinc boinc 186737356 Jan 30 04:00 HITS.48317931._003783.pool.root.1
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc       530 Jan 30 04:00 boinc_task_state.xml
[2026-01-30 04:01:06] -rw------- 1 boinc boinc      1017 Jan 30 04:00 memory_monitor_summary.json
[2026-01-30 04:01:06] -rw------- 1 boinc boinc    253913 Jan 30 04:00 log.48317931._003783.job.log.tgz.1
[2026-01-30 04:01:06] -rw------- 1 boinc boinc      6300 Jan 30 04:00 heartbeat.json
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc      8192 Jan 30 04:00 boinc_mmap_file
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc        27 Jan 30 04:00 wrapper_checkpoint.txt
[2026-01-30 04:01:06] -rw------- 1 boinc boinc      5344 Jan 30 04:01 pilotlog.txt
[2026-01-30 04:01:06] -rw------- 1 boinc boinc    572443 Jan 30 04:01 log.48317931._003783.job.log.1
[2026-01-30 04:01:06] -rw------- 1 boinc boinc       357 Jan 30 04:01 output.list
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc       620 Jan 30 04:01 runtime_log
[2026-01-30 04:01:06] -rw------- 1 boinc boinc    839680 Jan 30 04:01 result.tar.gz
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc      8901 Jan 30 04:01 runtime_log.err
[2026-01-30 04:01:06] -rw------- 1 boinc boinc       658 Jan 30 04:01 C3fMDmW6K58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmgAGKDm31Gmzn.diag
[2026-01-30 04:01:06] -rw-r--r-- 1 boinc boinc     12246 Jan 30 04:01 stderr.txt
[2026-01-30 04:01:06] HITS file was successfully produced:
[2026-01-30 04:01:06] -rw------- 1 boinc boinc 186737356 Jan 30 04:00 shared/HITS.pool.root.1
[2026-01-30 04:01:06]  *** Contents of shared directory: ***
[2026-01-30 04:01:06] total 672004
[2026-01-30 04:01:06] -rw-r--r-- 2 boinc boinc 499926193 Jan 30 02:56 ATLAS.root_0
[2026-01-30 04:01:06] -rw-r--r-- 2 boinc boinc    597763 Jan 30 02:56 input.tar.gz
[2026-01-30 04:01:06] -rw-r--r-- 2 boinc boinc     15845 Jan 30 02:56 start_atlas.sh
[2026-01-30 04:01:06] -rw------- 1 boinc boinc 186737356 Jan 30 04:00 HITS.pool.root.1
[2026-01-30 04:01:06] -rw------- 1 boinc boinc    839680 Jan 30 04:01 result.tar.gz
04:01:08 (1506587): run_atlas exited; CPU time 14297.678303
04:01:08 (1506587): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN