Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:52:10 (1832348): wrapper (7.7.26015): starting
15:52:10 (1832348): wrapper: running run_atlas (--nthreads 3)
[2026-01-29 15:52:10] Arguments: --nthreads 3
[2026-01-29 15:52:10] Threads: 3
[2026-01-29 15:52:10] Checking for CVMFS
[2026-01-29 15:52:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-29 15:52:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-29 15:52:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-29 15:52:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-29 15:52:11] 2.9.2.0 1610796 1367 76028 155643 2 50 22993454 36864000 0 130560 0 639482 99.992 27621 5208 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-29 15:52:11] CVMFS is ok
[2026-01-29 15:52:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-29 15:52:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-29 15:52:11] Further information can be found at the LHC@home message board.
[2026-01-29 15:52:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-29 15:52:11] Checking for apptainer binary...
[2026-01-29 15:52:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-29 15:52:11] Running /usr/bin/apptainer --version
[2026-01-29 15:52:11] apptainer version 1.4.1-1.1
[2026-01-29 15:52:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-29 15:52:11] madmaxA273
[2026-01-29 15:52:11] apptainer works
[2026-01-29 15:52:11] Set ATHENA_PROC_NUMBER=3
[2026-01-29 15:52:11] Set ATHENA_CORE_NUMBER=3
[2026-01-29 15:52:11] Starting ATLAS job with PandaID=6986342232
[2026-01-29 15:52:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-29 17:16:40]  *** The last 200 lines of the pilot log: ***
[2026-01-29 17:16:40] 2026-01-29 16:16:09,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | job 6986342232 has completed (purged errors)
[2026-01-29 17:16:40] 2026-01-29 16:16:09,224 | INFO     | overall cleanup function is called
[2026-01-29 17:16:40] 2026-01-29 16:16:10,230 | INFO     | --- collectZombieJob: --- 10, [1840805]
[2026-01-29 17:16:40] 2026-01-29 16:16:10,231 | INFO     | zombie collector waiting for pid 1840805
[2026-01-29 17:16:40] 2026-01-29 16:16:10,231 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-29 17:16:40] 2026-01-29 16:16:10,231 | INFO     | collected zombie processes
[2026-01-29 17:16:40] 2026-01-29 16:16:10,231 | INFO     | will attempt to kill all subprocesses of pid=1840805
[2026-01-29 17:16:40] 2026-01-29 16:16:10,271 | INFO     | process IDs to be killed: [1840805] (in reverse order)
[2026-01-29 17:16:40] 2026-01-29 16:16:10,295 | WARNING  | found no corresponding commands to process id(s)
[2026-01-29 17:16:40] 2026-01-29 16:16:10,295 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-29 17:16:40] 2026-01-29 16:16:10,296 | INFO     | did not find any defunct processes belonging to 1840805
[2026-01-29 17:16:40] 2026-01-29 16:16:10,297 | INFO     | did not find any defunct processes belonging to 1840805
[2026-01-29 17:16:40] 2026-01-29 16:16:10,297 | INFO     | ready for new job
[2026-01-29 17:16:40] 2026-01-29 16:16:10,298 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-29 17:16:40] 2026-01-29 16:16:10,298 | INFO     | **************************************
[2026-01-29 17:16:40] 2026-01-29 16:16:10,298 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-01-29 17:16:40] 2026-01-29 16:16:10,298 | INFO     | **************************************
[2026-01-29 17:16:40] 2026-01-29 16:16:10,298 | INFO     | 
[2026-01-29 17:16:40] 2026-01-29 16:16:10,299 | INFO     | architecture information:
[2026-01-29 17:16:40] 2026-01-29 16:16:10,299 | INFO     | executing command: cat /etc/os-release
[2026-01-29 17:16:40] 2026-01-29 16:16:10,307 | INFO     | cat /etc/os-release:
[2026-01-29 17:16:40] NAME="CentOS Linux"
[2026-01-29 17:16:40] VERSION="7 (Core)"
[2026-01-29 17:16:40] ID="centos"
[2026-01-29 17:16:40] ID_LIKE="rhel fedora"
[2026-01-29 17:16:40] VERSION_ID="7"
[2026-01-29 17:16:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-29 17:16:40] ANSI_COLOR="0;31"
[2026-01-29 17:16:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-29 17:16:40] HOME_URL="https://www.centos.org/"
[2026-01-29 17:16:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-29 17:16:40] 
[2026-01-29 17:16:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-29 17:16:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-29 17:16:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-29 17:16:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-29 17:16:40] 
[2026-01-29 17:16:40] 2026-01-29 16:16:10,307 | INFO     | **************************************
[2026-01-29 17:16:40] 2026-01-29 16:16:10,810 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-29 17:16:40] 2026-01-29 16:16:10,821 | INFO     | sufficient remaining disk space (333976698880 B)
[2026-01-29 17:16:40] 2026-01-29 16:16:10,821 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-29 17:16:40] 2026-01-29 16:16:10,821 | INFO     | current server update state: UPDATING_FINAL
[2026-01-29 17:16:40] 2026-01-29 16:16:10,822 | INFO     | update_server=False
[2026-01-29 17:16:40] 2026-01-29 16:16:10,822 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-29 17:16:40] 2026-01-29 16:16:10,822 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-29 17:16:40] 2026-01-29 16:16:10,822 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-29 17:16:40] 2026-01-29 16:16:10,874 | INFO     | all data control threads have been joined
[2026-01-29 17:16:40] 2026-01-29 16:16:11,316 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-29 17:16:40] 2026-01-29 16:16:11,316 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-29 17:16:40] 2026-01-29 16:16:11,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-29 17:16:40] 2026-01-29 16:16:11,316 | INFO     | will abort loop
[2026-01-29 17:16:40] 2026-01-29 16:16:11,459 | INFO     | all job control threads have been joined
[2026-01-29 17:16:40] 2026-01-29 16:16:11,738 | INFO     | all payload control threads have been joined
[2026-01-29 17:16:40] 2026-01-29 16:16:11,827 | INFO     | [job] retrieve thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:11,827 | INFO     | [job] queue monitor thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:11,880 | INFO     | [data] control thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:11,933 | INFO     | [payload] execute_payloads thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,065 | INFO     | [job] create_data_payload thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,141 | INFO     | [job] validate thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,261 | INFO     | [payload] validate_post thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,317 | INFO     | [job] job monitor thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,383 | INFO     | [payload] validate_pre thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,464 | INFO     | [job] control thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,472 | INFO     | [data] copytool_in thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,743 | INFO     | [payload] control thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:12,827 | INFO     | [data] copytool_out thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:13,108 | INFO     | [payload] failed_post thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:13,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-29 17:16:40] 2026-01-29 16:16:17,829 | INFO     | [data] queue_monitor thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:21,287 | INFO     | job.realtimelogging is not enabled
[2026-01-29 17:16:40] 2026-01-29 16:16:22,293 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-29 17:16:40] 2026-01-29 16:16:25,623 | INFO     | [monitor] cgroup control has ended
[2026-01-29 17:16:40] 2026-01-29 16:16:27,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140406251173696)>', '<ExcThread(monitor, started 140405635020544)>']
[2026-01-29 17:16:40] 2026-01-29 16:16:32,532 | INFO     | all workflow threads have been joined
[2026-01-29 17:16:40] 2026-01-29 16:16:32,533 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-29 17:16:40] 2026-01-29 16:16:32,533 | INFO     | traces error code: 0
[2026-01-29 17:16:40] 2026-01-29 16:16:32,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-29 17:16:40] 2026-01-29 16:16:40,646 | INFO     | PID=1836386 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-29 17:16:40] 2026-01-29 16:16:40,647 | INFO     | found 0 job(s) in 20 queues
[2026-01-29 17:16:40] 2026-01-29 16:16:40,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-29 17:16:40] 2026-01-29 16:16:40,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-29 17:16:40] 2026-01-29 16:16:40,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-29 17:16:40] 2026-01-29 16:16:40,647 | CRITICAL | thread 'MainThread' is not alive
[2026-01-29 17:16:40] 2026-01-29 16:16:40,647 | INFO     | [monitor] control thread has ended
[2026-01-29 17:16:40] 2026-01-29 16:16:40,693 [wrapper] ==== pilot stdout END ====
[2026-01-29 17:16:40] 2026-01-29 16:16:40,695 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-29 17:16:40] 2026-01-29 16:16:40,698 [wrapper] pilotpid: 1836386
[2026-01-29 17:16:40] 2026-01-29 16:16:40,700 [wrapper] Pilot exit status: 0
[2026-01-29 17:16:40] 2026-01-29 16:16:40,707 [wrapper] pandaids: 6986342232
[2026-01-29 17:16:40] 2026-01-29 16:16:40,722 [wrapper] cleanup supervisor_pilot 1845832 1836387
[2026-01-29 17:16:40] 2026-01-29 16:16:40,725 [wrapper] Test setup, not cleaning
[2026-01-29 17:16:40] 2026-01-29 16:16:40,727 [wrapper] apfmon messages muted
[2026-01-29 17:16:40] 2026-01-29 16:16:40,729 [wrapper] ==== wrapper stdout END ====
[2026-01-29 17:16:40] 2026-01-29 16:16:40,732 [wrapper] ==== wrapper stderr END ====
[2026-01-29 17:16:40]  *** Error codes and diagnostics ***
[2026-01-29 17:16:40]     "exeErrorCode": 0,
[2026-01-29 17:16:40]     "exeErrorDiag": "",
[2026-01-29 17:16:40]     "pilotErrorCode": 0,
[2026-01-29 17:16:40]     "pilotErrorDiag": "",
[2026-01-29 17:16:40]  *** Listing of results directory ***
[2026-01-29 17:16:40] total 715724
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc    584422 Jan 28 19:37 pilot3.tar.gz
[2026-01-29 17:16:40] -rwx------ 1 boinc boinc     36322 Jan 28 19:38 runpilot2-wrapper.sh
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc      5111 Jan 28 19:39 queuedata.json
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc       100 Jan 29 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-29 17:16:40] -rwxr-xr-x 1 boinc boinc      7986 Jan 29 15:52 run_atlas
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc       105 Jan 29 15:52 job.xml
[2026-01-29 17:16:40] -rw-r--r-- 2 boinc boinc 527445294 Jan 29 15:52 EVNT.48310618._000040.pool.root.1
[2026-01-29 17:16:40] -rw-r--r-- 2 boinc boinc    597756 Jan 29 15:52 input.tar.gz
[2026-01-29 17:16:40] -rw-r--r-- 2 boinc boinc     15845 Jan 29 15:52 start_atlas.sh
[2026-01-29 17:16:40] drwxrwx--x 2 boinc boinc      4096 Jan 29 15:52 shared
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc         0 Jan 29 15:52 boinc_setup_complete
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc      6443 Jan 29 15:52 init_data.xml
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc         0 Jan 29 15:52 boinc_lockfile
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc      2522 Jan 29 15:52 pandaJob.out
[2026-01-29 17:16:40] -rw------- 1 boinc boinc   1010005 Jan 29 15:52 agis_schedconf.cvmfs.json
[2026-01-29 17:16:40] -rw------- 1 boinc boinc   1516246 Jan 29 15:52 agis_ddmendpoints.agis.ALL.json
[2026-01-29 17:16:40] -rw------- 1 boinc boinc       431 Jan 29 15:52 workernode_map.json
[2026-01-29 17:16:40] drwx------ 5 boinc boinc      4096 Jan 29 15:52 pilot3
[2026-01-29 17:16:40] -rw------- 1 boinc boinc        95 Jan 29 17:15 pilot_heartbeat.json
[2026-01-29 17:16:40] -rw------- 1 boinc boinc 199474193 Jan 29 17:15 HITS.48310620._002061.pool.root.1
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc       530 Jan 29 17:15 boinc_task_state.xml
[2026-01-29 17:16:40] -rw------- 1 boinc boinc      1034 Jan 29 17:16 memory_monitor_summary.json
[2026-01-29 17:16:40] -rw------- 1 boinc boinc    286918 Jan 29 17:16 log.48310620._002061.job.log.tgz.1
[2026-01-29 17:16:40] -rw------- 1 boinc boinc      6337 Jan 29 17:16 heartbeat.json
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc        27 Jan 29 17:16 wrapper_checkpoint.txt
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc      8192 Jan 29 17:16 boinc_mmap_file
[2026-01-29 17:16:40] -rw------- 1 boinc boinc       817 Jan 29 17:16 pilotlog.txt
[2026-01-29 17:16:40] -rw------- 1 boinc boinc    735848 Jan 29 17:16 log.48310620._002061.job.log.1
[2026-01-29 17:16:40] -rw------- 1 boinc boinc       357 Jan 29 17:16 output.list
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc       620 Jan 29 17:16 runtime_log
[2026-01-29 17:16:40] -rw------- 1 boinc boinc   1044480 Jan 29 17:16 result.tar.gz
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc      8916 Jan 29 17:16 runtime_log.err
[2026-01-29 17:16:40] -rw------- 1 boinc boinc       661 Jan 29 17:16 8gaMDmxbP58nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHuGKDmHXcnEo.diag
[2026-01-29 17:16:40] -rw-r--r-- 1 boinc boinc     12555 Jan 29 17:16 stderr.txt
[2026-01-29 17:16:40] HITS file was successfully produced:
[2026-01-29 17:16:40] -rw------- 1 boinc boinc 199474193 Jan 29 17:15 shared/HITS.pool.root.1
[2026-01-29 17:16:40]  *** Contents of shared directory: ***
[2026-01-29 17:16:40] total 711512
[2026-01-29 17:16:40] -rw-r--r-- 2 boinc boinc 527445294 Jan 29 15:52 ATLAS.root_0
[2026-01-29 17:16:40] -rw-r--r-- 2 boinc boinc    597756 Jan 29 15:52 input.tar.gz
[2026-01-29 17:16:40] -rw-r--r-- 2 boinc boinc     15845 Jan 29 15:52 start_atlas.sh
[2026-01-29 17:16:40] -rw------- 1 boinc boinc 199474193 Jan 29 17:15 HITS.pool.root.1
[2026-01-29 17:16:40] -rw------- 1 boinc boinc   1044480 Jan 29 17:16 result.tar.gz
17:17:02 (1832348): run_atlas exited; CPU time 14419.234215
17:17:02 (1832348): called boinc_finish(0)

</stderr_txt>
]]>

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