Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
07:54:01 (588405): wrapper (7.7.26015): starting
07:54:01 (588405): wrapper: running run_atlas (--nthreads 12)
[2026-01-29 07:54:01] Arguments: --nthreads 12
[2026-01-29 07:54:01] Threads: 12
[2026-01-29 07:54:01] Checking for CVMFS
[2026-01-29 07:54:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 07:54:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 07:54:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 07:54:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 07:54:01] 2.13.3.0 587923 0 24772 155626 3 4 3312281 4096000 19 130560 0 737 100.000 0 0 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-29 07:54:01] CVMFS is ok
[2026-01-29 07:54:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 07:54:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 07:54:01] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-29 07:54:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-29 07:54:01] Further information can be found at the LHC@home message board.
[2026-01-29 07:54:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 07:54:01] Checking for apptainer binary...
[2026-01-29 07:54:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 07:54:01] Running /usr/bin/apptainer --version
[2026-01-29 07:54:01] apptainer version 1.4.5
[2026-01-29 07:54:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 07:54:01] test-run
[2026-01-29 07:54:01] apptainer works
[2026-01-29 07:54:01] Set ATHENA_PROC_NUMBER=12
[2026-01-29 07:54:01] Set ATHENA_CORE_NUMBER=12
[2026-01-29 07:54:01] Starting ATLAS job with PandaID=6986149347
[2026-01-29 07:54:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/29 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 08:23:22]  *** The last 200 lines of the pilot log: ***
[2026-01-29 08:23:22]  filetype=log
[2026-01-29 08:23:22]  guid=f6d025b0-5ee4-40f0-b5ed-a31b9f1db7ef
[2026-01-29 08:23:22]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-29 08:23:22]  is_altstaged=None
[2026-01-29 08:23:22]  is_tar=False
[2026-01-29 08:23:22]  lfn=log.48317931._004606.job.log.tgz.1
[2026-01-29 08:23:22]  mtime=0
[2026-01-29 08:23:22]  protocol_id=None
[2026-01-29 08:23:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-29 08:23:22]  replicas=None
[2026-01-29 08:23:22]  scope=mc23_13p6TeV
[2026-01-29 08:23:22]  status=None
[2026-01-29 08:23:22]  status_code=0
[2026-01-29 08:23:22]  storage_token=
[2026-01-29 08:23:22]  surl=/var/lib/boinc-client/slots/29/PanDA_Pilot-6986149347/log.48317931._004606.job.log.tgz.1
[2026-01-29 08:23:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/d0/log.48317931._004606.job.log.tgz.1
[2026-01-29 08:23:22]  workdir=None
[2026-01-29 08:23:22] ]
[2026-01-29 08:23:22] 2026-01-29 08:22:48,792 | INFO     | transferring file log.48317931._004606.job.log.tgz.1 from /var/lib/boinc-client/slots/29/PanDA_Pilot-6986149347/log.48317931._004606.job.log.tgz.1 to /var/lib/boin
[2026-01-29 08:23:22] 2026-01-29 08:22:48,792 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/29/PanDA_Pilot-6986149347/log.48317931._004606.job.log.tgz.1 /var/lib/boinc-client/slots/29/log.4831
[2026-01-29 08:23:22] 2026-01-29 08:22:48,800 | INFO     | adding to output.list: log.48317931._004606.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/d0/log.48317931._004606.job.log.tg
[2026-01-29 08:23:22] 2026-01-29 08:22:48,800 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-29 08:23:22] 2026-01-29 08:22:48,800 | INFO     | summary of transferred files:
[2026-01-29 08:23:22] 2026-01-29 08:22:48,800 | INFO     |  -- lfn=log.48317931._004606.job.log.tgz.1, status_code=0, status=transferred
[2026-01-29 08:23:22] 2026-01-29 08:22:48,801 | INFO     | stage-out finished correctly
[2026-01-29 08:23:22] 2026-01-29 08:22:48,820 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-29 08:23:22] 2026-01-29 08:22:49,443 | INFO     | time since job start (1719s) is within the limit (349056.0s)
[2026-01-29 08:23:22] 2026-01-29 08:22:50,046 | INFO     | monitor loop #135: job 0:6986149347 is in state 'finished'
[2026-01-29 08:23:22] 2026-01-29 08:22:50,046 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,373 | INFO     | job 6986149347 has state=finished
[2026-01-29 08:23:22] 2026-01-29 08:22:51,374 | INFO     | preparing for final server update for job 6986149347 in state='finished'
[2026-01-29 08:23:22] 2026-01-29 08:22:51,374 | INFO     | reading metadata from: /var/lib/boinc-client/slots/29/PanDA_Pilot-6986149347/jobReport.json
[2026-01-29 08:23:22] 2026-01-29 08:22:51,375 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/29/workernode_map.json
[2026-01-29 08:23:22] 2026-01-29 08:22:51,375 | INFO     | this job has now completed (state=finished)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,375 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,375 | INFO     | log transfer has been attempted: DONE
[2026-01-29 08:23:22] 2026-01-29 08:22:51,375 | INFO     | job 6986149347 has finished - writing final server update
[2026-01-29 08:23:22] 2026-01-29 08:22:51,375 | INFO     | total number of processed events: 400 (read)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,377 | INFO     | using path: /var/lib/boinc-client/slots/29/PanDA_Pilot-6986149347/memory_monitor_summary.json (trf name=prmon)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,377 | INFO     | extracted standard info from prmon json
[2026-01-29 08:23:22] 2026-01-29 08:22:51,377 | INFO     | extracted standard memory fields from prmon json
[2026-01-29 08:23:22] 2026-01-29 08:22:51,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-29 08:23:22] 2026-01-29 08:22:51,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-29 08:23:22] 2026-01-29 08:22:51,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | fitting pss+swap vs Time
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | sum of square deviations: 2865170.0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | sum of deviations: 135608917.0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | mean x: 1769674180.0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | mean y: 2887159.8571428573
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | intersect: -83756051748.7113
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | chi2: 0.0009924241618991664
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | current memory leak: 47.33 B/s (using 21 data points, chi2=0.00)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,378 | INFO     | could have reported an average CPU frequency of 4291 MHz (4 samples)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | ..............................
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . Timing measurements:
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . get job = 0 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . initial setup = 3 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . payload setup = 1 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . stage-in = 0 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . payload execution = 1701 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . stage-out = 0 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | . log creation = 0 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,379 | INFO     | ..............................
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | 
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | job summary report
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | --------------------------------------------------
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | PanDA job id: 6986149347
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | task id: 48317931
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | errors: (none)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | pilot state: finished 
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | transexitcode: 0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | exeerrorcode: 0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | exeerrordiag: 
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | exitcode: 0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | exitmsg: OK
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | cpuconsumptiontime: 16518 s
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | nevents: 400
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | neventsw: 0
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | pid: 605159
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | pgrp: 605159
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | corecount: 12
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | event service: False
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | sizes: {0: 2283920, 1: 2284182, 11: 2284210, 1706: 2309087, 1707: 2318157, 1710: 2318295}
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | --------------------------------------------------
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | 
[2026-01-29 08:23:22] 2026-01-29 08:22:51,402 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/29
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | job 6986149347 has completed (purged errors)
[2026-01-29 08:23:22] 2026-01-29 08:22:51,410 | INFO     | overall cleanup function is called
[2026-01-29 08:23:22] 2026-01-29 08:22:52,416 | INFO     | --- collectZombieJob: --- 10, [605159]
[2026-01-29 08:23:22] 2026-01-29 08:22:52,416 | INFO     | zombie collector waiting for pid 605159
[2026-01-29 08:23:22] 2026-01-29 08:22:52,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 08:23:22] 2026-01-29 08:22:52,416 | INFO     | collected zombie processes
[2026-01-29 08:23:22] 2026-01-29 08:22:52,416 | INFO     | will attempt to kill all subprocesses of pid=605159
[2026-01-29 08:23:22] 2026-01-29 08:22:52,440 | INFO     | process IDs to be killed: [605159] (in reverse order)
[2026-01-29 08:23:22] 2026-01-29 08:22:52,460 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 08:23:22] 2026-01-29 08:22:52,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 08:23:22] 2026-01-29 08:22:52,461 | INFO     | did not find any defunct processes belonging to 605159
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | did not find any defunct processes belonging to 605159
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | ready for new job
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | **************************************
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | **************************************
[2026-01-29 08:23:22] 2026-01-29 08:22:52,462 | INFO     | 
[2026-01-29 08:23:22] 2026-01-29 08:22:52,463 | INFO     | pilot is running in a VM
[2026-01-29 08:23:22] 2026-01-29 08:22:52,463 | INFO     | architecture information:
[2026-01-29 08:23:22] 2026-01-29 08:22:52,463 | INFO     | executing command: cat /etc/os-release
[2026-01-29 08:23:22] 2026-01-29 08:22:52,468 | INFO     | cat /etc/os-release:
[2026-01-29 08:23:22] NAME="CentOS Linux"
[2026-01-29 08:23:22] VERSION="7 (Core)"
[2026-01-29 08:23:22] ID="centos"
[2026-01-29 08:23:22] ID_LIKE="rhel fedora"
[2026-01-29 08:23:22] VERSION_ID="7"
[2026-01-29 08:23:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 08:23:22] ANSI_COLOR="0;31"
[2026-01-29 08:23:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 08:23:22] HOME_URL="https://www.centos.org/"
[2026-01-29 08:23:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 08:23:22] 
[2026-01-29 08:23:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 08:23:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 08:23:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 08:23:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 08:23:22] 
[2026-01-29 08:23:22] 2026-01-29 08:22:52,468 | INFO     | **************************************
[2026-01-29 08:23:22] 2026-01-29 08:22:52,970 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/29
[2026-01-29 08:23:22] 2026-01-29 08:22:52,978 | INFO     | sufficient remaining disk space (64970817536 B)
[2026-01-29 08:23:22] 2026-01-29 08:22:52,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 08:23:22] 2026-01-29 08:22:52,978 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 08:23:22] 2026-01-29 08:22:52,978 | INFO     | update_server=False
[2026-01-29 08:23:22] 2026-01-29 08:22:52,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 08:23:22] 2026-01-29 08:22:52,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 08:23:22] 2026-01-29 08:22:53,049 | INFO     | all payload control threads have been joined
[2026-01-29 08:23:22] 2026-01-29 08:22:53,445 | INFO     | all data control threads have been joined
[2026-01-29 08:23:22] 2026-01-29 08:22:53,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 08:23:22] 2026-01-29 08:22:53,553 | INFO     | aborting loop
[2026-01-29 08:23:22] 2026-01-29 08:22:53,983 | INFO     | [job] retrieve thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:53,985 | INFO     | [job] queue monitor thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:54,054 | INFO     | [payload] control thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:54,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 08:23:22] 2026-01-29 08:22:54,448 | INFO     | all job control threads have been joined
[2026-01-29 08:23:22] 2026-01-29 08:22:54,450 | INFO     | [data] control thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:54,558 | INFO     | [job] job monitor thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:54,748 | INFO     | [payload] failed_post thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:54,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 08:23:22] 2026-01-29 08:22:54,910 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:54,995 | INFO     | [job] validate thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:55,157 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:55,187 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:55,290 | INFO     | [data] copytool_in thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:55,341 | INFO     | [payload] validate_post thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:55,454 | INFO     | [job] control thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:56,333 | INFO     | [data] copytool_out thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:22:58,847 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:23:03,499 | INFO     | job.realtimelogging is not enabled
[2026-01-29 08:23:22] 2026-01-29 08:23:04,504 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 08:23:22] 2026-01-29 08:23:13,222 | INFO     | [monitor] cgroup control has ended
[2026-01-29 08:23:22] 2026-01-29 08:23:14,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129356134631232)>', '<ExcThread(monitor, started 129355774662400)>']
[2026-01-29 08:23:22] 2026-01-29 08:23:19,128 | INFO     | all workflow threads have been joined
[2026-01-29 08:23:22] 2026-01-29 08:23:19,128 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 08:23:22] 2026-01-29 08:23:19,128 | INFO     | traces error code: 0
[2026-01-29 08:23:22] 2026-01-29 08:23:19,128 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 08:23:22] 2026-01-29 08:23:22,542 | INFO     | PID=596006 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-29 08:23:22] 2026-01-29 08:23:22,542 | INFO     | .. there are 2 such processes running
[2026-01-29 08:23:22] 2026-01-29 08:23:22,543 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 08:23:22] 2026-01-29 08:23:22,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 08:23:22] 2026-01-29 08:23:22,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 08:23:22] 2026-01-29 08:23:22,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 08:23:22] 2026-01-29 08:23:22,543 | INFO     | [monitor] control thread has ended
[2026-01-29 08:23:22] 2026-01-29 08:23:22,579 [wrapper] ==== pilot stdout END ====
[2026-01-29 08:23:22] 2026-01-29 08:23:22,580 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 08:23:22] 2026-01-29 08:23:22,581 [wrapper] pilotpid: 596006
[2026-01-29 08:23:22] 2026-01-29 08:23:22,582 [wrapper] Pilot exit status: 0
[2026-01-29 08:23:22] 2026-01-29 08:23:22,586 [wrapper] pandaids: 6986149347
[2026-01-29 08:23:22] 2026-01-29 08:23:22,597 [wrapper] cleanup supervisor_pilot  614387 596008
[2026-01-29 08:23:22] 2026-01-29 08:23:22,598 [wrapper] Test setup, not cleaning
[2026-01-29 08:23:22] 2026-01-29 08:23:22,598 [wrapper] apfmon messages muted
[2026-01-29 08:23:22] 2026-01-29 08:23:22,599 [wrapper] ==== wrapper stdout END ====
[2026-01-29 08:23:22] 2026-01-29 08:23:22,600 [wrapper] ==== wrapper stderr END ====
[2026-01-29 08:23:22]  *** Error codes and diagnostics ***
[2026-01-29 08:23:22]     "exeErrorCode": 0,
[2026-01-29 08:23:22]     "exeErrorDiag": "",
[2026-01-29 08:23:22]     "pilotErrorCode": 0,
[2026-01-29 08:23:22]     "pilotErrorDiag": "",
[2026-01-29 08:23:22]  *** Listing of results directory ***
[2026-01-29 08:23:22] total 664072
[2026-01-29 08:23:22] -rwx------ 1 boinc boinc     36322 Jan 28 17:06 runpilot2-wrapper.sh
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc      5111 Jan 28 17:08 queuedata.json
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc    584422 Jan 28 17:08 pilot3.tar.gz
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc       100 Jan 29 07:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 08:23:22] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 07:54 run_atlas
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc       105 Jan 29 07:54 job.xml
[2026-01-29 08:23:22] -rw-r--r-- 2 boinc boinc     15845 Jan 29 07:54 start_atlas.sh
[2026-01-29 08:23:22] drwxrwx--x 2 boinc boinc      4096 Jan 29 07:54 shared
[2026-01-29 08:23:22] -rw-r--r-- 2 boinc boinc    597759 Jan 29 07:54 input.tar.gz
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc      7994 Jan 29 07:54 init_data.xml
[2026-01-29 08:23:22] -rw-r--r-- 2 boinc boinc 494518992 Jan 29 07:54 EVNT.48317929._000036.pool.root.1
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc         0 Jan 29 07:54 boinc_lockfile
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc      2507 Jan 29 07:54 pandaJob.out
[2026-01-29 08:23:22] -rw------- 1 boinc boinc   1005755 Jan 29 07:54 agis_schedconf.cvmfs.json
[2026-01-29 08:23:22] -rw------- 1 boinc boinc   1516246 Jan 29 07:54 agis_ddmendpoints.agis.ALL.json
[2026-01-29 08:23:22] -rw------- 1 boinc boinc       420 Jan 29 07:54 workernode_map.json
[2026-01-29 08:23:22] drwx------ 5 boinc boinc      4096 Jan 29 07:54 pilot3
[2026-01-29 08:23:22] -rw------- 1 boinc boinc 180250192 Jan 29 08:22 HITS.48317931._004606.pool.root.1
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc       530 Jan 29 08:22 boinc_task_state.xml
[2026-01-29 08:23:22] -rw------- 1 boinc boinc      1018 Jan 29 08:22 memory_monitor_summary.json
[2026-01-29 08:23:22] -rw------- 1 boinc boinc    357890 Jan 29 08:22 log.48317931._004606.job.log.tgz.1
[2026-01-29 08:23:22] -rw------- 1 boinc boinc      6271 Jan 29 08:22 heartbeat.json
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc        27 Jan 29 08:23 wrapper_checkpoint.txt
[2026-01-29 08:23:22] -rw------- 1 boinc boinc       821 Jan 29 08:23 pilotlog.txt
[2026-01-29 08:23:22] -rw------- 1 boinc boinc        95 Jan 29 08:23 pilot_heartbeat.json
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc      8192 Jan 29 08:23 boinc_mmap_file
[2026-01-29 08:23:22] -rw------- 1 boinc boinc    292011 Jan 29 08:23 log.48317931._004606.job.log.1
[2026-01-29 08:23:22] -rw------- 1 boinc boinc       357 Jan 29 08:23 output.list
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc       620 Jan 29 08:23 runtime_log
[2026-01-29 08:23:22] -rw------- 1 boinc boinc    665600 Jan 29 08:23 result.tar.gz
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc      8905 Jan 29 08:23 runtime_log.err
[2026-01-29 08:23:22] -rw------- 1 boinc boinc       642 Jan 29 08:23 fM9MDmGBO58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmiGKDmEUW8rn.diag
[2026-01-29 08:23:22] -rw-r--r-- 1 boinc boinc     21423 Jan 29 08:23 stderr.txt
[2026-01-29 08:23:22] HITS file was successfully produced:
[2026-01-29 08:23:22] -rw------- 1 boinc boinc 180250192 Jan 29 08:22 shared/HITS.pool.root.1
[2026-01-29 08:23:22]  *** Contents of shared directory: ***
[2026-01-29 08:23:22] total 660220
[2026-01-29 08:23:22] -rw-r--r-- 2 boinc boinc     15845 Jan 29 07:54 start_atlas.sh
[2026-01-29 08:23:22] -rw-r--r-- 2 boinc boinc    597759 Jan 29 07:54 input.tar.gz
[2026-01-29 08:23:22] -rw-r--r-- 2 boinc boinc 494518992 Jan 29 07:54 ATLAS.root_0
[2026-01-29 08:23:22] -rw------- 1 boinc boinc 180250192 Jan 29 08:22 HITS.pool.root.1
[2026-01-29 08:23:22] -rw------- 1 boinc boinc    665600 Jan 29 08:23 result.tar.gz
08:23:24 (588405): run_atlas exited; CPU time 16523.488571
08:23:24 (588405): called boinc_finish(0)

</stderr_txt>
]]>

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