Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:26 (560663): wrapper (7.7.26015): starting
00:01:26 (560663): wrapper: running run_atlas (--nthreads 8)
[2026-01-29 00:01:26] Arguments: --nthreads 8
[2026-01-29 00:01:26] Threads: 8
[2026-01-29 00:01:26] Checking for CVMFS
[2026-01-29 00:01:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 00:01:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 00:01:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 00:01:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 00:01:29] 2.13.3.0 9262 121629 241604 155626 1 911 27425296 32935936 20456 16776704 0 613003737 99.727 416254256 32508 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-29 00:01:29] CVMFS is ok
[2026-01-29 00:01:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 00:01:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 00:01:29] Further information can be found at the LHC@home message board.
[2026-01-29 00:01:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 00:01:29] Checking for apptainer binary...
[2026-01-29 00:01:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 00:01:29] Running /usr/bin/apptainer --version
[2026-01-29 00:01:30] apptainer version 1.4.5-2.el9
[2026-01-29 00:01:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 00:01:30] c-8-32.aglt2.org
[2026-01-29 00:01:30] apptainer works
[2026-01-29 00:01:31] Set ATHENA_PROC_NUMBER=8
[2026-01-29 00:01:31] Set ATHENA_CORE_NUMBER=8
[2026-01-29 00:01:31] Starting ATLAS job with PandaID=6985859191
[2026-01-29 00:01:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:30:34 (721111): wrapper (7.7.26015): starting
00:30:34 (721111): wrapper: running run_atlas (--nthreads 10)
[2026-01-29 00:30:34] Arguments: --nthreads 10
[2026-01-29 00:30:34] Threads: 10
[2026-01-29 00:30:34] This job has been restarted, cleaning up previous attempt
[2026-01-29 00:30:34] Checking for CVMFS
[2026-01-29 00:30:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 00:30:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 00:30:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 00:30:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 00:30:36] 2.13.3.0 9262 121658 241960 155626 0 915 27923405 32935937 17902 16776704 0 613282985 99.727 416348765 32507 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-29 00:30:36] CVMFS is ok
[2026-01-29 00:30:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 00:30:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 00:30:36] Further information can be found at the LHC@home message board.
[2026-01-29 00:30:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 00:30:36] Checking for apptainer binary...
[2026-01-29 00:30:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 00:30:36] Running /usr/bin/apptainer --version
[2026-01-29 00:30:36] apptainer version 1.4.5-2.el9
[2026-01-29 00:30:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 00:30:36] c-8-32.aglt2.org
[2026-01-29 00:30:36] apptainer works
[2026-01-29 00:30:36] Set ATHENA_PROC_NUMBER=10
[2026-01-29 00:30:36] Set ATHENA_CORE_NUMBER=10
[2026-01-29 00:30:36] Starting ATLAS job with PandaID=6985859191
[2026-01-29 00:30:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 18:42:32]  *** The last 200 lines of the pilot log: ***
[2026-01-29 18:42:32] 2026-01-29 23:38:42,406 | INFO     | total number of processed events: 400 (read)
[2026-01-29 18:42:32] 2026-01-29 23:38:42,443 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6985859191/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 18:42:32] 2026-01-29 23:38:42,444 | INFO     | extracted standard info from prmon json
[2026-01-29 18:42:32] 2026-01-29 23:38:42,444 | INFO     | extracted standard memory fields from prmon json
[2026-01-29 18:42:32] 2026-01-29 23:38:42,444 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-29 18:42:32] 2026-01-29 23:38:42,446 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-29 18:42:32] 2026-01-29 23:38:42,446 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-29 18:42:32] 2026-01-29 23:38:42,527 | INFO     | fitting pss+swap vs Time
[2026-01-29 18:42:32] 2026-01-29 23:38:42,546 | INFO     | sum of square deviations: 378784327684.1167
[2026-01-29 18:42:32] 2026-01-29 23:38:42,729 | INFO     | sum of deviations: -300452858167.1349
[2026-01-29 18:42:32] 2026-01-29 23:38:42,729 | INFO     | mean x: 1769697288.6108513
[2026-01-29 18:42:32] 2026-01-29 23:38:42,729 | INFO     | mean y: 2610715.1150608044
[2026-01-29 18:42:32] 2026-01-29 23:38:42,730 | INFO     | intersect: 1406339881.2731018
[2026-01-29 18:42:32] 2026-01-29 23:38:42,731 | INFO     | chi2: 3.9545113121620346
[2026-01-29 18:42:32] 2026-01-29 23:38:42,733 | INFO     | sum of square deviations: 373494475313.8402
[2026-01-29 18:42:32] 2026-01-29 23:38:42,961 | INFO     | monitor loop #2857: job 0:6985859191 is in state 'finished'
[2026-01-29 18:42:32] 2026-01-29 23:38:42,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-29 18:42:32] 2026-01-29 23:38:42,962 | INFO     | sum of deviations: -153004909747.32166
[2026-01-29 18:42:32] 2026-01-29 23:38:42,962 | INFO     | mean x: 1769697136.119361
[2026-01-29 18:42:32] 2026-01-29 23:38:42,962 | INFO     | mean y: 2614953.8214285714
[2026-01-29 18:42:32] 2026-01-29 23:38:42,963 | INFO     | intersect: 727585116.6719276
[2026-01-29 18:42:32] 2026-01-29 23:38:42,964 | INFO     | chi2: 2.434213327345805
[2026-01-29 18:42:32] 2026-01-29 23:38:42,964 | INFO     | current chi2=2.434213327345805 (change=38.44464877722257 %)
[2026-01-29 18:42:32] 2026-01-29 23:38:42,967 | INFO     | sum of square deviations: 368253722226.91425
[2026-01-29 18:42:32] 2026-01-29 23:38:43,130 | INFO     | sum of deviations: -154983952807.082
[2026-01-29 18:42:32] 2026-01-29 23:38:43,130 | INFO     | mean x: 1769696983.6222851
[2026-01-29 18:42:32] 2026-01-29 23:38:43,131 | INFO     | mean y: 2614896.2322946177
[2026-01-29 18:42:32] 2026-01-29 23:38:43,131 | INFO     | intersect: 747412890.7615836
[2026-01-29 18:42:32] 2026-01-29 23:38:43,156 | INFO     | chi2: 2.4333057583414757
[2026-01-29 18:42:32] 2026-01-29 23:38:43,157 | INFO     | current chi2=2.4333057583414757 (change=0.03728387295121695 %)
[2026-01-29 18:42:32] 2026-01-29 23:38:43,157 | INFO     | right removable region: 1058
[2026-01-29 18:42:32] 2026-01-29 23:38:43,158 | INFO     | sum of square deviations: 373493033014.87164
[2026-01-29 18:42:32] 2026-01-29 23:38:43,238 | INFO     | time since job start (65255s) is within the limit (349056.0s)
[2026-01-29 18:42:32] 2026-01-29 23:38:43,323 | INFO     | sum of deviations: -538157317551.5831
[2026-01-29 18:42:32] 2026-01-29 23:38:43,342 | INFO     | mean x: 1769697441.1231203
[2026-01-29 18:42:32] 2026-01-29 23:38:43,343 | INFO     | mean y: 2617557.9586466164
[2026-01-29 18:42:32] 2026-01-29 23:38:43,343 | INFO     | intersect: 2552532934.1707587
[2026-01-29 18:42:32] 2026-01-29 23:38:43,344 | INFO     | chi2: 1.9882435719544231
[2026-01-29 18:42:32] 2026-01-29 23:38:43,344 | INFO     | current chi2=1.9882435719544231 (change=49.72214225713269 %)
[2026-01-29 18:42:32] 2026-01-29 23:38:43,346 | INFO     | sum of square deviations: 368251422004.1092
[2026-01-29 18:42:32] 2026-01-29 23:38:43,504 | INFO     | sum of deviations: -609812679948.9325
[2026-01-29 18:42:32] 2026-01-29 23:38:43,504 | INFO     | mean x: 1769697593.6326723
[2026-01-29 18:42:32] 2026-01-29 23:38:43,504 | INFO     | mean y: 2619641.6685552406
[2026-01-29 18:42:32] 2026-01-29 23:38:43,504 | INFO     | intersect: 2933182750.9680343
[2026-01-29 18:42:32] 2026-01-29 23:38:43,506 | INFO     | chi2: 1.8147510985920832
[2026-01-29 18:42:32] 2026-01-29 23:38:43,506 | INFO     | current chi2=1.8147510985920832 (change=8.725916472688436 %)
[2026-01-29 18:42:32] 2026-01-29 23:38:43,506 | INFO     | left removable region: 20
[2026-01-29 18:42:32] 2026-01-29 23:38:43,522 | INFO     | sum of square deviations: 346774632186.77167
[2026-01-29 18:42:32] 2026-01-29 23:38:43,662 | INFO     | sum of deviations: -498065051386.7219
[2026-01-29 18:42:32] 2026-01-29 23:38:43,662 | INFO     | mean x: 1769697563.1589596
[2026-01-29 18:42:32] 2026-01-29 23:38:43,662 | INFO     | mean y: 2624997.7013487476
[2026-01-29 18:42:32] 2026-01-29 23:38:43,662 | INFO     | intersect: 2544404083.9494786
[2026-01-29 18:42:32] 2026-01-29 23:38:43,664 | INFO     | chi2: 0.21005897452720776
[2026-01-29 18:42:32] 2026-01-29 23:38:43,664 | INFO     | current memory leak: -1.44 B/s (using 1038 data points, chi2=0.21)
[2026-01-29 18:42:32] 2026-01-29 23:38:43,667 | INFO     | could have reported an average CPU frequency of 2590 MHz (39 samples)
[2026-01-29 18:42:32] 2026-01-29 23:38:43,667 | INFO     | ..............................
[2026-01-29 18:42:32] 2026-01-29 23:38:43,667 | INFO     | . Timing measurements:
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . get job = 0 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . initial setup = 3 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . payload setup = 23 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . stage-in = 0 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . payload execution = 65205 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . stage-out = 8 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | . log creation = 1 s
[2026-01-29 18:42:32] 2026-01-29 23:38:43,668 | INFO     | ..............................
[2026-01-29 18:42:32] 2026-01-29 23:38:44,745 | INFO     | 
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | job summary report
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | --------------------------------------------------
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | PanDA job id: 6985859191
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | task id: 48317872
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | errors: (none)
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-29 18:42:32] 2026-01-29 23:38:44,746 | INFO     | pilot state: finished 
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | transexitcode: 0
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | exeerrorcode: 0
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | exeerrordiag: 
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | exitcode: 0
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | exitmsg: OK
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | cpuconsumptiontime: 52223 s
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | nevents: 400
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | neventsw: 0
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | pid: 740274
[2026-01-29 18:42:32] 2026-01-29 23:38:44,747 | INFO     | pgrp: 740274
[2026-01-29 18:42:32] 2026-01-29 23:38:44,748 | INFO     | corecount: 10
[2026-01-29 18:42:32] 2026-01-29 23:38:44,748 | INFO     | event service: False
[2026-01-29 18:42:32] 2026-01-29 23:38:44,748 | INFO     | sizes: {0: 2283801, 1: 2284262, 65234: 2335511, 65235: 2335510, 65246: 2345459, 65249: 2345515, 65254: 2345837}
[2026-01-29 18:42:32] 2026-01-29 23:38:44,748 | INFO     | --------------------------------------------------
[2026-01-29 18:42:32] 2026-01-29 23:38:44,748 | INFO     | 
[2026-01-29 18:42:32] 2026-01-29 23:38:44,748 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-29 18:42:32] 2026-01-29 23:38:44,840 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,840 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,840 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,842 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 18:42:32] 2026-01-29 23:38:44,843 | INFO     | job 6985859191 has completed (purged errors)
[2026-01-29 18:42:32] 2026-01-29 23:38:44,843 | INFO     | overall cleanup function is called
[2026-01-29 18:42:32] 2026-01-29 23:38:45,863 | INFO     | --- collectZombieJob: --- 10, [740274]
[2026-01-29 18:42:32] 2026-01-29 23:38:45,864 | INFO     | zombie collector waiting for pid 740274
[2026-01-29 18:42:32] 2026-01-29 23:38:45,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 18:42:32] 2026-01-29 23:38:45,864 | INFO     | collected zombie processes
[2026-01-29 18:42:32] 2026-01-29 23:38:45,864 | INFO     | will attempt to kill all subprocesses of pid=740274
[2026-01-29 18:42:32] 2026-01-29 23:38:47,606 | INFO     | process IDs to be killed: [740274] (in reverse order)
[2026-01-29 18:42:32] 2026-01-29 23:38:48,584 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 18:42:32] 2026-01-29 23:38:48,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 18:42:32] 2026-01-29 23:38:48,688 | INFO     | did not find any defunct processes belonging to 740274
[2026-01-29 18:42:32] 2026-01-29 23:38:48,777 | INFO     | did not find any defunct processes belonging to 740274
[2026-01-29 18:42:32] 2026-01-29 23:38:48,777 | INFO     | ready for new job
[2026-01-29 18:42:32] 2026-01-29 23:38:48,777 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 18:42:32] 2026-01-29 23:38:48,802 | INFO     | **************************************
[2026-01-29 18:42:32] 2026-01-29 23:38:48,802 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 18:42:32] 2026-01-29 23:38:48,802 | INFO     | **************************************
[2026-01-29 18:42:32] 2026-01-29 23:38:48,802 | INFO     | 
[2026-01-29 18:42:32] 2026-01-29 23:38:48,826 | INFO     | architecture information:
[2026-01-29 18:42:32] 2026-01-29 23:38:48,829 | INFO     | executing command: cat /etc/os-release
[2026-01-29 18:42:32] 2026-01-29 23:38:48,906 | INFO     | cat /etc/os-release:
[2026-01-29 18:42:32] NAME="CentOS Linux"
[2026-01-29 18:42:32] VERSION="7 (Core)"
[2026-01-29 18:42:32] ID="centos"
[2026-01-29 18:42:32] ID_LIKE="rhel fedora"
[2026-01-29 18:42:32] VERSION_ID="7"
[2026-01-29 18:42:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 18:42:32] ANSI_COLOR="0;31"
[2026-01-29 18:42:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 18:42:32] HOME_URL="https://www.centos.org/"
[2026-01-29 18:42:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 18:42:32] 
[2026-01-29 18:42:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 18:42:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 18:42:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 18:42:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 18:42:32] 
[2026-01-29 18:42:32] 2026-01-29 23:38:48,906 | INFO     | **************************************
[2026-01-29 18:42:32] 2026-01-29 23:38:49,411 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-29 18:42:32] 2026-01-29 23:38:49,555 | INFO     | sufficient remaining disk space (72737619968 B)
[2026-01-29 18:42:32] 2026-01-29 23:38:49,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 18:42:32] 2026-01-29 23:38:49,555 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 18:42:32] 2026-01-29 23:38:49,555 | INFO     | update_server=False
[2026-01-29 18:42:32] 2026-01-29 23:38:49,556 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 18:42:32] 2026-01-29 23:38:49,556 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 18:42:32] 2026-01-29 23:38:49,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 18:42:32] 2026-01-29 23:38:49,566 | INFO     | aborting loop
[2026-01-29 18:42:32] 2026-01-29 23:38:49,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 18:42:32] 2026-01-29 23:38:49,671 | INFO     | all data control threads have been joined
[2026-01-29 18:42:32] 2026-01-29 23:38:50,142 | INFO     | all payload control threads have been joined
[2026-01-29 18:42:32] 2026-01-29 23:38:50,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 18:42:32] 2026-01-29 23:38:50,562 | INFO     | [job] retrieve thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:50,563 | INFO     | [job] queue monitor thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:50,575 | INFO     | [job] job monitor thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:50,678 | INFO     | [data] control thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:50,770 | INFO     | all job control threads have been joined
[2026-01-29 18:42:32] 2026-01-29 23:38:50,792 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:50,800 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,149 | INFO     | [payload] control thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,211 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,379 | INFO     | [payload] validate_post thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,580 | INFO     | [payload] failed_post thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,580 | INFO     | [data] copytool_out thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,649 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,777 | INFO     | [job] control thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,883 | INFO     | [job] validate thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:51,883 | INFO     | [data] copytool_in thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:38:54,247 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 18:42:32] 2026-01-29 23:39:17,944 | INFO     | PID=732137 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-29 18:42:32] 2026-01-29 23:39:17,944 | INFO     | .. there are 23 such processes running
[2026-01-29 18:42:32] 2026-01-29 23:39:17,945 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 18:42:32] 2026-01-29 23:39:17,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 18:42:32] 2026-01-29 23:39:17,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 18:42:32] 2026-01-29 23:39:18,592 | INFO     | [monitor] cgroup control has ended
[2026-01-29 18:42:32] 2026-01-29 23:39:20,468 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139972595914560)>', '<ExcThread(monitor, started 139971960755968)>']
[2026-01-29 18:42:32] 2026-01-29 23:39:20,963 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 18:42:32] 2026-01-29 23:39:20,964 | INFO     | [monitor] control thread has ended
[2026-01-29 18:42:32] 2026-01-29 23:39:25,493 | INFO     | all workflow threads have been joined
[2026-01-29 18:42:32] 2026-01-29 23:39:25,494 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 18:42:32] 2026-01-29 23:39:25,494 | INFO     | traces error code: 0
[2026-01-29 18:42:32] 2026-01-29 23:39:25,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 18:42:32] 2026-01-29 23:39:26,226 [wrapper] ==== pilot stdout END ====
[2026-01-29 18:42:32] 2026-01-29 23:39:26,229 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 18:42:32] 2026-01-29 23:39:26,233 [wrapper] pilotpid: 732137
[2026-01-29 18:42:32] 2026-01-29 23:39:26,235 [wrapper] Pilot exit status: 0
[2026-01-29 18:42:32] 2026-01-29 23:39:26,363 [wrapper] pandaids: 6985859191 6985859191
[2026-01-29 18:42:32] 2026-01-29 23:39:26,589 [wrapper] cleanup supervisor_pilot 3584456 732138
[2026-01-29 18:42:32] 2026-01-29 23:39:26,594 [wrapper] Test setup, not cleaning
[2026-01-29 18:42:32] 2026-01-29 23:39:26,606 [wrapper] apfmon messages muted
[2026-01-29 18:42:32] 2026-01-29 23:39:26,612 [wrapper] ==== wrapper stdout END ====
[2026-01-29 18:42:32] 2026-01-29 23:39:26,658 [wrapper] ==== wrapper stderr END ====
[2026-01-29 18:42:32]  *** Error codes and diagnostics ***
[2026-01-29 18:42:32]     "exeErrorCode": 0,
[2026-01-29 18:42:32]     "exeErrorDiag": "",
[2026-01-29 18:42:32]     "pilotErrorCode": 0,
[2026-01-29 18:42:32]     "pilotErrorDiag": "",
[2026-01-29 18:42:32]  *** Listing of results directory ***
[2026-01-29 18:42:32] total 1169396
[2026-01-29 18:42:32] drwx------. 5 boincer umatlas      4096 Jan 14 05:00 pilot3
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas    584422 Jan 28 10:24 pilot3.tar.gz
[2026-01-29 18:42:32] -rwx------. 1 boincer umatlas     36322 Jan 28 10:24 runpilot2-wrapper.sh
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas      5111 Jan 28 10:24 queuedata.json
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas       100 Jan 29 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 18:42:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 29 00:01 run_atlas
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas       105 Jan 29 00:01 job.xml
[2026-01-29 18:42:32] -rw-r--r--. 3 boincer umatlas 496343221 Jan 29 00:01 EVNT.48317869._000151.pool.root.1
[2026-01-29 18:42:32] -rw-r--r--. 3 boincer umatlas 496343221 Jan 29 00:01 ATLAS.root_0
[2026-01-29 18:42:32] -rw-r--r--. 2 boincer umatlas     15845 Jan 29 00:01 start_atlas.sh
[2026-01-29 18:42:32] drwxrwx--x. 2 boincer umatlas      4096 Jan 29 00:01 shared
[2026-01-29 18:42:32] -rw-r--r--. 2 boincer umatlas    597758 Jan 29 00:01 input.tar.gz
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas         0 Jan 29 00:01 boinc_lockfile
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas      2515 Jan 29 00:30 pandaJob.out
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas        57 Jan 29 00:30 setup.sh.local
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas   1005755 Jan 29 00:31 agis_schedconf.cvmfs.json
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas       439 Jan 29 00:31 workernode_map.json
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas 185523663 Jan 29 18:36 HITS.48317872._007570.pool.root.1
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas       531 Jan 29 18:36 boinc_task_state.xml
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas      6707 Jan 29 18:37 init_data.xml
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas      1066 Jan 29 18:38 memory_monitor_summary.json
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas   1511668 Jan 29 18:38 agis_ddmendpoints.agis.ALL.json
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas   1047641 Jan 29 18:38 log.48317872._007570.job.log.tgz.1
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas      6413 Jan 29 18:38 heartbeat.json
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas        96 Jan 29 18:39 pilot_heartbeat.json
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas      4819 Jan 29 18:39 pilotlog.txt
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas   6603634 Jan 29 18:39 log.48317872._007570.job.log.1
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas       357 Jan 29 18:39 output.list
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas       620 Jan 29 18:39 runtime_log
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas   7669760 Jan 29 18:39 result.tar.gz
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas      9419 Jan 29 18:39 runtime_log.err
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas       786 Jan 29 18:39 9MSLDmOaM58n9Rq4apOajLDm4fhM0noT9bVooX4SDmoLGKDmphbG4n.diag
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas      8192 Jan 29 18:42 boinc_mmap_file
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas        27 Jan 29 18:42 wrapper_checkpoint.txt
[2026-01-29 18:42:32] -rw-r--r--. 1 boincer umatlas     23283 Jan 29 18:42 stderr.txt
[2026-01-29 18:42:32] HITS file was successfully produced:
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas 185523663 Jan 29 18:36 shared/HITS.pool.root.1
[2026-01-29 18:42:32]  *** Contents of shared directory: ***
[2026-01-29 18:42:32] total 673988
[2026-01-29 18:42:32] -rw-r--r--. 3 boincer umatlas 496343221 Jan 29 00:01 ATLAS.root_0
[2026-01-29 18:42:32] -rw-r--r--. 2 boincer umatlas     15845 Jan 29 00:01 start_atlas.sh
[2026-01-29 18:42:32] -rw-r--r--. 2 boincer umatlas    597758 Jan 29 00:01 input.tar.gz
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas 185523663 Jan 29 18:36 HITS.pool.root.1
[2026-01-29 18:42:32] -rw-------. 1 boincer umatlas   7669760 Jan 29 18:39 result.tar.gz
18:42:34 (721111): run_atlas exited; CPU time 54264.424405
18:42:34 (721111): called boinc_finish(0)

</stderr_txt>
]]>

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