Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:04:47 (459435): wrapper (7.7.26015): starting
01:04:47 (459435): wrapper: running run_atlas (--nthreads 4)
[2026-01-30 01:04:47] Arguments: --nthreads 4
[2026-01-30 01:04:47] Threads: 4
[2026-01-30 01:04:47] Checking for CVMFS
[2026-01-30 01:04:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-30 01:04:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-30 01:04:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-30 01:04:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-30 01:04:48] 2.9.2.0 53194 2066 95272 155659 0 50 23260091 36864000 0 130560 0 1150168 99.990 49912 10583 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-30 01:04:48] CVMFS is ok
[2026-01-30 01:04:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-30 01:04:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-30 01:04:48] Further information can be found at the LHC@home message board.
[2026-01-30 01:04:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-30 01:04:48] Checking for apptainer binary...
[2026-01-30 01:04:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-30 01:04:48] Running /usr/bin/apptainer --version
[2026-01-30 01:04:48] apptainer version 1.4.1-1.1
[2026-01-30 01:04:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-30 01:04:48] thA334
[2026-01-30 01:04:48] apptainer works
[2026-01-30 01:04:48] Set ATHENA_PROC_NUMBER=4
[2026-01-30 01:04:48] Set ATHENA_CORE_NUMBER=4
[2026-01-30 01:04:48] Starting ATLAS job with PandaID=6991530509
[2026-01-30 01:04:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-30 02:19:32]  *** The last 200 lines of the pilot log: ***
[2026-01-30 02:19:32] 2026-01-30 01:19:00,789 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-30 02:19:32] 2026-01-30 01:19:00,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-30 02:19:32] 2026-01-30 01:19:00,789 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-30 02:19:32] 2026-01-30 01:19:00,789 | INFO     | job 6991530509 has completed (purged errors)
[2026-01-30 02:19:32] 2026-01-30 01:19:00,789 | INFO     | overall cleanup function is called
[2026-01-30 02:19:32] 2026-01-30 01:19:01,796 | INFO     | --- collectZombieJob: --- 10, [468057]
[2026-01-30 02:19:32] 2026-01-30 01:19:01,796 | INFO     | zombie collector waiting for pid 468057
[2026-01-30 02:19:32] 2026-01-30 01:19:01,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-30 02:19:32] 2026-01-30 01:19:01,797 | INFO     | collected zombie processes
[2026-01-30 02:19:32] 2026-01-30 01:19:01,797 | INFO     | will attempt to kill all subprocesses of pid=468057
[2026-01-30 02:19:32] 2026-01-30 01:19:01,839 | INFO     | process IDs to be killed: [468057] (in reverse order)
[2026-01-30 02:19:32] 2026-01-30 01:19:01,869 | WARNING  | found no corresponding commands to process id(s)
[2026-01-30 02:19:32] 2026-01-30 01:19:01,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-30 02:19:32] 2026-01-30 01:19:01,871 | INFO     | did not find any defunct processes belonging to 468057
[2026-01-30 02:19:32] 2026-01-30 01:19:01,872 | INFO     | did not find any defunct processes belonging to 468057
[2026-01-30 02:19:32] 2026-01-30 01:19:01,872 | INFO     | ready for new job
[2026-01-30 02:19:32] 2026-01-30 01:19:01,873 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-30 02:19:32] 2026-01-30 01:19:01,873 | INFO     | **************************************
[2026-01-30 02:19:32] 2026-01-30 01:19:01,873 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-30 02:19:32] 2026-01-30 01:19:01,873 | INFO     | **************************************
[2026-01-30 02:19:32] 2026-01-30 01:19:01,873 | INFO     | 
[2026-01-30 02:19:32] 2026-01-30 01:19:01,874 | INFO     | architecture information:
[2026-01-30 02:19:32] 2026-01-30 01:19:01,874 | INFO     | executing command: cat /etc/os-release
[2026-01-30 02:19:32] 2026-01-30 01:19:01,887 | INFO     | cat /etc/os-release:
[2026-01-30 02:19:32] NAME="CentOS Linux"
[2026-01-30 02:19:32] VERSION="7 (Core)"
[2026-01-30 02:19:32] ID="centos"
[2026-01-30 02:19:32] ID_LIKE="rhel fedora"
[2026-01-30 02:19:32] VERSION_ID="7"
[2026-01-30 02:19:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-30 02:19:32] ANSI_COLOR="0;31"
[2026-01-30 02:19:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-30 02:19:32] HOME_URL="https://www.centos.org/"
[2026-01-30 02:19:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-30 02:19:32] 
[2026-01-30 02:19:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-30 02:19:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-30 02:19:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-30 02:19:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-30 02:19:32] 
[2026-01-30 02:19:32] 2026-01-30 01:19:01,887 | INFO     | **************************************
[2026-01-30 02:19:32] 2026-01-30 01:19:02,390 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-30 02:19:32] 2026-01-30 01:19:02,405 | INFO     | sufficient remaining disk space (232582545408 B)
[2026-01-30 02:19:32] 2026-01-30 01:19:02,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | INFO     | current server update state: UPDATING_FINAL
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | INFO     | update_server=False
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | INFO     | aborting loop
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-30 02:19:32] 2026-01-30 01:19:02,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-30 02:19:32] 2026-01-30 01:19:02,528 | INFO     | all payload control threads have been joined
[2026-01-30 02:19:32] 2026-01-30 01:19:02,568 | INFO     | all data control threads have been joined
[2026-01-30 02:19:32] 2026-01-30 01:19:03,411 | INFO     | [job] retrieve thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,412 | INFO     | [job] job monitor thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,412 | INFO     | [job] queue monitor thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,427 | INFO     | [job] create_data_payload thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,517 | INFO     | [payload] validate_pre thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,534 | INFO     | [payload] control thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,574 | INFO     | [data] control thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,655 | INFO     | [data] copytool_in thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,672 | INFO     | all job control threads have been joined
[2026-01-30 02:19:32] 2026-01-30 01:19:03,830 | INFO     | [payload] validate_post thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:03,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-30 02:19:32] 2026-01-30 01:19:04,231 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:04,412 | INFO     | [data] copytool_out thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:04,473 | INFO     | [payload] execute_payloads thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:04,678 | INFO     | [job] control thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:04,825 | INFO     | [job] validate thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:04,887 | INFO     | [payload] failed_post thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:06,122 | INFO     | [monitor] cgroup control has ended
[2026-01-30 02:19:32] 2026-01-30 01:19:07,875 | INFO     | [data] queue_monitor thread has finished
[2026-01-30 02:19:32] 2026-01-30 01:19:09,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139707580151616)>', '<ExcThread(monitor, started 139706486482688)>']
[2026-01-30 02:19:32] 2026-01-30 01:19:14,197 | INFO     | all workflow threads have been joined
[2026-01-30 02:19:32] 2026-01-30 01:19:14,197 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-30 02:19:32] 2026-01-30 01:19:14,197 | INFO     | traces error code: 0
[2026-01-30 02:19:32] 2026-01-30 01:19:14,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-30 02:19:32] 2026-01-30 01:19:32,772 | INFO     | PID=463541 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-30 02:19:32] 2026-01-30 01:19:32,772 | INFO     | found 0 job(s) in 20 queues
[2026-01-30 02:19:32] 2026-01-30 01:19:32,772 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-30 02:19:32] 2026-01-30 01:19:32,772 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-30 02:19:32] 2026-01-30 01:19:32,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-30 02:19:32] 2026-01-30 01:19:32,772 | INFO     | [monitor] control thread has ended
[2026-01-30 02:19:32] 2026-01-30 01:19:32,838 [wrapper] ==== pilot stdout END ====
[2026-01-30 02:19:32] 2026-01-30 01:19:32,841 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-30 02:19:32] 2026-01-30 01:19:32,845 [wrapper] pilotpid: 463541
[2026-01-30 02:19:32] 2026-01-30 01:19:32,849 [wrapper] Pilot exit status: 0
[2026-01-30 02:19:32] 2026-01-30 01:19:32,859 [wrapper] pandaids: 6991530509
[2026-01-30 02:19:32] 2026-01-30 01:19:32,879 [wrapper] cleanup supervisor_pilot  473092 463542
[2026-01-30 02:19:32] 2026-01-30 01:19:32,882 [wrapper] Test setup, not cleaning
[2026-01-30 02:19:32] 2026-01-30 01:19:32,886 [wrapper] apfmon messages muted
[2026-01-30 02:19:32] 2026-01-30 01:19:32,889 [wrapper] ==== wrapper stdout END ====
[2026-01-30 02:19:32] 2026-01-30 01:19:32,892 [wrapper] ==== wrapper stderr END ====
[2026-01-30 02:19:32]  *** Error codes and diagnostics ***
[2026-01-30 02:19:32]     "exeErrorCode": 0,
[2026-01-30 02:19:32]     "exeErrorDiag": "",
[2026-01-30 02:19:32]     "pilotErrorCode": 0,
[2026-01-30 02:19:32]     "pilotErrorDiag": "",
[2026-01-30 02:19:32]  *** Listing of results directory ***
[2026-01-30 02:19:32] total 673720
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc    584422 Jan 29 11:47 pilot3.tar.gz
[2026-01-30 02:19:32] -rwx------ 1 boinc boinc     36322 Jan 29 11:48 runpilot2-wrapper.sh
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc      5111 Jan 29 11:50 queuedata.json
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc       100 Jan 30 01:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-30 02:19:32] -rwxr-xr-x 1 boinc boinc      7986 Jan 30 01:04 run_atlas
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc       105 Jan 30 01:04 job.xml
[2026-01-30 02:19:32] -rw-r--r-- 2 boinc boinc 501444230 Jan 30 01:04 EVNT.48317889._000033.pool.root.1
[2026-01-30 02:19:32] -rw-r--r-- 2 boinc boinc    597758 Jan 30 01:04 input.tar.gz
[2026-01-30 02:19:32] -rw-r--r-- 2 boinc boinc     15845 Jan 30 01:04 start_atlas.sh
[2026-01-30 02:19:32] drwxrwx--x 2 boinc boinc      4096 Jan 30 01:04 shared
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc         0 Jan 30 01:04 boinc_setup_complete
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc      6369 Jan 30 01:04 init_data.xml
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc         0 Jan 30 01:04 boinc_lockfile
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc      2520 Jan 30 01:04 pandaJob.out
[2026-01-30 02:19:32] -rw------- 1 boinc boinc   1009660 Jan 30 01:04 agis_schedconf.cvmfs.json
[2026-01-30 02:19:32] -rw------- 1 boinc boinc   1511668 Jan 30 01:04 agis_ddmendpoints.agis.ALL.json
[2026-01-30 02:19:32] -rw------- 1 boinc boinc       419 Jan 30 01:04 workernode_map.json
[2026-01-30 02:19:32] drwx------ 5 boinc boinc      4096 Jan 30 01:05 pilot3
[2026-01-30 02:19:32] -rw------- 1 boinc boinc 182608989 Jan 30 02:18 HITS.48317892._001682.pool.root.1
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc       530 Jan 30 02:18 boinc_task_state.xml
[2026-01-30 02:19:32] -rw------- 1 boinc boinc      1020 Jan 30 02:18 memory_monitor_summary.json
[2026-01-30 02:19:32] -rw------- 1 boinc boinc    299928 Jan 30 02:18 log.48317892._001682.job.log.tgz.1
[2026-01-30 02:19:32] -rw------- 1 boinc boinc      6298 Jan 30 02:19 heartbeat.json
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc        27 Jan 30 02:19 wrapper_checkpoint.txt
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc      8192 Jan 30 02:19 boinc_mmap_file
[2026-01-30 02:19:32] -rw------- 1 boinc boinc       746 Jan 30 02:19 pilotlog.txt
[2026-01-30 02:19:32] -rw------- 1 boinc boinc        95 Jan 30 02:19 pilot_heartbeat.json
[2026-01-30 02:19:32] -rw------- 1 boinc boinc    655025 Jan 30 02:19 log.48317892._001682.job.log.1
[2026-01-30 02:19:32] -rw------- 1 boinc boinc       357 Jan 30 02:19 output.list
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc       620 Jan 30 02:19 runtime_log
[2026-01-30 02:19:32] -rw------- 1 boinc boinc    972800 Jan 30 02:19 result.tar.gz
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc      8896 Jan 30 02:19 runtime_log.err
[2026-01-30 02:19:32] -rw------- 1 boinc boinc       657 Jan 30 02:19 RSzNDmlke58n9Rq4apOajLDm4fhM0noT9bVooX4SDmqSIKDmweRazn.diag
[2026-01-30 02:19:32] -rw-r--r-- 1 boinc boinc     11095 Jan 30 02:19 stderr.txt
[2026-01-30 02:19:32] HITS file was successfully produced:
[2026-01-30 02:19:32] -rw------- 1 boinc boinc 182608989 Jan 30 02:18 shared/HITS.pool.root.1
[2026-01-30 02:19:32]  *** Contents of shared directory: ***
[2026-01-30 02:19:32] total 669584
[2026-01-30 02:19:32] -rw-r--r-- 2 boinc boinc 501444230 Jan 30 01:04 ATLAS.root_0
[2026-01-30 02:19:32] -rw-r--r-- 2 boinc boinc    597758 Jan 30 01:04 input.tar.gz
[2026-01-30 02:19:32] -rw-r--r-- 2 boinc boinc     15845 Jan 30 01:04 start_atlas.sh
[2026-01-30 02:19:32] -rw------- 1 boinc boinc 182608989 Jan 30 02:18 HITS.pool.root.1
[2026-01-30 02:19:32] -rw------- 1 boinc boinc    972800 Jan 30 02:19 result.tar.gz
02:19:34 (459435): run_atlas exited; CPU time 16651.906104
02:19:34 (459435): called boinc_finish(0)

</stderr_txt>
]]>

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